OS Name: Linux OS Platform: x86_64 OS Release: 3.14.35-28.38.amzn1.x86_64 OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015 Compiler Version: unknown CTest version: ctest-2.8.12
error: Untracked working tree file '.NoDartCoverage' would be overwritten by merge.
fatal: unable to checkout working tree
warning: Clone succeeded, but checkout failed.
You can inspect what was checked out with 'git status'
and retry the checkout with 'git checkout -f HEAD'
fatal: destination path 'zlib' already exists and is not an empty directory.
fatal: destination path 'zlib' already exists and is not an empty directory.
-- Had to git clone more than once:
3 times.
CMake Error at zlib-prefix/tmp/zlib-gitclone.cmake:40 (message):
Failed to clone repository: 'git://github.com/commontk/zlib.git'
[ 13%] No patch step for 'zlib'
[ 14%] Performing update step for 'zlib'
[ 16%] Performing configure step for 'zlib'
loading initial cache file /.../CIP-build/zlib-prefix/tmp/zlib-cache.cmake
-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
CMake Error at /usr/share/cmake/Modules/CMakeCXXInformation.cmake:37 (get_filename_component):
get_filename_component called with incorrect number of arguments
Call Stack (most recent call first):
CMakeLists.txt:2 (PROJECT)
CMake Error: CMAKE_CXX_COMPILER not set, after EnableLanguage
CMake Error: Internal CMake error, TryCompile configure of cmake failed
-- Check for working CXX compiler: /usr/bin/c++ -- broken
CMake Error at /usr/share/cmake/Modules/CMakeTestCXXCompiler.cmake:54 (message):
The C++ compiler "/usr/bin/c++" is not able to compile a simple test
program.
It fails with the following output:
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:3 (PROJECT)
-- Configuring incomplete, errors occurred!
See also "/.../CIP-build/zlib-build/CMakeFiles/CMakeOutput.log".
See also "/.../CIP-build/zlib-build/CMakeFiles/CMakeError.log".
[ 19%] Performing build step for 'zlib'
gmake[3]: *** No targets specified and no makefile found. Stop.
[ 20%] Performing install step for 'zlib'
gmake[3]: *** No rule to make target `install'. Stop.
git process crashed in this repository earlier. Make sure no other git
process is running and remove the file manually to continue.
warning: Clone succeeded, but checkout failed.
You can inspect what was checked out with 'git status'
and retry the checkout with 'git checkout -f HEAD'
fatal: destination path 'VTKv7' already exists and is not an empty directory.
fatal: destination path 'VTKv7' already exists and is not an empty directory.
-- Had to git clone more than once:
3 times.
CMake Error at VTKv7-prefix/tmp/VTKv7-gitclone.cmake:40 (message):
Failed to clone repository: 'git://github.com/Slicer/VTK.git'
[ 23%] No patch step for 'VTKv7'
[ 24%] Performing update step for 'VTKv7'
[ 25%] Performing configure step for 'VTKv7'
loading initial cache file /.../CIP-build/VTKv7-prefix/tmp/VTKv7-cache.cmake
-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Performing Test VTK_HAS_STD_ISNAN - Success
-- Performing Test VTK_HAS_STD_ISINF
-- Performing Test VTK_HAS_STD_ISINF - Success
-- Performing Test VTK_HAS_STD_ISFINITE
-- Performing Test VTK_HAS_STD_ISFINITE - Success
-- Looking for isnan
-- Looking for isnan - found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isfinite
CMake Error at CMakeLists.txt:11 (ADD_EXECUTABLE):
CMake Error: Internal CMake error, TryCompile generation of cmake failed
-- Looking for isfinite - not found
-- Looking for finite
-- Looking for finite - found
-- Looking for fenv.h
-- Looking for fenv.h - found
-- Looking for feenableexcept
-- Looking for feenableexcept - found
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Looking for C++ include fcntl.h - found
-- Looking for C++ include unistd.h
-- Looking for C++ include unistd.h - found
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - not found
-- Looking for gethostbyname in nsl
-- Looking for gethostbyname in nsl - not found
-- Looking for gethostbyname in bsd
CMake Error: The source directory "/.../CIP-build/VTKv7-build/CMakeFiles/CMakeTmp" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
CMake Error: Internal CMake error, TryCompile configure of cmake failed
-- Looking for gethostbyname in bsd - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib64/libX11.so
