Site Name: Linux1.Amazon.ACIL
Build Name: CIP-master-Linux-3.14.35-28.38.amzn1.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20160206-0400-Nightly (related builds)
Time: 2016-02-06T00:16:45 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.14.35-28.38.amzn1.x86_64
OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015
Compiler Version: unknown
CTest version: ctest-2.8.12

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Stage: Update (0 errors, 0 warnings)

Start Time: 2016-02-06T00:16:12 EST
End Time: 2016-02-06T00:16:14 EST
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2016-02-06T00:16:15 EST
End Time: 2016-02-06T00:16:39 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP-master"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-master-build/CIP-build

View Configure Summary

Build (25 errors, 0 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-02-06T00:16:45 EST
End Time: 2016-02-06T00:20:15 EST

The following NEW packages will be INSTALLED:

    mkl:   11.3.1-0          

The following packages will be UPDATED:

    numpy: 1.10.2-py27_0      --> 1.10.4-py27_0     
    scipy: 0.16.1-np110py27_0 --> 0.17.0-np110py27_1


Error: Missing write permissions in: /.../CIP-master-build/CIPPython-install

#
# You don't appear to have the necessary permissions to install packages
# into the install area '/.../CIP-master-build/CIPPython-install'.
# However you can clone this environment into your home directory and
# then make changes to it.
# This may be done using the command:
#
# $ conda create -n my_root --clone=/.../CIP-master-build/CIPPython-install

[ 58%] Performing installvtk step for 'CIPPython'
    numpy-1.10.4               |           py27_0         6.0 MB

The following NEW packages will be INSTALLED:

    mkl:   11.3.1-0     

The following packages will be UPDATED:

    numpy: 1.10.2-py27_0 --> 1.10.4-py27_0


Error: Missing write permissions in: /.../CIP-master-build/CIPPython-install

#
# You don't appear to have the necessary permissions to install packages
# into the install area '/.../CIP-master-build/CIPPython-install'.
# However you can clone this environment into your home directory and
# then make changes to it.
# This may be done using the command:
#
# $ conda create -n my_root --clone=/.../CIP-master-build/CIPPython-install

[ 60%] Performing installnose step for 'CIPPython'
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions
-- Configuring done
-- Generating done
-- Build files have been written to: /.../CIP-master-build/CIP-build
Linking CXX static library /.../CIP-master-build/lib/libCIPUtilities.a
/usr/bin/ranlib: /.../CIP-master-build/lib/libCIPUtilities.a: No space left on device
[  2%] Built target CIPUtilities

gmake[5]: *** No rule to make target `Common/CMakeFiles/CIPCommon.dir/depend'.  Stop.

Linking CXX static library /.../CIP-master-build/lib/libCIPCommon.a
/usr/bin/ranlib: /.../CIP-master-build/lib/libCIPCommon.a: No space left on device
[ 15%] Built target CIPCommon
Linking CXX static library /.../CIP-master-build/lib/libChestConventions.a
/usr/bin/ar: /.../CIP-master-build/lib/libChestConventions.a: No space left on device
[ 16%] Built target ChestConventions
Linking CXX static library /.../CIP-master-build/lib/libCIPIO.a
[ 17%] Built target CIPIO
running build_ext
skipping '/.../CIP-master/cip_python/wrap_ChestConventions.cpp' Cython extension (up-to-date)
[ 17%] Built target CIP_PYTHON
Linking CXX executable cipHelperTEST

collect2: error: ld returned 1 exit status

[ 17%] Built target cipHelperTEST
Linking CXX executable cipLobeSurfaceModelTEST
[ 18%] Built target cipLobeSurfaceModelTEST
Linking CXX executable cipNelderMeadSimplexOptimizerTEST
[ 18%] Built target cipNelderMeadSimplexOptimizerTEST
Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST
[ 18%] Built target itkCIPExtractChestLabelMapImageFilterTEST
Linking CXX executable itkCIPMergeChestLabelMapsImageFilterTEST
[ 19%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
Linking CXX executable cipChestRegionChestTypeLocationsIOTEST
[ 23%] Built target MergeParticleDataSetsTest
[ 23%] Built target RemoveParticlesFromParticlesDataSetLib
Linking CXX executable ../../bin/RemoveParticlesFromParticlesDataSet
[ 24%] Built target RemoveParticlesFromParticlesDataSet
Linking CXX executable ../Testing/bin/RemoveParticlesFromParticlesDataSetTest
[ 24%] Built target RemoveParticlesFromParticlesDataSetTest
[ 25%] Built target ExtractParticlesFromChestRegionChestTypeLib
Linking CXX executable ../../bin/ExtractParticlesFromChestRegionChestType
[ 25%] Built target ExtractParticlesFromChestRegionChestType
Linking CXX executable ../Testing/bin/ExtractParticlesFromChestRegionChestTypeTest

