Site Name: Linux1.Amazon.ACIL
Build Name: CIP-Linux-3.14.35-28.38.amzn1.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20160219-0400-Nightly (related builds)
Time: 2016-02-19T00:03:31 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.14.35-28.38.amzn1.x86_64
OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015
Compiler Version: unknown
CTest version: ctest-2.8.12

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Configure (0 errors, 0 warnings)

Start Time: 2016-02-19T00:03:02 EST
End Time: 2016-02-19T00:03:26 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python
Installing cip_python tools in /home/ec2-user/Projects/CIP-build/CIP-build
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (21 errors, 0 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-02-19T00:03:31 EST
End Time: 2016-02-19T00:29:13 EST

[ 97%] Built target ITKIOPNG
[ 97%] Built target ITKIOPNG-all
[ 97%] Built target ITKIORAW-all
[ 97%] Built target ITKIOSiemens
[ 97%] Built target ITKIOSiemens-all
[ 97%] Built target ITKIOStimulate
[ 97%] Built target ITKIOStimulate-all
[ 97%] Building CXX object Modules/IO/TransformBase/src/CMakeFiles/ITKIOTransformBase.dir/itkTransformFactoryBase.cxx.o
virtual memory exhausted: Cannot allocate memory
Linking CXX shared library ../../../../lib/libITKIOTransformBase-4.9.so

c++: error: CMakeFiles/ITKIOTransformBase.dir/itkTransformFactoryBase.cxx.o: No such file or directory

[ 97%] Built target ITKIOTransformBase
[ 97%] Built target ITKIOTransformBase-all
[ 97%] Built target ITKIOTransformHDF5
[ 97%] Built target ITKIOTransformHDF5-all
[ 97%] Built target ITKIOTransformInsightLegacy
[ 97%] Built target ITKIOTransformInsightLegacy-all
[ 98%] Built target ITKIOTransformMatlab
[ 98%] Built target ITKIOTransformMatlab-all
[ 98%] Built target ITKIOVTK
[ 98%] Built target ITKIOVTK-all
Build Log line 2167


  File: CommandLineTools/ConvertDicom/Testing/ConvertDicomTest.cxx
  Line: 16 
Linking CXX executable itkCIPMergeChestLabelMapsImageFilterTEST
[ 18%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
Linking CXX executable cipChestRegionChestTypeLocationsIOTEST
[ 19%] Built target cipChestRegionChestTypeLocationsIOTEST
Linking CXX executable cipLobeSurfaceModelIOTEST
[ 19%] Built target cipLobeSurfaceModelIOTEST
[ 19%] Built target ConvertDicomLib
Linking CXX executable ../../bin/ConvertDicom
[ 20%] Built target ConvertDicom
[ 20%] Building CXX object CommandLineTools/ConvertDicom/CMakeFiles/ConvertDicomTest.dir/Testing/ConvertDicomTest.cxx.o

/.../CIP/CommandLineTools/ConvertDicom/Testing/ConvertDicomTest.cxx:16:1: fatal error: error writing to /tmp/ccv93vRR.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Linking CXX executable ../Testing/bin/ConvertDicomTest

c++: error: CMakeFiles/ConvertDicomTest.dir/Testing/ConvertDicomTest.cxx.o: No such file or directory

