Site Name: bwh002376.bwh.harvard.edu
Build Name: ChestImagingPlatform-release-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20150108-0400-Nightly (related builds)
Time: 2015-01-08T12:24:12 EST
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F34
Compiler Version: unknown
CTest version: ctest-3.0.2

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Stage: Update (0 errors, 0 warnings)

Start Time: 2015-01-08T12:23:47 EST
End Time: 2015-01-08T12:23:48 EST
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2015-01-08T12:23:48 EST
End Time: 2015-01-08T12:24:06 EST
Configure Command: /Users/acil-user/Library/Enthought/Canopy_64bit/User/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/ChestImagingPlatform-release"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: ResampleLabelMap3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleLabelMap2D
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: RegisterLabelMaps3D
-- Configuring SEM CLI module: RegisterLabelMaps2D
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/ChestImagingPlatform-release-build/CIP-build

View Configure Summary

Build (0 errors, 16 warnings)

Build command: -- -i
Start Time: 2015-01-08T12:24:12 EST
End Time: 2015-01-08T12:35:18 EST

View Errors Summary


Build Warnings (16)
[100%] Built target ITKVideoIO
[100%] Built target ITKVideoIO-all
[ 35%] No install step for 'ITKv4'
[ 36%] Completed 'ITKv4'
[ 42%] Built target ITKv4
[ 43%] Performing update step for 'SlicerExecutionModel'
[ 45%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../ChestImagingPlatform-release-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

Linking CXX shared library ../../lib/libvtkViewsInfovis-6.2.dylib
[100%] Built target vtkViewsInfovis
[ 63%] No install step for 'VTKv6'
[ 64%] Completed 'VTKv6'
[ 70%] Built target VTKv6
[ 71%] Performing update step (SVN update) for 'teem'
Updating '.':
At revision 6208.
[ 73%] Performing configure step for 'teem'
loading initial cache file /.../ChestImagingPlatform-release-build/teem-prefix/tmp/teem-cache.cmake

CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):

  Policy CMP0033 is not set: The export_library_dependencies command should
  not be called.  Run "cmake --help-policy CMP0033" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 1267


  File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx
  Line: 1 
Linking CXX static library /.../ChestImagingPlatform-release-build/lib/libCIPUtilities.a
[  3%] Built target CIPUtilities
Scanning dependencies of target CIPCommon
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o

/.../ChestImagingPlatform-release/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:1:9: warning: '_itCIPkMergeChestLabelMapsImageFilter_txx' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]

#ifndef _itCIPkMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Build Log line 1270


  File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx
  Line: 2 
/.../ChestImagingPlatform-release/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:2:9: note: '_itkCIPMergeChestLabelMapsImageFilter_txx' is defined here; did you mean '_itCIPkMergeChestLabelMapsImageFilter_txx'?

#define _itkCIPMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        _itCIPkMergeChestLabelMapsImageFilter_txx
1 warning generated.
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselParticleConnectedComponentFilter.cxx.o
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayParticleConnectedComponentFilter.cxx.o
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureParticleConnectedComponentFilter.cxx.o
[  7%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
[  7%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
Build Log line 1305


  File: cip_python/wrap_ChestConventions.cpp
  Line: 4391 
Scanning dependencies of target CIPIO
[ 10%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipLobeSurfaceModelIO.cxx.o
[ 11%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipChestRegionChestTypeLocationsIO.cxx.o
[ 11%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipThinPlateSplineSurfaceIO.cxx.o
Linking CXX static library /.../ChestImagingPlatform-release-build/lib/libCIPIO.a
[ 11%] Built target CIPIO
running build_ext
cythoning /.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.pyx to /.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp
building 'ChestConventions' extension
/usr/bin/cc -fno-strict-aliasing -I/Users/acil-user/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/.../ChestImagingPlatform-release/Common/ -I/Users/acil-user/anaconda/include/python2.7 -c /.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp -o build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.o

/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:4391:28: warning: unused function '__Pyx_PyObject_AsString' [-Wunused-function]

static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
                           ^

Build Log line 1308


  File: cip_python/wrap_ChestConventions.cpp
  Line: 4388 
/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:4388:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
                               ^

Build Log line 1311


  File: cip_python/wrap_ChestConventions.cpp
  Line: 297 
/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:297:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]

static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
                            ^