collect2: error: ld returned 1 exit status

[ 25%] Built target ExtractParticlesFromChestRegionChestTypeTest
[ 26%] Built target GenerateOtsuLungCastLib
Linking CXX executable ../../bin/GenerateOtsuLungCast
[ 26%] Built target GenerateOtsuLungCast
Linking CXX executable ../Testing/bin/GenerateOtsuLungCastTest
[ 26%] Built target GenerateOtsuLungCastTest
[ 26%] Built target GenerateAtlasConvexHullLib
Linking CXX executable ../../bin/GenerateAtlasConvexHull
[ 26%] Built target GenerateAtlasConvexHull
Linking CXX executable ../Testing/bin/GenerateAtlasConvexHullTest
[ 31%] Built target ResampleCT
Linking CXX executable ../Testing/bin/ResampleCTTest
[ 32%] Built target ResampleCTTest
[ 33%] Built target QualityControlLib
Linking CXX executable ../../bin/QualityControl
[ 33%] Built target QualityControl
Linking CXX executable ../Testing/bin/QualityControlTest
[ 33%] Built target QualityControlTest
[ 34%] Built target RemoveChestTypeFromLabelMapUsingParticlesLib
Linking CXX executable ../../bin/RemoveChestTypeFromLabelMapUsingParticles

collect2: error: ld returned 1 exit status

[ 34%] Built target RemoveChestTypeFromLabelMapUsingParticles

gmake[5]: *** No rule to make target `CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/CMakeFiles/RemoveChestTypeFromLabelMapUsingParticlesTest.dir/depend'.  Stop.

gmake[5]: *** No rule to make target `CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/CMakeFiles/RemoveChestTypeFromLabelMapUsingParticlesTest.dir/build'.  Stop.

[ 34%] Built target RemoveChestTypeFromLabelMapUsingParticlesTest
[ 34%] Built target SegmentLungLobesLib
Linking CXX executable ../../bin/SegmentLungLobes

collect2: error: ld returned 1 exit status

[ 35%] Built target SegmentLungLobes

gmake[5]: *** No rule to make target `CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/depend'.  Stop.

Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 36%] Built target SegmentLungLobesTest
[ 37%] Built target ReadDicomWriteTagsLib
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 37%] Built target ReadDicomWriteTags
Linking CXX executable ../Testing/bin/ReadDicomWriteTagsTest
[ 37%] Built target ReadDicomWriteTagsTest
[ 38%] Built target SplitLeftLungRightLungLib
Linking CXX executable ../../bin/SplitLeftLungRightLung
[ 38%] Built target SplitLeftLungRightLung
Linking CXX executable ../Testing/bin/SplitLeftLungRightLungTest
[ 38%] Built target SplitLeftLungRightLungTest
[ 39%] Built target ExtractChestLabelMapLib
Linking CXX executable ../../bin/ExtractChestLabelMap
[ 39%] Built target ExtractChestLabelMap

gmake[5]: *** No rule to make target `CommandLineTools/ExtractChestLabelMap/CMakeFiles/ExtractChestLabelMapTest.dir/depend'.  Stop.

gmake[5]: *** No rule to make target `CommandLineTools/ExtractChestLabelMap/CMakeFiles/ExtractChestLabelMapTest.dir/build'.  Stop.