[ 20%] Built target ConvertDicomTest
[ 20%] Built target MergeParticleDataSetsLib
Linking CXX executable ../../bin/MergeParticleDataSets
[ 21%] Built target MergeParticleDataSets
Linking CXX executable ../Testing/bin/MergeParticleDataSetsTest
[ 22%] Built target MergeParticleDataSetsTest
[ 22%] Built target RemoveParticlesFromParticlesDataSetLib
Linking CXX executable ../../bin/RemoveParticlesFromParticlesDataSet
[ 23%] Built target RemoveParticlesFromParticlesDataSet
Linking CXX executable ../Testing/bin/RemoveParticlesFromParticlesDataSetTest
[ 60%] Built target ConvertLabelMapValueToChestRegionChestType
Linking CXX executable ../Testing/bin/ConvertLabelMapValueToChestRegionChestTypeTest
[ 61%] Built target ConvertLabelMapValueToChestRegionChestTypeTest
[ 61%] Built target GenerateRegionHistogramsAndParenchymaPhenotypesLib
Linking CXX executable ../../bin/GenerateRegionHistogramsAndParenchymaPhenotypes
[ 61%] Built target GenerateRegionHistogramsAndParenchymaPhenotypes
Linking CXX executable ../Testing/bin/GenerateRegionHistogramsAndParenchymaPhenotypesTest
[ 62%] Built target GenerateRegionHistogramsAndParenchymaPhenotypesTest
[ 62%] Built target ComputeDistanceMapLib
Linking CXX executable ../../bin/ComputeDistanceMap

collect2: error: ld returned 1 exit status

[ 63%] Built target ComputeDistanceMap
Linking CXX executable ../Testing/bin/ComputeDistanceMapTest
[ 64%] Built target ComputeDistanceMapTest
[ 65%] Built target PerturbParticlesLib
Linking CXX executable ../../bin/PerturbParticles
[ 65%] Built target PerturbParticles
Linking CXX executable ../Testing/bin/PerturbParticlesTest
[ 65%] Built target PerturbParticlesTest
[ 66%] Built target ReadWriteRegionAndTypePointsLib
Linking CXX executable ../../bin/ReadWriteRegionAndTypePoints
[ 66%] Built target ReadWriteRegionAndTypePointsTest
[ 67%] Built target PerformMorphologicalLib
Linking CXX executable ../../bin/PerformMorphological
[ 67%] Built target PerformMorphological
Linking CXX executable ../Testing/bin/PerformMorphologicalTest
[ 67%] Built target PerformMorphologicalTest
[ 67%] Built target GenerateOverlayImagesLib
Linking CXX executable ../../bin/GenerateOverlayImages
[ 68%] Built target GenerateOverlayImages
Linking CXX executable ../Testing/bin/GenerateOverlayImagesTest

collect2: error: ld returned 1 exit status

[ 68%] Built target GenerateOverlayImagesTest
[ 68%] Building CXX object CommandLineTools/GetTransformationSimilarityMetric/CMakeFiles/GetTransformationSimilarityMetricLib.dir/GetTransformationSimilarityMetric.cxx.o

Build Log line 2384


  File: CommandLineTools/GetTransformationSimilarityMetric/GetTransformationSimilarityMetric.cxx
  Line: 655 
/.../CIP/CommandLineTools/GetTransformationSimilarityMetric/GetTransformationSimilarityMetric.cxx:655:1: fatal error: error writing to /tmp/cc6vtGUs.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Linking CXX static library ../../bin/libGetTransformationSimilarityMetricLib.a

/usr/bin/ar: CMakeFiles/GetTransformationSimilarityMetricLib.dir/GetTransformationSimilarityMetric.cxx.o: No such file or directory

[ 68%] Built target GetTransformationSimilarityMetricLib

gmake[5]: *** No rule to make target `bin/libGetTransformationSimilarityMetricLib.a', needed by `bin/GetTransformationSimilarityMetric'.  Stop.

[ 68%] Built target GetTransformationSimilarityMetric

gmake[5]: *** No rule to make target `bin/libGetTransformationSimilarityMetricLib.a', needed by `CommandLineTools/Testing/bin/GetTransformationSimilarityMetricTest'.  Stop.