Build Log line 1314


  File: cip_python/wrap_ChestConventions.cpp
  Line: 4503 
/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:4503:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]

static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^

Build Log line 1317


  File: cip_python/wrap_ChestConventions.cpp
  Line: 4528 
/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:4528:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]

static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                ^

Build Log line 1320


  File: cip_python/wrap_ChestConventions.cpp
  Line: 4127 
/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:4127:32: warning: unused function '__Pyx_PyInt_From_long' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
                               ^

Build Log line 1323


  File: cip_python/wrap_ChestConventions.cpp
  Line: 4153 
/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:4153:27: warning: function '__Pyx_PyInt_As_long' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
                          ^

Build Log line 1326


  File: cip_python/wrap_ChestConventions.cpp
  Line: 4248 
/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.cpp:4248:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
                         ^
8 warnings generated.
/usr/bin/c++ -bundle -undefined dynamic_lookup -L/Users/acil-user/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-release/cip_python/wrap_ChestConventions.o -L/.../ChestImagingPlatform-release-build/lib -L/Users/acil-user/anaconda/lib -lChestConventions -o /.../ChestImagingPlatform-release/cip_python/ChestConventions.so
[ 11%] Built target CIP_PYTHON
Scanning dependencies of target cipHelperTEST
[ 12%] Building CXX object Common/Testing/CMakeFiles/cipHelperTEST.dir/cipHelperTEST.cxx.o
Linking CXX executable cipHelperTEST
[ 12%] Built target cipHelperTEST
Scanning dependencies of target cipLobeSurfaceModelTEST
Build Log line 1557


  File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx
  Line: 298 
Scanning dependencies of target SegmentLungLobesTest
[ 32%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 32%] Built target SegmentLungLobesTest
[ 32%] Generating ReadDicomWriteTagsCLP.h
GenerateCLP --InputXML /.../ChestImagingPlatform-release/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.xml --OutputCxx /.../ChestImagingPlatform-release-build/CIP-build/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTagsCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "IO" has 4 parameters
Scanning dependencies of target ReadDicomWriteTagsLib
[ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o

/.../ChestImagingPlatform-release/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]

        if ( commaLocation != std::string::npos )
             ~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~

Build Log line 1560


  File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx
  Line: 304 
/.../ChestImagingPlatform-release/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]

        if ( newlineLocation != std::string::npos )
             ~~~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 33%] Built target ReadDicomWriteTagsLib
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 33%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest
[ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsTest.dir/Testing/ReadDicomWriteTagsTest.cxx.o
Linking CXX executable ../Testing/bin/ReadDicomWriteTagsTest
Build Log line 1789


  File: CommandLineTools/GenerateModel/GenerateModel.cxx
  Line: 131 
Scanning dependencies of target CropLungTest
[ 55%] Building CXX object CommandLineTools/CropLung/CMakeFiles/CropLungTest.dir/Testing/CropLungTest.cxx.o
Linking CXX executable ../Testing/bin/CropLungTest
[ 55%] Built target CropLungTest
[ 56%] Generating GenerateModelCLP.h
GenerateCLP --InputXML /.../ChestImagingPlatform-release/CommandLineTools/GenerateModel/GenerateModel.xml --OutputCxx /.../ChestImagingPlatform-release-build/CIP-build/CommandLineTools/GenerateModel/GenerateModelCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "" has 6 parameters
Scanning dependencies of target GenerateModelLib
[ 56%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModelLib.dir/GenerateModel.cxx.o

/.../ChestImagingPlatform-release/CommandLineTools/GenerateModel/GenerateModel.cxx:131:24: warning: comparison of constant -1 with expression of type 'unsigned short' is always false [-Wtautological-constant-out-of-range-compare]

  if ( foregroundLabel == -1 )
       ~~~~~~~~~~~~~~~ ^  ~~
1 warning generated.
Linking CXX static library ../../bin/libGenerateModelLib.a
[ 56%] Built target GenerateModelLib
Linking CXX executable ../../bin/GenerateModel
[ 56%] Built target GenerateModel
Scanning dependencies of target GenerateModelTest
[ 56%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModelTest.dir/Testing/GenerateModelTest.cxx.o
Linking CXX executable ../Testing/bin/GenerateModelTest

View Warnings Summary


Test (42  passed, 37 failed, 0 not run)
 
View Tests Summary