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----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring done
-- Generating done
-- Build files have been written to: C:/Projects/CIP-build/CIP-build

7>Performing installcython step for 'CIPPython'
7>Fetching package metadata: ....
7>Solving package specifications: .
7>Package plan for installation in environment c:\Projects\CIP-build\CIPPython-install:
7>The following packages will be REMOVED:
7>    conda:     3.9.1-py27_0
7>    conda-env: 2.1.3-py27_0
7>    requests:  2.5.3-py27_0
7>Performing installnumpy step for 'CIPPython'
7>Cannot open c:\Projects\CIP-build\CIPPython-install\Scripts\conda-script.py

7>Project : error PRJ0019: A tool returned an error code from "Performing installnumpy step for 'CIPPython'"

7>Build log was saved at "file://c:\Projects\CIP-build\CIPPython.dir\Release\BuildLog.htm"
7>CIPPython - 1 error(s), 1 warning(s)
9>------ Build started: Project: CIP, Configuration: Release x64 ------
9>Performing configure step for 'CIP'
9>Not searching for unused variables given on the command line.
9>loading initial cache file /.../CIP-build/CIP-prefix/tmp/CIP-cache.cmake
9>----------- ENTRY ------------
9>----------- PHASE 2 ------------
9>Configuring CIP...
9>----------- DONE ------------

Microsoft (R) Visual C++ Express Edition Version 9.0.30729.1.
Copyright (C) Microsoft Corp 2007. All rights reserved.
1>------ Build started: Project: zlib, Configuration: Release x64 ------
2>------ Build started: Project: OpenCV, Configuration: Release x64 ------

2>OpenCV : warning PRJ0009 : Build log could not be opened for writing.

2>Make sure that the file is not open by another process and is not write-protected.
2>Performing update step for 'OpenCV'
1>Performing update step for 'zlib'
2>Performing configure step for 'OpenCV'
1>Performing configure step for 'zlib'
2>loading initial cache file /.../CIP-build/OpenCV-prefix/tmp/OpenCV-cache.cmake
1>loading initial cache file /.../CIP-build/zlib-prefix/tmp/zlib-cache.cmake
2>CMake Warning (dev) at cmake/OpenCVUtils.cmake:279 (if):
2>  Policy CMP0054 is not set: Only interpret if() arguments as variables or
2>  keywords when unquoted.  Run "cmake --help-policy CMP0054" for policy

6>bin.msvc\xmllint.exe
6>       19 file(s) copied.
6> copy bin.msvc\*.pdb C:\Projects\CIP-build\LibXml2-install\bin
6>bin.msvc\*.pdb 
6>The system cannot find the file specified.
6>        0 file(s) copied.
6>Completed 'LibXml2'
6>Build log was saved at "file://c:\Projects\CIP-build\LibXml2.dir\Release\BuildLog.htm"
6>LibXml2 - 0 error(s), 0 warning(s)
7>------ Build started: Project: CIPPython, Configuration: Release x64 ------

7>CIPPython : warning PRJ0009 : Build log could not be opened for writing.

7>Make sure that the file is not open by another process and is not write-protected.
7>Performing update step for 'CIPPython'
7>Current branch master is up to date.
7>No configure step for 'CIPPython'
7>No build step for 'CIPPython'
7>Performing install step for 'CIPPython'
4>-- Generating done
4>-- Build files have been written to: /.../CIP-build/ITKv4-build
4>Performing build step for 'ITKv4'
4>Microsoft (R) Visual C++ Express Edition Version 9.0.30729.1.