-- Looking for include file search.h - found
-- Looking for include file stdlib.h
-- Looking for include file stdlib.h - found
-- Looking for include file string.h
-- Looking for include file string.h - found
-- Looking for include file strings.h
-- Looking for include file strings.h - found
-- Looking for include file sys/stat.h
-- Looking for include file sys/stat.h - not found
-- Looking for include file sys/time.h
CMake Error: The source directory "/.../CIP-build/VTKv7-build/CMakeFiles/CMakeTmp" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
-- Looking for include file sys/time.h - not found
-- Looking for include file windows.h
CMake Error: Internal CMake error, TryCompile configure of cmake failed
CMake Error: The source directory "/.../CIP-build/VTKv7-build/CMakeFiles/CMakeTmp" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
CMake Error: Internal CMake error, TryCompile configure of cmake failed
-- Looking for include file windows.h - not found
-- Looking for include file ieeefp.h
-- Looking for include file ieeefp.h - not found
-- Looking for floor
-- Looking for floor - not found
-- Looking for getopt
-- Looking for getopt - not found
-- Looking for isascii
-- Looking for isascii - not found
-- Looking for memmove
-- Looking for clock_gettime - not found
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - not found
-- Looking for clock_gettime in posix4
-- Looking for clock_gettime in posix4 - not found
-- Looking for include file sys/resource.h
-- Looking for include file sys/resource.h - not found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - not found
-- Looking for include file unistd.h
CMake Error at CMakeLists.txt:11 (ADD_EXECUTABLE):
CMake Error: Internal CMake error, TryCompile generation of cmake failed
-- Looking for include file unistd.h - not found
-- Looking for include file sys/ioctl.h
-- Looking for include file sys/ioctl.h - not found
-- Looking for include file sys/stat.h
-- Looking for include file sys/stat.h - not found
-- Looking for include file sys/socket.h
-- Looking for include file sys/socket.h - not found
-- Looking for include file sys/types.h
CMake Error at CMakeLists.txt:11 (ADD_EXECUTABLE):
CMake Error: Internal CMake error, TryCompile generation of cmake failed
-- Looking for include file sys/types.h - not found
-- Looking for include file stddef.h
-- Looking for include file stddef.h - not found
-- Looking for include file setjmp.h
CMake Error: There is a CMakeCache.txt file for the current binary tree but cmake does not have permission to read it. Please check the permissions of the directory you are trying to run CMake on.
CMake Error: Could not find cmake module file: CMakeCInformation.cmake
terminate called after throwing an instance of 'std::logic_error'
what(): basic_string::_S_construct null not valid
/bin/sh: line 1: 22540 Aborted /usr/bin/cmake -C/.../CIP-build/VTKv7-prefix/tmp/VTKv7-cache.cmake "-GUnix Makefiles" /.../CIP-build/VTKv7
[ 27%] Performing build step for 'VTKv7'
gmake[3]: *** No targets specified and no makefile found. Stop.
[ 28%] No install step for 'VTKv7'
[ 29%] Completed 'VTKv7'
[ 29%] Built target VTKv7
Scanning dependencies of target teem
[ 30%] Creating directories for 'teem'
[ 32%] Performing download step (git clone) for 'teem'
Cloning into 'teem'...
Note: checking out 'e4746083c0e1dc0c137124c41eca5d23adf73bfa'.
You are in 'detached HEAD' state. You can look around, make experimental
[ 48%] Building C object CMakeFiles/teem.dir/src/mite/ray.c.o
[ 48%] Building C object CMakeFiles/teem.dir/src/mite/renderMite.c.o
[ 49%] Building C object CMakeFiles/teem.dir/src/mite/shade.c.o
[ 49%] Building C object CMakeFiles/teem.dir/src/mite/thread.c.o
[ 49%] Building C object CMakeFiles/teem.dir/src/mite/txf.c.o
[ 49%] Building C object CMakeFiles/teem.dir/src/mite/user.c.o
[ 50%] Building C object CMakeFiles/teem.dir/src/meet/enumall.c.o
[ 50%] Building C object CMakeFiles/teem.dir/src/meet/meetNrrd.c.o
[ 50%] Building C object CMakeFiles/teem.dir/src/meet/meetGage.c.o
[ 50%] Building C object CMakeFiles/teem.dir/src/meet/meetPull.c.o
gmake[5]: *** No rule to make target `/.../CIP-build/zlib-install/lib/libzlib.a', needed by `bin/libteem.so.1.12.0'. Stop.