[ 69%] Built target GetTransformationSimilarityMetricTest
[ 69%] Built target GetTransformationKappa2DLib
Linking CXX executable ../../bin/GetTransformationKappa2D
[ 69%] Built target GetTransformationKappa2D
Linking CXX executable ../Testing/bin/GetTransformationKappa2DTest
[ 70%] Built target GetTransformationKappa2DTest
[ 70%] Built target GetTransformationKappaLib
Linking CXX executable ../../bin/GetTransformationKappa
[ 71%] Built target GetTransformationKappa
Linking CXX executable ../Testing/bin/GetTransformationKappaTest
Build Log line 2417


  File: CommandLineTools/GeneratePartialLungLabelMap/GeneratePartialLungLabelMap.cxx
  Line: 178 
Linking CXX executable ../../bin/ReadWriteImageData
[ 73%] Built target ReadWriteImageData
Linking CXX executable ../Testing/bin/ReadWriteImageDataTest
[ 73%] Built target ReadWriteImageDataTest
[ 74%] Built target GetStructuresInLabelMapLib
Linking CXX executable ../../bin/GetStructuresInLabelMap
[ 74%] Built target GetStructuresInLabelMap
Linking CXX executable ../Testing/bin/GetStructuresInLabelMapTest
[ 74%] Built target GetStructuresInLabelMapTest
[ 74%] Building CXX object CommandLineTools/GeneratePartialLungLabelMap/CMakeFiles/GeneratePartialLungLabelMapLib.dir/GeneratePartialLungLabelMap.cxx.o

/.../CIP/CommandLineTools/GeneratePartialLungLabelMap/GeneratePartialLungLabelMap.cxx:178:1: fatal error: error writing to /tmp/ccqFG5BL.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Linking CXX static library ../../bin/libGeneratePartialLungLabelMapLib.a

/usr/bin/ar: CMakeFiles/GeneratePartialLungLabelMapLib.dir/GeneratePartialLungLabelMap.cxx.o: No such file or directory

[ 74%] Built target GeneratePartialLungLabelMapLib

gmake[5]: *** No rule to make target `bin/libGeneratePartialLungLabelMapLib.a', needed by `bin/GeneratePartialLungLabelMap'.  Stop.

[ 75%] Built target GeneratePartialLungLabelMap

gmake[5]: *** No rule to make target `bin/libGeneratePartialLungLabelMapLib.a', needed by `CommandLineTools/Testing/bin/GeneratePartialLungLabelMapTest'.  Stop.

[ 76%] Built target GeneratePartialLungLabelMapTest
[ 77%] Built target ReadVidaWriteCIPLib
Linking CXX executable ../../bin/ReadVidaWriteCIP
[ 77%] Built target ReadVidaWriteCIP
Linking CXX executable ../Testing/bin/ReadVidaWriteCIPTest
[ 77%] Built target ReadVidaWriteCIPTest
[ 77%] Built target RegisterLabelMapsLib
Linking CXX executable ../../bin/RegisterLabelMaps
[ 77%] Built target RegisterLabelMaps
Linking CXX executable ../Testing/bin/RegisterLabelMapsTest
Build Log line 2440


  File: CommandLineTools/RegisterCT/RegisterCT.cxx
  Line: 978 
[ 78%] Built target RegisterLabelMapsTest
[ 78%] Building CXX object CommandLineTools/RegisterCT/CMakeFiles/RegisterCTLib.dir/RegisterCT.cxx.o

/.../CIP/CommandLineTools/RegisterCT/RegisterCT.cxx:978:1: fatal error: error writing to /tmp/cckSKpKn.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Linking CXX static library ../../bin/libRegisterCTLib.a

/usr/bin/ar: CMakeFiles/RegisterCTLib.dir/RegisterCT.cxx.o: No such file or directory

[ 78%] Built target RegisterCTLib

gmake[5]: *** No rule to make target `bin/libRegisterCTLib.a', needed by `bin/RegisterCT'.  Stop.

[ 79%] Built target RegisterCT

gmake[5]: *** No rule to make target `bin/libRegisterCTLib.a', needed by `CommandLineTools/Testing/bin/RegisterCTTest'.  Stop.

