Site Name: Linux1.Amazon.ACIL
Build Name: CIP-Linux-3.14.35-28.38.amzn1.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20160227-0400-Nightly (related builds)
Time: 2016-02-27T00:03:18 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.14.35-28.38.amzn1.x86_64
OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015
Compiler Version: unknown
CTest version: ctest-2.8.12

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Stage: Update (0 errors, 0 warnings)

Start Time: 2016-02-27T00:02:43 EST
End Time: 2016-02-27T00:02:44 EST
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 5

Configure (0 errors, 0 warnings)

Start Time: 2016-02-27T00:02:45 EST
End Time: 2016-02-27T00:03:15 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python
Installing cip_python tools in /home/ec2-user/Projects/CIP-build/CIP-build
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (4 errors, 0 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-02-27T00:03:18 EST
End Time: 2016-02-27T00:10:18 EST

[ 97%] Built target ITKIOPNG
[ 97%] Built target ITKIOPNG-all
[ 97%] Built target ITKIORAW-all
[ 97%] Built target ITKIOSiemens
[ 97%] Built target ITKIOSiemens-all
[ 97%] Built target ITKIOStimulate
[ 97%] Built target ITKIOStimulate-all
[ 97%] Building CXX object Modules/IO/TransformBase/src/CMakeFiles/ITKIOTransformBase.dir/itkTransformFactoryBase.cxx.o
virtual memory exhausted: Cannot allocate memory
Linking CXX shared library ../../../../lib/libITKIOTransformBase-4.9.so

c++: error: CMakeFiles/ITKIOTransformBase.dir/itkTransformFactoryBase.cxx.o: No such file or directory

[ 97%] Built target ITKIOTransformBase
[ 97%] Built target ITKIOTransformBase-all
[ 97%] Built target ITKIOTransformHDF5
[ 97%] Built target ITKIOTransformHDF5-all
[ 97%] Built target ITKIOTransformInsightLegacy
[ 97%] Built target ITKIOTransformInsightLegacy-all
[ 98%] Built target ITKIOTransformMatlab
[ 98%] Built target ITKIOTransformMatlab-all
[ 98%] Built target ITKIOVTK
[ 98%] Built target ITKIOVTK-all
[ 67%] Built target GenerateOverlayImagesLib
Linking CXX executable ../../bin/GenerateOverlayImages
[ 68%] Built target GenerateOverlayImages
Linking CXX executable ../Testing/bin/GenerateOverlayImagesTest
[ 68%] Built target GenerateOverlayImagesTest
[ 68%] Building CXX object CommandLineTools/GetTransformationSimilarityMetric/CMakeFiles/GetTransformationSimilarityMetricLib.dir/GetTransformationSimilarityMetric.cxx.o
/tmp/ccDkUuYY.s: Assembler messages:
/tmp/ccDkUuYY.s: Fatal error: can't write CMakeFiles/GetTransformationSimilarityMetricLib.dir/GetTransformationSimilarityMetric.cxx.o: No space left on device
/tmp/ccDkUuYY.s: Fatal error: can't close CMakeFiles/GetTransformationSimilarityMetricLib.dir/GetTransformationSimilarityMetric.cxx.o: No space left on device
Linking CXX static library ../../bin/libGetTransformationSimilarityMetricLib.a

/usr/bin/ar: CMakeFiles/GetTransformationSimilarityMetricLib.dir/GetTransformationSimilarityMetric.cxx.o: No such file or directory

[ 68%] Built target GetTransformationSimilarityMetricLib

gmake[5]: *** No rule to make target `bin/libGetTransformationSimilarityMetricLib.a', needed by `bin/GetTransformationSimilarityMetric'.  Stop.

[ 68%] Built target GetTransformationSimilarityMetric

gmake[5]: *** No rule to make target `bin/libGetTransformationSimilarityMetricLib.a', needed by `CommandLineTools/Testing/bin/GetTransformationSimilarityMetricTest'.  Stop.

[ 69%] Built target GetTransformationSimilarityMetricTest
[ 69%] Built target GetTransformationKappa2DLib
Linking CXX executable ../../bin/GetTransformationKappa2D
[ 69%] Built target GetTransformationKappa2D
Linking CXX executable ../Testing/bin/GetTransformationKappa2DTest
[ 70%] Built target GetTransformationKappa2DTest
[ 70%] Built target GetTransformationKappaLib
Linking CXX executable ../../bin/GetTransformationKappa
[ 71%] Built target GetTransformationKappa
Linking CXX executable ../Testing/bin/GetTransformationKappaTest
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Test (0  passed, 0 failed, 0 not run)
 
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