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----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ExampleCLI
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ComputeAirwayWallFromImages
-- Configuring SEM CLI module: FitBSplineToDeformationField
-- Configuring SEM CLI module: CreateVolumeFromSlices
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in D:/Projects/CIP-build/CIPPython-install/python.exe and flags /DWIN32 /D_WINDOWS /W3 /GR /EHsc  /bigobj  /bigobj
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/deep_learning_models_manager.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/example_pythonCLI.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/tests/test_example.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramMapper.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramModel.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram_emphysema.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/transfer_particles_region_type_values.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/biomechanical_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/laa_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_laa_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_vasculature_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/body_composition_qc.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_qc.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_registration_qc.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/lung_segmentation_qc.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/qc_base.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/vasculature_qc.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/xml_points_qc.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/anterior_vs_posterior_partition.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/lung_splitter.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/rind_vs_core_partition.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/biomechanical_metrics.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/convert_labelmap_to_int.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/extract_2D_patches_from_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/gco_python
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/setup.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/merge_particle_files.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_compute_dice_coefficient.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: D:/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline/crop_ct_2slices.nrrd
-- Configuring done
-- Generating done
-- Build files have been written to: D:/Projects/CIP-build/CIP-build

7>1>Building Custom Rule /.../CIP/cip_python/CMakeLists.txt
7>1>CMake does not need to re-run because /.../CIP-build/CIP-build/cip_python/CMakeFiles/generate.stamp is up-to-date.
7>1>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\cip_python\CIP_PYTHON.dir\Release\BuildLog.htm"
7>1>CIP_PYTHON - 0 error(s), 0 warning(s)
7>2>------ Build started: Project: RescaleLabelMapLib, Configuration: Release x64 ------
7>2>Compiling...
7>2>RescaleLabelMap.cxx
7>3>------ Build started: Project: RegisterLabelMapsLib, Configuration: Release x64 ------
7>3>Compiling...
7>3>RegisterLabelMaps.cxx

7>2>..\..\..\..\CIP\CommandLineTools\RescaleLabelMap\RescaleLabelMap.cxx(29) : error C2899: typename cannot be used outside a template declaration

7>2>..\..\..\..\CIP\CommandLineTools\RescaleLabelMap\RescaleLabelMap.cxx(45) : error C2899: typename cannot be used outside a template declaration

7>2>..\..\..\..\CIP\CommandLineTools\RescaleLabelMap\RescaleLabelMap.cxx(61) : error C2899: typename cannot be used outside a template declaration

7>2>..\..\..\..\CIP\CommandLineTools\RescaleLabelMap\RescaleLabelMap.cxx(77) : error C2899: typename cannot be used outside a template declaration

7>2>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\CommandLineTools\RescaleLabelMap\RescaleLabelMapLib.dir\Release\BuildLog.htm"
7>2>RescaleLabelMapLib - 4 error(s), 0 warning(s)

7>3>..\..\..\..\CIP\CommandLineTools\RegisterLabelMaps\RegisterLabelMaps.cxx(163) : error C2899: typename cannot be used outside a template declaration

7>3>..\..\..\..\CIP\CommandLineTools\RegisterLabelMaps\RegisterLabelMaps.cxx(167) : error C2899: typename cannot be used outside a template declaration

7>3>..\..\..\..\CIP\CommandLineTools\RegisterLabelMaps\RegisterLabelMaps.cxx(170) : error C2899: typename cannot be used outside a template declaration

7>3>..\..\..\..\CIP\CommandLineTools\RegisterLabelMaps\RegisterLabelMaps.cxx(186) : error C2899: typename cannot be used outside a template declaration

7>3>..\..\..\..\CIP\CommandLineTools\RegisterLabelMaps\RegisterLabelMaps.cxx(193) : error C2899: typename cannot be used outside a template declaration

7>3>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\CommandLineTools\RegisterLabelMaps\RegisterLabelMapsLib.dir\Release\BuildLog.htm"
7>3>RegisterLabelMapsLib - 5 error(s), 0 warning(s)
7>4>------ Build started: Project: copy-external-files, Configuration: Release x64 ------
7>5>------ Build started: Project: copy-input-files, Configuration: Release x64 ------
7>4>Copying Resource files
7>4>Building Custom Rule /.../CIP/CMakeLists.txt
7>4>CMake does not need to re-run because /.../CIP-build/CIP-build/CMakeFiles/generate.stamp is up-to-date.
7>4>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\copy-external-files.dir\Release\BuildLog.htm"
7>4>copy-external-files - 0 error(s), 0 warning(s)
7>5>Building Custom Rule /.../CIP/CMakeLists.txt

7>5>CMake does not need to re-run because /.../CIP-build/CIP-build/CMakeFiles/generate.stamp is up-to-date.
7>5>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\copy-input-files.dir\Release\BuildLog.htm"
7>5>copy-input-files - 0 error(s), 0 warning(s)
7>========== Build: 3 succeeded, 2 failed, 251 up-to-date, 0 skipped ==========

7>Project : error PRJ0019: A tool returned an error code from "Performing build step for 'CIP'"