[ 94%] Built target teem
Scanning dependencies of target airSanity
[ 94%] Building C object src/bin/CMakeFiles/airSanity.dir/airSanity.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/airSanity'. Stop.
[ 94%] Built target airSanity
Scanning dependencies of target cubic
[ 94%] Building C object src/bin/CMakeFiles/cubic.dir/cubic.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/cubic'. Stop.
[ 94%] Built target cubic
Scanning dependencies of target deconv
[ 94%] Building C object src/bin/CMakeFiles/deconv.dir/deconv.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/deconv'. Stop.
[ 94%] Built target deconv
Scanning dependencies of target emap
[ 95%] Building C object src/bin/CMakeFiles/emap.dir/emap.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/emap'. Stop.
[ 95%] Built target emap
Scanning dependencies of target gkms
[ 95%] Building C object src/bin/CMakeFiles/gkms.dir/gkms.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/gkms'. Stop.
[ 95%] Built target gkms
Scanning dependencies of target gprobe
[ 95%] Building C object src/bin/CMakeFiles/gprobe.dir/gprobe.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/gprobe'. Stop.
[ 95%] Built target gprobe
Scanning dependencies of target ilk
[ 95%] Building C object src/bin/CMakeFiles/ilk.dir/ilk.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/ilk'. Stop.
[ 95%] Built target ilk
Scanning dependencies of target miter
[ 96%] Building C object src/bin/CMakeFiles/miter.dir/miter.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/miter'. Stop.
[ 96%] Built target miter
Scanning dependencies of target mrender
[ 96%] Building C object src/bin/CMakeFiles/mrender.dir/mrender.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/mrender'. Stop.
[ 96%] Built target mrender
Scanning dependencies of target ninspect
[ 96%] Building C object src/bin/CMakeFiles/ninspect.dir/ninspect.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/ninspect'. Stop.
[ 96%] Built target ninspect
Scanning dependencies of target nrrdSanity
[ 96%] Building C object src/bin/CMakeFiles/nrrdSanity.dir/nrrdSanity.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/nrrdSanity'. Stop.
[ 96%] Built target nrrdSanity
Scanning dependencies of target overrgb
[ 97%] Building C object src/bin/CMakeFiles/overrgb.dir/overrgb.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/overrgb'. Stop.
[ 97%] Built target overrgb
Scanning dependencies of target pprobe
[ 97%] Building C object src/bin/CMakeFiles/pprobe.dir/pprobe.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/pprobe'. Stop.
[ 97%] Built target pprobe
Scanning dependencies of target puller
[ 97%] Building C object src/bin/CMakeFiles/puller.dir/puller.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/puller'. Stop.
[ 97%] Built target puller
Scanning dependencies of target qbert
[ 97%] Building C object src/bin/CMakeFiles/qbert.dir/qbert.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/qbert'. Stop.
[ 97%] Built target qbert
Scanning dependencies of target spots
[ 98%] Building C object src/bin/CMakeFiles/spots.dir/spots.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/spots'. Stop.
[ 98%] Built target spots
Scanning dependencies of target talkweb
[ 98%] Building C object src/bin/CMakeFiles/talkweb.dir/talkweb.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/talkweb'. Stop.
[ 98%] Built target talkweb
Scanning dependencies of target tend
[ 99%] Building C object src/bin/CMakeFiles/tend.dir/tend.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/tend'. Stop.
[ 99%] Built target tend
Scanning dependencies of target ungantry
[ 99%] Building C object src/bin/CMakeFiles/ungantry.dir/ungantry.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/ungantry'. Stop.
[ 99%] Built target ungantry
Scanning dependencies of target unu
[ 99%] Building C object src/bin/CMakeFiles/unu.dir/unu.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/unu'. Stop.
[ 99%] Built target unu
Scanning dependencies of target vprobe
[100%] Building C object src/bin/CMakeFiles/vprobe.dir/vprobe.c.o
gmake[5]: *** No rule to make target `bin/libteem.so.1.12.0', needed by `bin/vprobe'. Stop.
