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[ 39%] Performing update step for 'teem'
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loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

WARNING:
    You currently have a PYTHONPATH environment variable set. This may cause
    unexpected behavior when running the Python interpreter in Miniconda2.
    For best results, please verify that your PYTHONPATH only points to
    directories of packages that are compatible with the Python interpreter
    in Miniconda2: /.../CIP-build/CIPPython-install
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  current version: 4.4.10
  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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Requirement already satisfied: numpy>=1.9.1 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Installing collected packages: pyyaml, scipy, keras
Successfully installed keras-2.0.8 pyyaml-3.13 scipy-1.1.0
You are using pip version 9.0.1, however version 18.0 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
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  current version: 4.4.10
  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda



## Package Plan ##

Downloading and Extracting Packages
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  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda



## Package Plan ##

You are using pip version 9.0.1, however version 18.0 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 75%] Performing installnibabel step for 'CIPPython'
Requirement already satisfied: nibabel in ./CIPPython-install/lib/python2.7/site-packages
You are using pip version 9.0.1, however version 18.0 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
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  current version: 4.4.10
  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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  current version: 4.4.10
  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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Please update conda by running

    $ conda update -n base conda


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  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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==> WARNING: A newer version of conda exists. <==

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  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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  current version: 4.4.10
  latest version: 4.5.9

Please update conda by running

    $ conda update -n base conda


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/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::BOUNDINGBOX* cip::GeometryTopologyData::InsertBoundingBox(unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::StartType, cip::GeometryTopologyData::SizeType, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:104:15: warning: address of local variable ‘bb’ returned [-Wreturn-local-addr]

   BOUNDINGBOX bb;
               ^
/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::BOUNDINGBOX* cip::GeometryTopologyData::InsertBoundingBox(int, unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::StartType, cip::GeometryTopologyData::SizeType, std::string, std::string, std::string, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:157:15: warning: address of local variable ‘bb’ returned [-Wreturn-local-addr]

   BOUNDINGBOX bb;
               ^
/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::POINT* cip::GeometryTopologyData::InsertPoint(unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::CoordinateType, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:231:9: warning: address of local variable ‘p’ returned [-Wreturn-local-addr]

   POINT p;
         ^
/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::POINT* cip::GeometryTopologyData::InsertPoint(int, unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::CoordinateType, std::string, std::string, std::string, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:267:9: warning: address of local variable ‘p’ returned [-Wreturn-local-addr]

   POINT p;
         ^
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creating build/temp.linux-x86_64-2.7/home
creating build/temp.linux-x86_64-2.7/home/centos
creating build/temp.linux-x86_64-2.7/home/centos/Projects
creating build/temp.linux-x86_64-2.7/.../CIP
creating build/temp.linux-x86_64-2.7/.../CIP/cip_python
creating build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils
creating build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python
creating build/temp.linux-x86_64-2.7/.../CIP/Utilities
creating build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/cip_python/utils/gco_python/gco_python.cpp -o build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

In file included from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1823:0,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /.../CIP/cip_python/utils/gco_python/gco_python.cpp:449:

/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

 #warning "Using deprecated NumPy API, disable it by " \
  ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In constructor ‘GCoptimization::GCoptimization(GCoptimization::SiteID, GCoptimization::LabelID)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:311:10: warning: ‘GCoptimization::m_smoothcostFn’ will be initialized after [-Wreorder]

  void*   m_smoothcostFn;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:310:10: warning:   ‘void* GCoptimization::m_datacostFn’ [-Wreorder]

  void*   m_datacostFn;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:321:86: warning: ‘GCoptimization::m_setupDataCostsSwap’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_setupDataCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                      ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:319:83: warning:   ‘void (GCoptimization::* GCoptimization::m_setupDataCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]

  void (GCoptimization::*m_setupDataCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                   ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:322:88: warning: ‘GCoptimization::m_setupSmoothCostsSwap’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_setupSmoothCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                        ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:320:85: warning:   ‘void (GCoptimization::* GCoptimization::m_setupSmoothCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]

  void (GCoptimization::*m_setupSmoothCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                     ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:324:52: warning: ‘GCoptimization::m_updateLabelingDataCosts’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_updateLabelingDataCosts)();
                                                    ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:317:59: warning:   ‘GCoptimization::EnergyType (GCoptimization::* GCoptimization::m_giveSmoothEnergyInternal)()’ [-Wreorder]