7>Build log was saved at "file://d:\Projects\CIP-build\CIP.dir\Release\BuildLog.htm"
7>CIP - 10 error(s), 0 warning(s)
8>------ Build started: Project: ALL_BUILD, Configuration: Release x64 ------
8>Building Custom Rule /.../CIP/CMakeLists.txt
8>CMake does not need to re-run because /.../CIP-build/CMakeFiles/generate.stamp is up-to-date.
8>Build log was saved at "file://d:\Projects\CIP-build\ALL_BUILD.dir\Release\BuildLog.htm"
8>ALL_BUILD - 0 error(s), 0 warning(s)
========== Build: 7 succeeded, 1 failed, 2 up-to-date, 0 skipped ==========

4>-- Enabled MGHIO, requested by Module_MGHIO.
4>CMake Deprecation Warning at Modules/ThirdParty/VNL/src/vxl/CMakeLists.txt:28 (cmake_policy):
4>  The OLD behavior for policy CMP0033 will be removed from a future version
4>  of CMake.
4>  The cmake-policies(7) manual explains that the OLD behaviors of all
4>  policies are deprecated and that a policy should be set to OLD only under
4>  specific short-term circumstances.  Projects should be ported to the NEW
4>  behavior and not rely on setting a policy to OLD.
4>-- Found ZLIB: /.../CIP-build/zlib-install/lib/zlib.lib (found version "1.2.3") 
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2>## Package Plan ##
2>  environment location: d:\Projects\CIP-build\CIPPython-install
2>  added / updated specs: 
2>    - nipype==0.12.1
2>The following packages will be downloaded:
2>    package                    |            build

6>Microsoft (R) Visual C++ Express Edition Version 9.0.30729.1.
6>Copyright (C) Microsoft Corp 2007. All rights reserved.
6>========== Build: 0 succeeded, 0 failed, 24 up-to-date, 0 skipped ==========
6>No install step for 'teem'
6>Completed 'teem'
6>Building Custom Rule /.../CIP/CMakeLists.txt
6>CMake does not need to re-run because /.../CIP-build/CMakeFiles/generate.stamp is up-to-date.
6>Build log was saved at "file://d:\Projects\CIP-build\teem.dir\Release\BuildLog.htm"
6>teem - 0 error(s), 0 warning(s)
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installscikit-image step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installpynrrd step for 'CIPPython'
2>Requirement already satisfied: pynrrd in d:\projects\cip-build\cippython-install\lib\site-packages
2>Requirement already satisfied: numpy in d:\projects\cip-build\cippython-install\lib\site-packages (from pynrrd)
2>You are using pip version 9.0.1, however version 18.0 is available.
2>You should consider upgrading via the 'python -m pip install --upgrade pip' command.

2>Performing installpydicom step for 'CIPPython'
2>Requirement already satisfied: pydicom==1.1.0 in d:\projects\cip-build\cippython-install\lib\site-packages
2>You are using pip version 9.0.1, however version 18.0 is available.
2>You should consider upgrading via the 'python -m pip install --upgrade pip' command.
2>Performing installnibabel step for 'CIPPython'
2>Requirement already satisfied: nibabel in d:\projects\cip-build\cippython-install\lib\site-packages
2>You are using pip version 9.0.1, however version 18.0 is available.
2>You should consider upgrading via the 'python -m pip install --upgrade pip' command.
2>Performing installnumpy step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2>## Package Plan ##
2>  environment location: d:\Projects\CIP-build\CIPPython-install
2>  added / updated specs: 
2>    - numpy
2>The following packages will be downloaded:
2>    package                    |            build

2>    openssl:         1.0.2o-vc9_0     conda-forge [vc9] --> 1.0.2o-h0c8e037_1
2>The following packages will be DOWNGRADED:
2>    ca-certificates: 2018.4.16-0      conda-forge --> 2018.03.07-0     
2>Downloading and Extracting Packages
2>certifi 2018.4.16:            |   0% certifi 2018.4.16: ########## | 100% 
2>Preparing transaction: ...working... done
2>Verifying transaction: ...working... done
2>Executing transaction: ...working... done
2>Performing installcython step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installscipy step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installvtk step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installpandas step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installnose step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installsphinx step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installsimpleitk step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Performing installxml step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2>## Package Plan ##
2>  environment location: d:\Projects\CIP-build\CIPPython-install
2>  added / updated specs: 
2>    - lxml
2>The following packages will be UPDATED:
2>    libxml2: 2.9.5-vc9_2          conda-forge [vc9] --> 2.9.8-hdfd6920_1    

2>    lxml:    4.2.2-py27h803002f_0 conda-forge --> 4.2.3-py27h31b8cb8_0
2>Preparing transaction: ...working... done
2>Verifying transaction: ...working... done
2>Executing transaction: ...working... done
2>Performing installscikit-learn step for 'CIPPython'
2>Solving environment: ...working... done

2>==> WARNING: A newer version of conda exists. <==

2>  current version: 4.4.10
2>  latest version: 4.5.9
2>Please update conda by running
2>    $ conda update -n base conda
2># All requested packages already installed.
2>Completed 'CIPPython'
2>Building Custom Rule /.../CIP/CMakeLists.txt
2>CMake does not need to re-run because /.../CIP-build/CMakeFiles/generate.stamp is up-to-date.
2>Build log was saved at "file://d:\Projects\CIP-build\CIPPython.dir\Release\BuildLog.htm"
2>CIPPython - 0 error(s), 0 warning(s)

*** WARNING non-zero return value in ctest from: C:\Program Files\CMake\bin\cmake.exe

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