[100%] Built target vprobe
[ 38%] No install step for 'teem'
[ 39%] Completed 'teem'
[ 39%] Built target teem
Scanning dependencies of target CIPPython
[ 40%] Creating directories for 'CIPPython'
[ 43%] Performing download step (git clone) for 'CIPPython'
Cloning into 'CIPPython'...
Already on 'master'
Your branch is up-to-date with 'origin/master'.
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/mathews/simpson.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/mathews/trapezod.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/mathews/adaquad.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/sparse/spAllocate.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/sparse/spBuild.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/sparse/spFactor.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/sparse/spSolve.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/sparse/spUtils.c.o
[ 30%] Building C object Modules/ThirdParty/VNL/src/vxl/v3p/netlib/CMakeFiles/itkv3p_netlib.dir/sparse/spOutput.c.o
Linking C shared library ../../../../../../../lib/libitkv3p_netlib-4.10.so
CMake Error: cmake_symlink_library: System Error: File exists
[ 30%] Built target itkv3p_netlib
Scanning dependencies of target itkvnl_algo
[ 30%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_cholesky.cxx.o
[ 31%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_ldl_cholesky.cxx.o
[ 31%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_sparse_lu.cxx.o
[ 31%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_real_eigensystem.cxx.o
[ 31%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_complex_eigensystem.cxx.o
[ 31%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_generalized_eigensystem.cxx.o
[ 31%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_sparse_symmetric_eigensystem.cxx.o
[ 31%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/CMakeFiles/itkvnl_algo.dir/vnl_generalized_schur.cxx.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/dgamma.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/dlbeta.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/dlgams.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/dlngam.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/dlnrel.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/initds.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/xermsg.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/d_int.c.o
[ 41%] Building C object Modules/ThirdParty/Netlib/src/netlib/slatec/CMakeFiles/itkNetlibSlatec.dir/d_mod.c.o
Linking C shared library ../../../../../../lib/libitkNetlibSlatec-4.10.so
CMake Error: cmake_symlink_library: System Error: File exists
[ 41%] Built target itkNetlibSlatec
Scanning dependencies of target ITKNetlib-all
[ 41%] Built target ITKNetlib-all
Scanning dependencies of target ITKStatistics
[ 41%] Building CXX object Modules/Numerics/Statistics/src/CMakeFiles/ITKStatistics.dir/itkProbabilityDistribution.cxx.o
[ 41%] Building CXX object Modules/Numerics/Statistics/src/CMakeFiles/ITKStatistics.dir/itkDenseFrequencyContainer2.cxx.o
[ 41%] Building CXX object Modules/Numerics/Statistics/src/CMakeFiles/ITKStatistics.dir/itkSparseFrequencyContainer2.cxx.o
[ 41%] Building CXX object Modules/Numerics/Statistics/src/CMakeFiles/ITKStatistics.dir/itkChiSquareDistribution.cxx.o
[ 41%] Building CXX object Modules/Numerics/Statistics/src/CMakeFiles/ITKStatistics.dir/itkGaussianDistribution.cxx.o
[ 41%] Building CXX object Modules/Numerics/Statistics/src/CMakeFiles/ITKStatistics.dir/itkTDistribution.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaOutput.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaScene.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaSurface.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaTube.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaVesselTube.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaTransform.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaTubeGraph.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaForm.cxx.o
[ 43%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaArray.cxx.o
[ 44%] Building CXX object Modules/ThirdParty/MetaIO/src/MetaIO/src/CMakeFiles/ITKMetaIO.dir/metaFEMObject.cxx.o
gmake[5]: *** No rule to make target `/.../CIP-build/zlib-install/lib/libzlib.a', needed by `lib/libITKMetaIO-4.10.so.1'. Stop.
