[  4%] Performing update step for 'CIPPython'
Current branch master is up to date.
[  6%] No configure step for 'CIPPython'
[  7%] No build step for 'CIPPython'
[  8%] Performing install step for 'CIPPython'
/.../CIP-build-4.9.2/CIPPython-install already exists. Miniconda will not be installed
[  9%] Performing installtensorflow step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda


certifi 2018.4.16:            |   0% certifi 2018.4.16: 8          |   8% certifi 2018.4.16: #######6   |  77% certifi 2018.4.16: ########## | 100% 

Requirement already satisfied: pyyaml in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: six>=1.9.0 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: scipy>=0.14 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: numpy>=1.9.1 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 12%] Performing installnipype step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 13%] Performing installnetworkx step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 14%] Performing installscikit-image step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 18%] Performing installnibabel step for 'CIPPython'
Requirement already satisfied: nibabel in ./CIPPython-install/lib/python2.7/site-packages
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 19%] Performing installnumpy step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda


certifi 2018.4.16:            |   0% certifi 2018.4.16: 8          |   8% certifi 2018.4.16: ########1  |  82% certifi 2018.4.16: ########## | 100% 

Downloading and Extracting Packages
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ 20%] Performing installcython step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 21%] Performing installscipy step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 22%] Performing installvtk step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 24%] Performing installpandas step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 25%] Performing installnose step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 26%] Performing installsphinx step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 27%] Performing installsimpleitk step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 28%] Performing installxml step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 30%] Performing installscikit-learn step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

common.mkdir bin.v2/libs/coroutine
common.mkdir bin.v2/libs/coroutine/build
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/detail
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/detail/coroutine_context.o
In file included from ./boost/coroutine/detail/coroutine_context.hpp:16:0,
                 from libs/coroutine/src/detail/coroutine_context.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/exceptions.o
In file included from ./boost/coroutine/exceptions.hpp:19:0,
                 from libs/coroutine/src/exceptions.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/posix
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/posix/stack_traits.o
In file included from ./boost/coroutine/stack_traits.hpp:14:0,
                 from libs/coroutine/src/posix/stack_traits.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.archive bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_coroutine.a
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static/threading-multi/noop.o
gcc.archive bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static/threading-multi/libboost_stacktrace_noop.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_stacktrace_noop.a

In file included from ./boost/preprocessor/iteration/detail/iter/forward1.hpp:47:0,
                 from ./boost/type_erasure/detail/adapt_to_vtable.hpp:268,
                 from ./boost/type_erasure/call.hpp:33,
                 from ./boost/type_erasure/constructible.hpp:22,
                 from ./boost/type_erasure/builtin.hpp:17,
                 from ./boost/type_erasure/detail/normalize.hpp:34,
                 from ./boost/type_erasure/detail/check_map.hpp:24,
                 from ./boost/type_erasure/register_binding.hpp:14,
                 from libs/type_erasure/src/dynamic_binding.cpp:13:
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static R boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, R()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:315:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static boost::type_erasure::detail::storage boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, boost::type_erasure::detail::storage()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:332:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
gcc.archive bin.v2/libs/type_erasure/build/gcc-4.9.2/release/link-static/threading-multi/libboost_type_erasure.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_type_erasure.a
common.mkdir bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi
gcc.compile.c bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/alloc_lib.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/dlmalloc.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/global_resource.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/monotonic_buffer_resource.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/pool_resource.o

common.mkdir bin.v2/libs/context/build/gcc-4.9.2/release/threading-multi/posix
gcc.compile.c++ bin.v2/libs/context/build/gcc-4.9.2/release/threading-multi/posix/stack_traits.o
gcc.link.dll bin.v2/libs/context/build/gcc-4.9.2/release/threading-multi/libboost_context.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_context.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_context.so
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/detail
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/detail/coroutine_context.o
In file included from ./boost/coroutine/detail/coroutine_context.hpp:16:0,
                 from libs/coroutine/src/detail/coroutine_context.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/exceptions.o
In file included from ./boost/coroutine/exceptions.hpp:19:0,
                 from libs/coroutine/src/exceptions.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/posix
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/posix/stack_traits.o
In file included from ./boost/coroutine/stack_traits.hpp:14:0,
                 from libs/coroutine/src/posix/stack_traits.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.link.dll bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/libboost_coroutine.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_coroutine.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_coroutine.so
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release/threading-multi
gcc.compile.c++ bin.v2/libs/stacktrace/build/gcc-4.9.2/release/threading-multi/noop.o
gcc.link.dll bin.v2/libs/stacktrace/build/gcc-4.9.2/release/threading-multi/libboost_stacktrace_noop.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_stacktrace_noop.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_stacktrace_noop.so