[ 39%] Built target ExtractChestLabelMapTest
[ 39%] Built target LabelParticlesByChestRegionChestTypeLib
Linking CXX executable ../../bin/LabelParticlesByChestRegionChestType
[ 40%] Built target LabelParticlesByChestRegionChestType
Linking CXX executable ../Testing/bin/LabelParticlesByChestRegionChestTypeTest
[ 41%] Built target LabelParticlesByChestRegionChestTypeTest
[ 42%] Built target GenerateStenciledLabelMapFromParticlesLib
Linking CXX executable ../../bin/GenerateStenciledLabelMapFromParticles

collect2: error: ld returned 1 exit status

[ 42%] Built target GenerateStenciledLabelMapFromParticles

gmake[5]: *** No rule to make target `CommandLineTools/GenerateStenciledLabelMapFromParticles/CMakeFiles/GenerateStenciledLabelMapFromParticlesTest.dir/depend'.  Stop.

gmake[5]: *** No rule to make target `CommandLineTools/GenerateStenciledLabelMapFromParticles/CMakeFiles/GenerateStenciledLabelMapFromParticlesTest.dir/build'.  Stop.

[ 42%] Built target GenerateStenciledLabelMapFromParticlesTest
[ 43%] Built target GenerateDistanceMapFromLabelMapLib
Linking CXX executable ../../bin/GenerateDistanceMapFromLabelMap
[ 43%] Built target GenerateDistanceMapFromLabelMap
Linking CXX executable ../Testing/bin/GenerateDistanceMapFromLabelMapTest
[ 43%] Built target GenerateDistanceMapFromLabelMapTest
[ 44%] Built target FilterVesselParticleDataLib
Linking CXX executable ../../bin/FilterVesselParticleData

collect2: error: ld returned 1 exit status

[ 44%] Built target FilterVesselParticleData

CMake Error: Target DependInfo.cmake file not found

Scanning dependencies of target CMakeF

CMake Error: Directory Information file not found

Linking CXX executable ../Testing/bin/FilterVesselParticleDataTest
[ 44%] Built target FilterVesselParticleDataTest
[ 45%] Built target FilterAirwayParticleDataLib
Linking CXX executable ../../bin/FilterAirwayParticleData
[ 45%] Built target FilterAirwayParticleData
Linking CXX executable ../Testing/bin/FilterAirwayParticleDataTest
[ 45%] Built target FilterAirwayParticleDataTest
[ 46%] Built target ScourParticleDataLib
Linking CXX executable ../../bin/ScourParticleData
[ 46%] Built target ScourParticleData
[ 48%] Built target ComputeCrossSectionalArea
Linking CXX executable ../Testing/bin/ComputeCrossSectionalAreaTest
[ 48%] Built target ComputeCrossSectionalAreaTest
[ 49%] Built target ComputeIntensityStatisticsLib
Linking CXX executable ../../bin/ComputeIntensityStatistics
[ 49%] Built target ComputeIntensityStatistics
Linking CXX executable ../Testing/bin/ComputeIntensityStatisticsTest
[ 49%] Built target ComputeIntensityStatisticsTest
[ 50%] Built target FilterFissureParticleDataLib
Linking CXX executable ../../bin/FilterFissureParticleData

collect2: error: ld returned 1 exit status

[ 50%] Built target FilterFissureParticleData
Linking CXX executable ../Testing/bin/FilterFissureParticleDataTest
[ 50%] Built target FilterFissureParticleDataTest
[ 50%] Built target GenerateLobeSurfaceModelsHelper
[ 51%] Built target GenerateLobeSurfaceModelsLib
Linking CXX executable ../../bin/GenerateLobeSurfaceModels
[ 51%] Built target GenerateLobeSurfaceModels

Build Log line 1981


  File: /home/ec2-user/Projects/CIP-master-build/CommandLineTools/GenerateLobeSurfaceModels/CMakeFiles/GenerateLobeSurfaceModelsTest.dir/build.make
  Line: 450 
CommandLineTools/GenerateLobeSurfaceModels/CMakeFiles/GenerateLobeSurfaceModelsTest.dir/build.make:450: *** missing separator.  Stop.

Build Log line 1982


  File: /home/ec2-user/Projects/CIP-master-build/CommandLineTools/GenerateLobeSurfaceModels/CMakeFiles/GenerateLobeSurfaceModelsTest.dir/build.make
  Line: 450 
CommandLineTools/GenerateLobeSurfaceModels/CMakeFiles/GenerateLobeSurfaceModelsTest.dir/build.make:450: *** missing separator.  Stop.