  EnergyType (GCoptimization::*m_giveSmoothEnergyInternal)();
                                                           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:328:57: warning: ‘GCoptimization::m_solveSpecialCases’ will be initialized after [-Wreorder]

  bool (GCoptimization::*m_solveSpecialCases)(EnergyType&);
                                                         ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:326:36: warning:   ‘void (* GCoptimization::m_datacostFnDelete)(void*)’ [-Wreorder]

  void (*m_datacostFnDelete)(void* f);
                                    ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:327:38: warning: ‘GCoptimization::m_smoothcostFnDelete’ will be initialized after [-Wreorder]

  void (*m_smoothcostFnDelete)(void* f);
                                      ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:298:11: warning:   ‘int GCoptimization::m_random_label_order’ [-Wreorder]

  int      m_random_label_order;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:308:18: warning: ‘GCoptimization::m_verbosity’ will be initialized after [-Wreorder]

  int             m_verbosity;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning:   ‘bool GCoptimization::m_labelingInfoDirty’ [-Wreorder]

  bool            m_labelingInfoDirty;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning: ‘GCoptimization::m_labelingInfoDirty’ will be initialized after [-Wreorder]

  bool            m_labelingInfoDirty;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning:   ‘GCoptimization::SiteID* GCoptimization::m_lookupSiteVar’ [-Wreorder]

  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning: ‘GCoptimization::m_lookupSiteVar’ will be initialized after [-Wreorder]

  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:292:11: warning:   ‘GCoptimization::LabelID* GCoptimization::m_labeling’ [-Wreorder]

  LabelID *m_labeling;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:303:18: warning: ‘GCoptimization::m_activeLabelCounts’ will be initialized after [-Wreorder]

  SiteID*         m_activeLabelCounts;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:296:11: warning:   ‘int GCoptimization::m_stepsThisCycle’ [-Wreorder]

  int      m_stepsThisCycle;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimization::updateLabelingInfo(bool, bool, bool)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1177:15: warning: unused variable ‘energy’ [-Wunused-variable]

    EnergyType energy = 0;
               ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:121:26:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:769:30:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:111:0,
                 from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_sink_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:584:43:   required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33:   required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]

  if (i->parent = a0_min)
  ^
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_source_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:585:45:   required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33:   required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]

  if (i->parent = a0_min)
  ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunction]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:717:54:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunctionExtra]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:725:70:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimizationGridGraph::computeNeighborWeights(GCoptimization::EnergyTermType*, GCoptimization::EnergyTermType*)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1514:38: warning: ‘weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]

    m_neighborsWeights[i*4+n] = weight;
                                      ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/graph.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void LinkedBlockList::addFront(ListType)’:

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:18:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]

  m_head ->m_item[m_head_block_size] = item;
                                   ^
/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void* LinkedBlockList::next()’:

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:26:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]

  ListType toReturn = m_cursor -> m_item[m_cursor_ind];
                                                     ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/c++ -pthread -shared -B /.../CIP-build/CIPPython-install/compiler_compat -L/.../CIP-build/CIPPython-install/lib -Wl,-rpath=/.../CIP-build/CIPPython-install/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o -L/.../CIP/Utilities/GraphCutsOptimization -L/.../CIP-build/CIPPython-install/lib -lpython2.7 -o /.../CIP-build/CIP-build/cip_python/utils/pygco.so
[ 10%] Built target CIP_PYTHON
Scanning dependencies of target cipNelderMeadSimplexOptimizerTEST
[ 10%] Building CXX object Common/Testing/CMakeFiles/cipNelderMeadSimplexOptimizerTEST.dir/cipNelderMeadSimplexOptimizerTEST.cxx.o
[ 11%] Linking CXX executable cipNelderMeadSimplexOptimizerTEST
[ 11%] Built target cipNelderMeadSimplexOptimizerTEST
Scanning dependencies of target itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Building CXX object Common/Testing/CMakeFiles/itkCIPExtractChestLabelMapImageFilterTEST.dir/itkCIPExtractChestLabelMapImageFilterTEST.cxx.o
[ 11%] Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Built target itkCIPExtractChestLabelMapImageFilterTEST