Site Name: Linux1.Amazon.ACIL
Build Name: CIP-Linux-3.14.35-28.38.amzn1.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20160223-0400-Nightly (related builds)
Time: 2016-02-23T00:03:29 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.14.35-28.38.amzn1.x86_64
OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015
Compiler Version: unknown
CTest version: ctest-2.8.12

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Stage: Update (0 errors, 0 warnings)

Start Time: 2016-02-23T00:02:58 EST
End Time: 2016-02-23T00:02:59 EST
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 1

Configure (0 errors, 0 warnings)

Start Time: 2016-02-23T00:03:00 EST
End Time: 2016-02-23T00:03:24 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python
Installing cip_python tools in /home/ec2-user/Projects/CIP-build/CIP-build
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (8 errors, 0 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-02-23T00:03:29 EST
End Time: 2016-02-23T00:12:05 EST

[ 97%] Built target ITKIOPNG
[ 97%] Built target ITKIOPNG-all
[ 97%] Built target ITKIORAW-all
[ 97%] Built target ITKIOSiemens
[ 97%] Built target ITKIOSiemens-all
[ 97%] Built target ITKIOStimulate
[ 97%] Built target ITKIOStimulate-all
[ 97%] Building CXX object Modules/IO/TransformBase/src/CMakeFiles/ITKIOTransformBase.dir/itkTransformFactoryBase.cxx.o
virtual memory exhausted: Cannot allocate memory
Linking CXX shared library ../../../../lib/libITKIOTransformBase-4.9.so

c++: error: CMakeFiles/ITKIOTransformBase.dir/itkTransformFactoryBase.cxx.o: No such file or directory

[ 97%] Built target ITKIOTransformBase
[ 97%] Built target ITKIOTransformBase-all
[ 97%] Built target ITKIOTransformHDF5
[ 97%] Built target ITKIOTransformHDF5-all
[ 97%] Built target ITKIOTransformInsightLegacy
[ 97%] Built target ITKIOTransformInsightLegacy-all
[ 98%] Built target ITKIOTransformMatlab
[ 98%] Built target ITKIOTransformMatlab-all
[ 98%] Built target ITKIOVTK
[ 98%] Built target ITKIOVTK-all
[ 77%] Built target RegisterLabelMapsLib
Linking CXX executable ../../bin/RegisterLabelMaps
[ 77%] Built target RegisterLabelMaps
Linking CXX executable ../Testing/bin/RegisterLabelMapsTest
[ 78%] Built target RegisterLabelMapsTest
[ 78%] Building CXX object CommandLineTools/RegisterCT/CMakeFiles/RegisterCTLib.dir/RegisterCT.cxx.o
/tmp/cctYb0ZM.s: Assembler messages:
/tmp/cctYb0ZM.s: Fatal error: can't write CMakeFiles/RegisterCTLib.dir/RegisterCT.cxx.o: No space left on device
/tmp/cctYb0ZM.s: Fatal error: can't close CMakeFiles/RegisterCTLib.dir/RegisterCT.cxx.o: No space left on device
Linking CXX static library ../../bin/libRegisterCTLib.a

/usr/bin/ar: CMakeFiles/RegisterCTLib.dir/RegisterCT.cxx.o: No such file or directory

[ 78%] Built target RegisterCTLib

gmake[5]: *** No rule to make target `bin/libRegisterCTLib.a', needed by `bin/RegisterCT'.  Stop.

[ 79%] Built target RegisterCT

gmake[5]: *** No rule to make target `bin/libRegisterCTLib.a', needed by `CommandLineTools/Testing/bin/RegisterCTTest'.  Stop.

[ 80%] Built target RegisterCTTest
[ 80%] Built target MergeChestLabelMapsLib
[ 81%] Built target MergeChestLabelMaps
[ 81%] Built target MergeChestLabelMapsTest
[ 82%] Built target MaskOutLabelMapStructuresLib
[ 82%] Built target MaskOutLabelMapStructures
[ 82%] Built target MaskOutLabelMapStructuresTest
[ 82%] Built target ComputeFeatureStrengthLib
[ 82%] Built target ComputeFeatureStrength
[ 83%] Built target ComputeFeatureStrengthTest
Build Log line 2540


  File: CommandLineTools/GenerateLesionSegmentation/GenerateLesionSegmentation.cxx
  Line: 266 
[ 91%] Built target EnhanceFissuresInImageLib
[ 91%] Built target EnhanceFissuresInImage
[ 91%] Built target EnhanceFissuresInImageTest
[ 92%] Built target ComputeFissureFeatureVectorsLib
[ 92%] Built target ComputeFissureFeatureVectors
[ 92%] Built target ComputeFissureFeatureVectorsTest
[ 93%] Built target FitLobeSurfaceModelsToParticleDataLib
[ 93%] Built target FitLobeSurfaceModelsToParticleData
[ 93%] Built target FitLobeSurfaceModelsToParticleDataTest
[ 94%] Building CXX object CommandLineTools/GenerateLesionSegmentation/CMakeFiles/GenerateLesionSegmentationLib.dir/GenerateLesionSegmentation.cxx.o

/.../CIP/CommandLineTools/GenerateLesionSegmentation/GenerateLesionSegmentation.cxx:266:1: fatal error: error writing to /tmp/ccTkmbL1.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Linking CXX static library ../../bin/libGenerateLesionSegmentationLib.a

/usr/bin/ar: CMakeFiles/GenerateLesionSegmentationLib.dir/GenerateLesionSegmentation.cxx.o: No such file or directory

[ 94%] Built target GenerateLesionSegmentationLib

gmake[5]: *** No rule to make target `bin/libGenerateLesionSegmentationLib.a', needed by `bin/GenerateLesionSegmentation'.  Stop.

[ 94%] Built target GenerateLesionSegmentation

gmake[5]: *** No rule to make target `bin/libGenerateLesionSegmentationLib.a', needed by `CommandLineTools/Testing/bin/GenerateLesionSegmentationTest'.  Stop.

[ 94%] Built target GenerateLesionSegmentationTest
[ 95%] Built target RemapLabelMapLib
[ 95%] Built target RemapLabelMap
[ 95%] Built target RemapLabelMapTest
[ 96%] Built target GenerateNLMFilteredImageLib
[ 96%] Built target GenerateNLMFilteredImage
[ 96%] Built target GenerateNLMFilteredImageTest
[ 97%] Built target ComputeAirwayWallFromParticlesLib
[ 97%] Built target ComputeAirwayWallFromParticles
[ 97%] Built target ComputeAirwayWallFromParticlesTest
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Test (0  passed, 0 failed, 0 not run)
 
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