[ 51%] Built target GenerateLobeSurfaceModelsTest
[ 52%] Built target ClassifyFissureParticlesLib
Linking CXX executable ../../bin/ClassifyFissureParticles
[ 52%] Built target ClassifyFissureParticles
Linking CXX executable ../Testing/bin/ClassifyFissureParticlesTest
[ 52%] Built target ClassifyFissureParticlesTest
[ 53%] Built target CropLungLib
Linking CXX executable ../../bin/CropLung
[ 53%] Built target CropLung
Linking CXX executable ../Testing/bin/CropLungTest
collect2: error: ld returned 1 exit status

[ 53%] Built target CropLungTest
[ 53%] Built target GenerateModelLib
Linking CXX executable ../../bin/GenerateModel
[ 54%] Built target GenerateModel
Linking CXX executable ../Testing/bin/GenerateModelTest
[ 55%] Built target GenerateModelTest
[ 55%] Built target GenerateImageSubVolumesLib
Linking CXX executable ../../bin/GenerateImageSubVolumes
[ 56%] Built target GenerateImageSubVolumes
Linking CXX executable ../Testing/bin/GenerateImageSubVolumesTest
[ 56%] Built target GenerateImageSubVolumesTest
[ 56%] Built target GenerateMedianFilteredImageLib
Linking CXX executable ../../bin/GenerateMedianFilteredImage
[ 57%] Built target GenerateMedianFilteredImage
Linking CXX executable ../Testing/bin/GenerateMedianFilteredImageTest
[ 57%] Built target GenerateMedianFilteredImageTest
[ 57%] Built target EvaluateLungLobeSegmentationResultsLib
Linking CXX executable ../../bin/EvaluateLungLobeSegmentationResults
[ 58%] Built target EvaluateLungLobeSegmentationResults

gmake[5]: *** No rule to make target `CommandLineTools/EvaluateLungLobeSegmentationResults/CMakeFiles/EvaluateLungLobeSegmentationResultsTest.dir/depend'.  Stop.

Linking CXX executable ../Testing/bin/EvaluateLungLobeSegmentationResultsTest
[ 59%] Built target EvaluateLungLobeSegmentationResultsTest
[ 60%] Built target ConvertLabelMapValueToChestRegionChestTypeLib
Linking CXX executable ../../bin/ConvertLabelMapValueToChestRegionChestType
[ 60%] Built target ConvertLabelMapValueToChestRegionChestType
Linking CXX executable ../Testing/bin/ConvertLabelMapValueToChestRegionChestTypeTest
[ 60%] Built target ConvertLabelMapValueToChestRegionChestTypeTest
[ 60%] Built target GenerateRegionHistogramsAndParenchymaPhenotypesLib
Linking CXX executable ../../bin/GenerateRegionHistogramsAndParenchymaPhenotypes
[ 60%] Built target GenerateRegionHistogramsAndParenchymaPhenotypes
Linking CXX executable ../Testing/bin/ConvertChestRegionChestTypeToLabelMapValueTest
[ 89%] Built target ConvertChestRegionChestTypeToLabelMapValueTest
[ 89%] Built target FilterConnectedComponentsHelper
[ 90%] Built target FilterConnectedComponentsLib
Linking CXX executable ../../bin/FilterConnectedComponents
[ 91%] Built target FilterConnectedComponents
Linking CXX executable ../Testing/bin/FilterConnectedComponentsTest
[ 91%] Built target FilterConnectedComponentsTest
[ 92%] Built target EnhanceFissuresInImageLib
Linking CXX executable ../../bin/EnhanceFissuresInImage

collect2: error: ld returned 1 exit status

[ 92%] Built target EnhanceFissuresInImage

CMake Error: cmake version 2.8.12

Usage: /usr/bin/cmake -E [command] [arguments ...]
Available commands: 
  chdir dir cmd [args]...   - run command in a given directory
  compare_files file1 file2 - check if file1 is same as file2
  copy file destination     - copy file to destination (either file or directory)
  copy_directory source destination   - copy directory 'source' content to directory 'destination'
  copy_if_different in-file out-file  - copy file if input has changed
  echo [string]...          - displays arguments as text
  echo_append [string]...   - displays arguments as text but no new line
  environment               - display the current environment
View Errors Summary


Build Warnings (0)

View Warnings Summary


Test (0  passed, 0 failed, 0 not run)
 
View Tests Summary