[ 44%] Built target ITKMetaIO
[ 44%] Built target ITKMetaIO-all
Scanning dependencies of target ITKSpatialObjects
[ 44%] Building CXX object Modules/Core/SpatialObjects/src/CMakeFiles/ITKSpatialObjects.dir/itkMetaEvent.cxx.o
[ 44%] Building CXX object Modules/Core/SpatialObjects/src/CMakeFiles/ITKSpatialObjects.dir/itkCylinderSpatialObject.cxx.o
[ 44%] Building CXX object Modules/Core/SpatialObjects/src/CMakeFiles/ITKSpatialObjects.dir/itkSpatialObjectFactoryBase.cxx.o
[ 44%] Building CXX object Modules/Core/SpatialObjects/src/CMakeFiles/ITKSpatialObjects.dir/itkArrowSpatialObject.cxx.o
Linking CXX shared library ../../../../lib/libITKSpatialObjects-4.10.so
[ 44%] Built target ITKSpatialObjects
[ 44%] Built target ITKSpatialObjects-all
[ 44%] Built target ITKThresholding-all
[ 44%] Built target ITKConnectedComponents-all
[ 44%] Built target ITKMathematicalMorphology-all
[ 44%] Built target ITKBinaryMathematicalMorphology-all
[ 44%] Built target ITKImageLabel-all
[ 44%] Built target ITKNarrowBand-all
[ 44%] Built target ITKDistanceMap-all
Scanning dependencies of target ITKQuadEdgeMesh
[ 44%] Building CXX object Modules/Core/QuadEdgeMesh/src/CMakeFiles/ITKQuadEdgeMesh.dir/itkQuadEdge.cxx.o
Linking CXX shared library ../../../../lib/libITKQuadEdgeMesh-4.10.so
CMake Error: cmake_symlink_library: System Error: File exists
[ 44%] Built target ITKQuadEdgeMesh
[ 44%] Built target ITKQuadEdgeMesh-all
Scanning dependencies of target ITKFastMarching-all
[ 44%] Built target ITKFastMarching-all
Scanning dependencies of target ITKIOImageBase
[ 44%] Building CXX object Modules/IO/ImageBase/src/CMakeFiles/ITKIOImageBase.dir/itkImageSeriesWriter.cxx.o
[ 44%] Building CXX object Modules/IO/ImageBase/src/CMakeFiles/ITKIOImageBase.dir/itkImageFileReaderException.cxx.o
[ 44%] Building CXX object Modules/IO/ImageBase/src/CMakeFiles/ITKIOImageBase.dir/itkImageFileWriter.cxx.o
[ 44%] Building CXX object Modules/IO/ImageBase/src/CMakeFiles/ITKIOImageBase.dir/itkArchetypeSeriesFileNames.cxx.o
[ 44%] Building CXX object Modules/IO/ImageBase/src/CMakeFiles/ITKIOImageBase.dir/itkImageIOFactory.cxx.o
Scanning dependencies of target ITKPolynomials
[ 47%] Building CXX object Modules/Numerics/Polynomials/src/CMakeFiles/ITKPolynomials.dir/itkMultivariateLegendrePolynomial.cxx.o
Linking CXX shared library ../../../../lib/libITKPolynomials-4.10.so
[ 47%] Built target ITKPolynomials
Scanning dependencies of target ITKPolynomials-all
[ 47%] Built target ITKPolynomials-all
Scanning dependencies of target ITKBiasCorrection
[ 47%] Building CXX object Modules/Filtering/BiasCorrection/src/CMakeFiles/ITKBiasCorrection.dir/itkCompositeValleyFunction.cxx.o
[ 47%] Building CXX object Modules/Filtering/BiasCorrection/src/CMakeFiles/ITKBiasCorrection.dir/itkCacheableScalarFunction.cxx.o
Linking CXX shared library ../../../../lib/libITKBiasCorrection-4.10.so
CMake Error: cmake_symlink_library: System Error: File exists
[ 47%] Built target ITKBiasCorrection
Scanning dependencies of target ITKBiasCorrection-all
[ 47%] Built target ITKBiasCorrection-all
Scanning dependencies of target ITKBioCell
[ 47%] Building CXX object Modules/Segmentation/BioCell/src/CMakeFiles/ITKBioCell.dir/itkBioGenome.cxx.o
[ 47%] Building CXX object Modules/Segmentation/BioCell/src/CMakeFiles/ITKBioCell.dir/itkBioGene.cxx.o
[ 47%] Building CXX object Modules/Segmentation/BioCell/src/CMakeFiles/ITKBioCell.dir/itkBioGeneNetwork.cxx.o
[ 47%] Building CXX object Modules/Segmentation/BioCell/src/CMakeFiles/ITKBioCell.dir/itkBioCellBase.cxx.o
[ 47%] Building CXX object Modules/Segmentation/BioCell/src/CMakeFiles/ITKBioCell.dir/itkBioCellularAggregateBase.cxx.o
Linking CXX shared library ../../../../lib/libITKBioCell-4.10.so
The maximum number of reported warnings or errors has been reached!!!
