| Site: bwh002376.bwh.harvard.edu |
| Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON |
| Build Time: 2018-10-16T23:01:56 EDT |
| Found 17 Warnings |
| Errors are here. |
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[ 10%] Performing update step for 'CIPPython' Current branch master is up to date. [ 12%] No configure step for 'CIPPython' [ 13%] No build step for 'CIPPython' [ 14%] Performing install step for 'CIPPython' /.../CIP-build/CIPPython-install already exists. Miniconda will not be installed [ 15%] Performing installtensorflow step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
twisted 18.9.0: | 0% twisted 18.9.0: | 0% twisted 18.9.0: #4 | 14% twisted 18.9.0: ####1 | 42% twisted 18.9.0: #######1 | 72% twisted 18.9.0: ########8 | 88% twisted 18.9.0: ########## | 100%
ca-certificates 2018.10.15: | 0% ca-certificates 2018.10.15: 8 | 9% ca-certificates 2018.10.15: ########## | 100%
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Requirement already satisfied: scipy>=0.14 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) Requirement already satisfied: numpy>=1.9.1 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) Requirement already satisfied: pyyaml in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) Requirement already satisfied: six>=1.9.0 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) You are using pip version 9.0.1, however version 18.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [ 18%] Performing installnipype step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
keepalive 0.5: | 0% keepalive 0.5: #######5 | 75% keepalive 0.5: ########## | 100%
simplejson 3.16.1: | 0% simplejson 3.16.1: #2 | 12% simplejson 3.16.1: ########## | 100%
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Downloading and Extracting Packages Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ 19%] Performing installnetworkx step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
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networkx: 2.1-py27_0 --> 1.11-py27_0 conda-forge
prov: 1.5.2-py_1 conda-forge --> 1.5.1-py27_0 conda-forge
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ 20%] Performing installscikit-image step for 'CIPPython'
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
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You are using pip version 9.0.1, however version 18.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [ 24%] Performing installnibabel step for 'CIPPython' Requirement already satisfied: nibabel in ./CIPPython-install/lib/python2.7/site-packages You are using pip version 9.0.1, however version 18.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [ 25%] Performing installnumpy step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
twisted 17.5.0: | 0% twisted 17.5.0: 5 | 5% twisted 17.5.0: #9 | 20% twisted 17.5.0: ###7 | 38% twisted 17.5.0: #####9 | 59% twisted 17.5.0: #######5 | 75% twisted 17.5.0: ########4 | 85% twisted 17.5.0: #########2 | 92% twisted 17.5.0: #########8 | 98% twisted 17.5.0: ########## | 100%
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Downloading and Extracting Packages Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ 26%] Performing installcython step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
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cython: 0.28.5-py27h0a44026_0 --> 0.29-py27h0a44026_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ 27%] Performing installscipy step for 'CIPPython'
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.
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[ 28%] Performing installvtk step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
libvorbis 1.3.6: | 0% libvorbis 1.3.6: 1 | 1% libvorbis 1.3.6: #####2 | 52% libvorbis 1.3.6: #######5 | 75% libvorbis 1.3.6: #########9 | 100% libvorbis 1.3.6: ########## | 100%
jsoncpp 1.8.4: | 0% jsoncpp 1.8.4: 7 | 7% jsoncpp 1.8.4: ########## | 100%
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Downloading and Extracting Packages Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ 30%] Performing installpandas step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.
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[ 31%] Performing installnose step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.
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[ 32%] Performing installsphinx step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
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sphinx: 1.7.9-py27_0 --> 1.8.1-py27_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ 33%] Performing installsimpleitk step for 'CIPPython'
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
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simpleitk: 1.1.0-py27h0a44026_0 SimpleITK
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ 34%] Performing installxml step for 'CIPPython'
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.
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[ 36%] Performing installscikit-learn step for 'CIPPython' Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
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[100%] Built target vtkIOTecplotTable [100%] Built target vtkInfovisBoostGraphAlgorithms [100%] Built target vtkTestingRendering [100%] Built target vtkViewsInfovis [ 55%] No install step for 'VTKv8' [ 56%] Completed 'VTKv8' [ 60%] Built target VTKv8 [ 61%] Performing update step for 'teem' [ 62%] Performing configure step for 'teem' loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake CMake Warning (dev) at CMakeLists.txt:555 (install): Policy CMP0062 is not set: Disallow install() of export() result. Run
"cmake --help-policy CMP0062" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The file
/.../CIP-build/teem-build/TeemLibraryDepends.cmake
was generated by the export() command. It should not be installed with the
install() command. Use the install(EXPORT) mechanism instead. See the
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cmake-packages(7) manual for more. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning (dev): Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: teem This warning is for project developers. Use -Wno-dev to suppress it. |
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[100%] Built target MGHIO [100%] Built target MGHIO-all [ 74%] No install step for 'ITKv4' [ 75%] Completed 'ITKv4' [ 79%] Built target ITKv4 [ 80%] Performing update step for 'SlicerExecutionModel' [ 81%] Performing configure step for 'SlicerExecutionModel' loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache-Release.cmake -- Configuring done -- Generating done CMake Warning (dev): Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: ModuleDescriptionParser This warning is for project developers. Use -Wno-dev to suppress it. |