[ 80%] Built target RegisterCTTest
[ 80%] Built target MergeChestLabelMapsLib
Linking CXX executable ../../bin/MergeChestLabelMaps
[ 81%] Built target MergeChestLabelMaps
Linking CXX executable ../Testing/bin/MergeChestLabelMapsTest
[ 81%] Built target MergeChestLabelMapsTest
[ 82%] Built target MaskOutLabelMapStructuresLib
Linking CXX executable ../../bin/MaskOutLabelMapStructures
[ 82%] Built target MaskOutLabelMapStructures
Linking CXX executable ../Testing/bin/MaskOutLabelMapStructuresTest
Build Log line 2516


  File: CommandLineTools/GenerateLesionSegmentation/GenerateLesionSegmentation.cxx
  Line: 266 
Linking CXX static library ../../bin/libFitLobeSurfaceModelsToParticleDataLib.a
[ 93%] Built target FitLobeSurfaceModelsToParticleDataLib
Linking CXX executable ../../bin/FitLobeSurfaceModelsToParticleData
[ 93%] Built target FitLobeSurfaceModelsToParticleData
Scanning dependencies of target FitLobeSurfaceModelsToParticleDataTest
[ 93%] Building CXX object CommandLineTools/FitLobeSurfaceModelsToParticleData/CMakeFiles/FitLobeSurfaceModelsToParticleDataTest.dir/Testing/FitLobeSurfaceModelsToParticleDataTest.cxx.o
Linking CXX executable ../Testing/bin/FitLobeSurfaceModelsToParticleDataTest
[ 93%] Built target FitLobeSurfaceModelsToParticleDataTest
Scanning dependencies of target GenerateLesionSegmentationLib
[ 94%] Building CXX object CommandLineTools/GenerateLesionSegmentation/CMakeFiles/GenerateLesionSegmentationLib.dir/GenerateLesionSegmentation.cxx.o

/.../CIP/CommandLineTools/GenerateLesionSegmentation/GenerateLesionSegmentation.cxx:266:1: fatal error: error writing to /tmp/cca8Yk2s.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Linking CXX static library ../../bin/libGenerateLesionSegmentationLib.a

/usr/bin/ar: CMakeFiles/GenerateLesionSegmentationLib.dir/GenerateLesionSegmentation.cxx.o: No such file or directory

[ 94%] Built target GenerateLesionSegmentationLib

gmake[5]: *** No rule to make target `bin/libGenerateLesionSegmentationLib.a', needed by `bin/GenerateLesionSegmentation'.  Stop.

[ 94%] Built target GenerateLesionSegmentation
Scanning dependencies of target GenerateLesionSegmentationTest
[ 94%] Building CXX object CommandLineTools/GenerateLesionSegmentation/CMakeFiles/GenerateLesionSegmentationTest.dir/Testing/GenerateLesionSegmentationTest.cxx.o

gmake[5]: *** No rule to make target `bin/libGenerateLesionSegmentationLib.a', needed by `CommandLineTools/Testing/bin/GenerateLesionSegmentationTest'.  Stop.

[ 94%] Built target GenerateLesionSegmentationTest
Scanning dependencies of target RemapLabelMapLib
[ 95%] Building CXX object CommandLineTools/RemapLabelMap/CMakeFiles/RemapLabelMapLib.dir/RemapLabelMap.cxx.o
Linking CXX static library ../../bin/libRemapLabelMapLib.a
[ 95%] Built target RemapLabelMapLib
Linking CXX executable ../../bin/RemapLabelMap
[ 95%] Built target RemapLabelMap
Scanning dependencies of target RemapLabelMapTest
[ 95%] Building CXX object CommandLineTools/RemapLabelMap/CMakeFiles/RemapLabelMapTest.dir/Testing/RemapLabelMapTest.cxx.o
Linking CXX executable ../Testing/bin/RemapLabelMapTest
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Test (0  passed, 0 failed, 0 not run)
 
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