In file included from ./boost/preprocessor/iteration/detail/iter/forward1.hpp:47:0,
                 from ./boost/type_erasure/detail/adapt_to_vtable.hpp:268,
                 from ./boost/type_erasure/call.hpp:33,
                 from ./boost/type_erasure/constructible.hpp:22,
                 from ./boost/type_erasure/builtin.hpp:17,
                 from ./boost/type_erasure/detail/normalize.hpp:34,
                 from ./boost/type_erasure/detail/check_map.hpp:24,
                 from ./boost/type_erasure/register_binding.hpp:14,
                 from libs/type_erasure/src/dynamic_binding.cpp:13:
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static R boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, R()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:315:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static boost::type_erasure::detail::storage boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, boost::type_erasure::detail::storage()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:332:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
gcc.link.dll bin.v2/libs/type_erasure/build/gcc-4.9.2/release/threading-multi/libboost_type_erasure.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_type_erasure.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_type_erasure.so
common.mkdir bin.v2/libs/system/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/system/build/gcc-4.9.2/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/system/build/gcc-4.9.2/release/link-static/threading-multi/error_code.o
gcc.archive bin.v2/libs/system/build/gcc-4.9.2/release/link-static/threading-multi/libboost_system.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_system.a

gcc.archive bin.v2/libs/chrono/build/gcc-4.9.2/release/link-static/threading-multi/libboost_chrono.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_chrono.a
common.mkdir bin.v2/libs/timer
common.mkdir bin.v2/libs/timer/build
common.mkdir bin.v2/libs/timer/build/gcc-4.9.2
common.mkdir bin.v2/libs/timer/build/gcc-4.9.2/release
common.mkdir bin.v2/libs/timer/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi/auto_timers_construction.o
In file included from libs/timer/src/auto_timers_construction.cpp:23:0:

./boost/timer/timer.hpp:44:43: warning: use of C++11 long long integer constant [-Wlong-long]

     void clear() { wall = user = system = 0LL; }
                                           ^
gcc.compile.c++ bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi/cpu_timer.o
In file included from libs/timer/src/cpu_timer.cpp:16:0:

./boost/timer/timer.hpp:44:43: warning: use of C++11 long long integer constant [-Wlong-long]

     void clear() { wall = user = system = 0LL; }
                                           ^

libs/timer/src/cpu_timer.cpp:108:23: warning: use of C++11 long long integer constant [-Wlong-long]

         tick_factor = 1000000000LL / tick_factor;  // compute factor
                       ^
gcc.archive bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi/libboost_timer.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_timer.a
common.mkdir bin.v2/libs/test
common.mkdir bin.v2/libs/test/build
common.mkdir bin.v2/libs/test/build/gcc-4.9.2
common.mkdir bin.v2/libs/test/build/gcc-4.9.2/release
common.mkdir bin.v2/libs/test/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/test/build/gcc-4.9.2/release/link-static/threading-multi

[ 69%] Completed 'ITKv4'
[ 69%] Built target ITKv4
Scanning dependencies of target teem
[ 71%] Creating directories for 'teem'
[ 72%] Performing download step (git clone) for 'teem'
-- Avoiding repeated git clone, stamp file is up to date: '/.../CIP-build-4.9.2/teem-prefix/src/teem-stamp/teem-gitclone-lastrun.txt'
[ 73%] No patch step for 'teem'
[ 74%] Performing update step for 'teem'
[ 75%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build-4.9.2/teem-prefix/tmp/teem-cache-Release.cmake

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build-4.9.2/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the