9>Microsoft (R) Visual C++ Express Edition Version 9.0.30729.1.
9>Copyright (C) Microsoft Corp 2007. All rights reserved.
9>1>------ Build started: Project: CIP_PYTHON, Configuration: Release x64 ------
9>1>running build_ext
9>1>skipping '/.../CIP/cip_python\wrap_ChestConventions.cpp' Cython extension (up-to-date)
9>1>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\cip_python\CIP_PYTHON.dir\Release\BuildLog.htm"
9>1>CIP_PYTHON - 0 error(s), 0 warning(s)
9>2>------ Build started: Project: CIPIO, Configuration: Release x64 ------
9>2>Compiling...
9>2>cipGeometryTopologyDataIO.cxx

9>2>C:\Projects\CIP\Common\cipGeometryTopologyData.h(44) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>2>C:\Projects\CIP\Common\cipGeometryTopologyData.h(86) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>2>..\..\..\CIP\IO\cipGeometryTopologyDataIO.cxx(198) : warning C4244: 'argument' : conversion from 'double' to 'const float', possible loss of data

9>2>..\..\..\CIP\IO\cipGeometryTopologyDataIO.cxx(240) : warning C4244: 'argument' : conversion from 'double' to 'const float', possible loss of data

9>2>..\..\..\CIP\IO\cipGeometryTopologyDataIO.cxx(252) : warning C4244: 'argument' : conversion from 'double' to 'const float', possible loss of data

9>2>Creating library...
9>2>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\IO\CIPIO.dir\Release\BuildLog.htm"
9>2>CIPIO - 0 error(s), 5 warning(s)
9>3>------ Build started: Project: RegisterLabelMapsLib, Configuration: Release x64 ------
9>3>Compiling...
9>4>------ Build started: Project: RegisterCTLib, Configuration: Release x64 ------
9>4>Compiling...
9>3>RegisterLabelMaps.cxx
9>4>RegisterCT.cxx
9>3>Creating library...

9>138>   Creating library C:\Projects\CIP-build\lib\Release\ComputeIntensityStatisticsTest.lib and object C:\Projects\CIP-build\lib\Release\ComputeIntensityStatisticsTest.exp
9>138>Embedding manifest...
9>138>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\ComputeIntensityStatistics\ComputeIntensityStatisticsTest.dir\Release\BuildLog.htm"
9>138>ComputeIntensityStatisticsTest - 0 error(s), 0 warning(s)
9>139>------ Build started: Project: ComputeIntensityStatistics, Configuration: Release x64 ------
9>139>Linking...
9>139>   Creating library C:\Projects\CIP-build\CIP-build\bin\Release\ComputeIntensityStatistics.lib and object C:\Projects\CIP-build\CIP-build\bin\Release\ComputeIntensityStatistics.exp
9>139>Embedding manifest...
9>139>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\ComputeIntensityStatistics\ComputeIntensityStatistics.dir\Release\BuildLog.htm"
9>139>ComputeIntensityStatistics - 0 error(s), 0 warning(s)

9>135>C:\Projects\CIP\Common\cipGeometryTopologyData.h(44) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>135>C:\Projects\CIP\Common\cipGeometryTopologyData.h(86) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>135>..\..\..\..\CIP\IO\Testing\cipGeometryTopologyDataIOTEST.cxx(11) : warning C4305: '=' : truncation from 'double' to 'float'

9>135>Performing Pre-Link Event...
9>135>Linking...
9>140>------ Build started: Project: ComputeFissureFeatureVectorsTest, Configuration: Release x64 ------
9>140>Performing Pre-Link Event...
9>135>Embedding manifest...
9>140>Linking...
9>135>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\IO\Testing\cipGeometryTopologyDataIOTEST.dir\Release\BuildLog.htm"
9>135>cipGeometryTopologyDataIOTEST - 0 error(s), 3 warning(s)
9>140>   Creating library C:\Projects\CIP-build\lib\Release\ComputeFissureFeatureVectorsTest.lib and object C:\Projects\CIP-build\lib\Release\ComputeFissureFeatureVectorsTest.exp
9>141>------ Build started: Project: cipLobeSurfaceModelIOTEST, Configuration: Release x64 ------

*** WARNING non-zero return value in ctest from: C:\Program Files (x86)\CMake\bin\cmake.exe

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