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/thread.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/detail/thread.hpp:29,
from ./boost/thread/thread_only.hpp:22,
from libs/thread/src/pthread/thread.cpp:11:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
In file included from ./boost/tuple/tuple.hpp:33:0,
from ./boost/thread/detail/async_func.hpp:37,
from ./boost/thread/future.hpp:22,
from libs/thread/src/pthread/thread.cpp:19:
./boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:
./boost/tuple/detail/tuple_basic.hpp:228:45: warning: typedef ‘cons_element’ locally defined but not used [-Wunused-local-typedefs]
typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/once.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/pthread/once_atomic.hpp:19,
from ./boost/thread/once.hpp:20,
from libs/thread/src/pthread/./once_atomic.cpp:9,
from libs/thread/src/pthread/once.cpp:8:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/future.o
gcc.archive bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/libboost_thread.a
common.copy /.../CIP-build/Boost-install/lib/libboost_thread.a
...updated 974 targets...
[ 4%] Performing build step for 'Boost'
cmake version 2.8.12
Usage
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMLoadElementBase.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMLoadGrav.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMLoadLandmark.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMLoadNoisyLandmark.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMLoadNode.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMLoadPoint.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMMaterialBase.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMMaterialLinearElasticity.cxx.o
[ 50%] Building CXX object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/itkFEMUtility.cxx.o
[ 50%] Building C object Modules/Numerics/FEM/src/CMakeFiles/ITKFEM.dir/dsrc2c.c.o
cc1: warning: command line option ‘-fvisibility-inlines-hidden’ is valid for C++/ObjC++ but not for C [enabled by default]
gmake[5]: *** No rule to make target `lib/libITKMetaIO-4.10.so.1', needed by `lib/libITKFEM-4.10.so.1'. Stop.
[ 50%] Built target ITKFEM
Scanning dependencies of target ITKFEM-all
[ 50%] Built target ITKFEM-all
Scanning dependencies of target ITKPDEDeformableRegistration-all
[ 50%] Built target ITKPDEDeformableRegistration-all
[ 50%] Built target ITKFEMRegistration-all
Scanning dependencies of target gdcmsocketxx
[ 50%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Utilities/socketxx/socket++/CMakeFiles/gdcmsocketxx.dir/sockstream.cpp.o
[ 50%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Utilities/socketxx/socket++/CMakeFiles/gdcmsocketxx.dir/sockinet.cpp.o
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread/thread.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/detail/thread.hpp:29,
from ./boost/thread/thread_only.hpp:22,
from libs/thread/src/pthread/thread.cpp:11:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
In file included from ./boost/tuple/tuple.hpp:33:0,
from ./boost/thread/detail/async_func.hpp:37,
from ./boost/thread/future.hpp:22,
from libs/thread/src/pthread/thread.cpp:19:
./boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:
./boost/tuple/detail/tuple_basic.hpp:228:45: warning: typedef ‘cons_element’ locally defined but not used [-Wunused-local-typedefs]
typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread/once.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/pthread/once_atomic.hpp:19,
from ./boost/thread/once.hpp:20,
from libs/thread/src/pthread/./once_atomic.cpp:9,
from libs/thread/src/pthread/once.cpp:8:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
const int result = ::getrlimit( RLIMIT_STACK, & limit);
^
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp: In member function ‘void boost::coroutines::detail::standard_stack_allocator::allocate(boost::coroutines::stack_context&, std::size_t)’:
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/thread.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/detail/thread.hpp:29,
from ./boost/thread/thread_only.hpp:22,
from libs/thread/src/pthread/thread.cpp:11:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
In file included from ./boost/tuple/tuple.hpp:33:0,
from ./boost/thread/detail/async_func.hpp:37,
from ./boost/thread/future.hpp:22,
from libs/thread/src/pthread/thread.cpp:19:
./boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:
./boost/tuple/detail/tuple_basic.hpp:228:45: warning: typedef ‘cons_element’ locally defined but not used [-Wunused-local-typedefs]
typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/once.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/pthread/once_atomic.hpp:19,
from ./boost/thread/once.hpp:20,
from libs/thread/src/pthread/./once_atomic.cpp:9,
from libs/thread/src/pthread/once.cpp:8:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
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