common.mkdir bin.v2/libs/coroutine
common.mkdir bin.v2/libs/coroutine/build
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release/link-static
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release/link-static/threading-multi
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release/link-static/threading-multi/detail
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8/release/link-static/threading-multi/detail/coroutine_context.o
In file included from ./boost/coroutine/detail/coroutine_context.hpp:16:0,
                 from libs/coroutine/src/detail/coroutine_context.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8/release/link-static/threading-multi/exceptions.o
In file included from ./boost/coroutine/exceptions.hpp:19:0,
                 from libs/coroutine/src/exceptions.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release/link-static/threading-multi/posix
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8/release/link-static/threading-multi/posix/stack_traits.o
In file included from ./boost/coroutine/stack_traits.hpp:14:0,
                 from libs/coroutine/src/posix/stack_traits.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.archive bin.v2/libs/coroutine/build/gcc-4.8/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../CIP-build/Boost-install/lib/libboost_coroutine.a
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.8/release
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.8/release/link-static
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.8/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/stacktrace/build/gcc-4.8/release/link-static/threading-multi/noop.o
gcc.archive bin.v2/libs/stacktrace/build/gcc-4.8/release/link-static/threading-multi/libboost_stacktrace_noop.a
common.copy /.../CIP-build/Boost-install/lib/libboost_stacktrace_noop.a

In file included from ./boost/preprocessor/iteration/detail/iter/forward1.hpp:47:0,
                 from ./boost/type_erasure/detail/adapt_to_vtable.hpp:268,
                 from ./boost/type_erasure/call.hpp:33,
                 from ./boost/type_erasure/constructible.hpp:22,
                 from ./boost/type_erasure/builtin.hpp:17,
                 from ./boost/type_erasure/detail/normalize.hpp:34,
                 from ./boost/type_erasure/detail/check_map.hpp:24,
                 from ./boost/type_erasure/register_binding.hpp:14,
                 from libs/type_erasure/src/dynamic_binding.cpp:13:
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static R boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, R()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:315:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static boost::type_erasure::detail::storage boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, boost::type_erasure::detail::storage()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:332:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
gcc.archive bin.v2/libs/type_erasure/build/gcc-4.8/release/link-static/threading-multi/libboost_type_erasure.a
common.copy /.../CIP-build/Boost-install/lib/libboost_type_erasure.a
common.mkdir bin.v2/libs/container/build/gcc-4.8/release/threading-multi
gcc.compile.c bin.v2/libs/container/build/gcc-4.8/release/threading-multi/alloc_lib.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.8/release/threading-multi/dlmalloc.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.8/release/threading-multi/global_resource.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.8/release/threading-multi/monotonic_buffer_resource.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.8/release/threading-multi/pool_resource.o

common.mkdir bin.v2/libs/context/build/gcc-4.8/release/threading-multi/posix
gcc.compile.c++ bin.v2/libs/context/build/gcc-4.8/release/threading-multi/posix/stack_traits.o
gcc.link.dll bin.v2/libs/context/build/gcc-4.8/release/threading-multi/libboost_context.so.1.65.1
common.copy /.../CIP-build/Boost-install/lib/libboost_context.so.1.65.1
ln-UNIX /.../CIP-build/Boost-install/lib/libboost_context.so
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release/threading-multi
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release/threading-multi/detail
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8/release/threading-multi/detail/coroutine_context.o
In file included from ./boost/coroutine/detail/coroutine_context.hpp:16:0,
                 from libs/coroutine/src/detail/coroutine_context.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8/release/threading-multi/exceptions.o
In file included from ./boost/coroutine/exceptions.hpp:19:0,
                 from libs/coroutine/src/exceptions.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8/release/threading-multi/posix
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8/release/threading-multi/posix/stack_traits.o
In file included from ./boost/coroutine/stack_traits.hpp:14:0,
                 from libs/coroutine/src/posix/stack_traits.cpp:7:

./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]

 #  warning                  "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
    ^
gcc.link.dll bin.v2/libs/coroutine/build/gcc-4.8/release/threading-multi/libboost_coroutine.so.1.65.1
common.copy /.../CIP-build/Boost-install/lib/libboost_coroutine.so.1.65.1
ln-UNIX /.../CIP-build/Boost-install/lib/libboost_coroutine.so
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.8/release/threading-multi
gcc.compile.c++ bin.v2/libs/stacktrace/build/gcc-4.8/release/threading-multi/noop.o
gcc.link.dll bin.v2/libs/stacktrace/build/gcc-4.8/release/threading-multi/libboost_stacktrace_noop.so.1.65.1
common.copy /.../CIP-build/Boost-install/lib/libboost_stacktrace_noop.so.1.65.1
ln-UNIX /.../CIP-build/Boost-install/lib/libboost_stacktrace_noop.so

In file included from ./boost/preprocessor/iteration/detail/iter/forward1.hpp:47:0,
                 from ./boost/type_erasure/detail/adapt_to_vtable.hpp:268,
                 from ./boost/type_erasure/call.hpp:33,
                 from ./boost/type_erasure/constructible.hpp:22,
                 from ./boost/type_erasure/builtin.hpp:17,
                 from ./boost/type_erasure/detail/normalize.hpp:34,
                 from ./boost/type_erasure/detail/check_map.hpp:24,
                 from ./boost/type_erasure/register_binding.hpp:14,
                 from libs/type_erasure/src/dynamic_binding.cpp:13:
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static R boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, R()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:315:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static boost::type_erasure::detail::storage boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, boost::type_erasure::detail::storage()>::value()’:

./boost/type_erasure/detail/adapt_to_vtable.hpp:332:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]

         > traits;
           ^
gcc.link.dll bin.v2/libs/type_erasure/build/gcc-4.8/release/threading-multi/libboost_type_erasure.so.1.65.1
common.copy /.../CIP-build/Boost-install/lib/libboost_type_erasure.so.1.65.1
ln-UNIX /.../CIP-build/Boost-install/lib/libboost_type_erasure.so
common.mkdir bin.v2/libs/system/build/gcc-4.8/release/link-static
common.mkdir bin.v2/libs/system/build/gcc-4.8/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/system/build/gcc-4.8/release/link-static/threading-multi/error_code.o
gcc.archive bin.v2/libs/system/build/gcc-4.8/release/link-static/threading-multi/libboost_system.a
common.copy /.../CIP-build/Boost-install/lib/libboost_system.a

gcc.archive bin.v2/libs/chrono/build/gcc-4.8/release/link-static/threading-multi/libboost_chrono.a
common.copy /.../CIP-build/Boost-install/lib/libboost_chrono.a
common.mkdir bin.v2/libs/timer
common.mkdir bin.v2/libs/timer/build
common.mkdir bin.v2/libs/timer/build/gcc-4.8
common.mkdir bin.v2/libs/timer/build/gcc-4.8/release
common.mkdir bin.v2/libs/timer/build/gcc-4.8/release/link-static
common.mkdir bin.v2/libs/timer/build/gcc-4.8/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/timer/build/gcc-4.8/release/link-static/threading-multi/auto_timers_construction.o
In file included from libs/timer/src/auto_timers_construction.cpp:23:0:

./boost/timer/timer.hpp:44:43: warning: use of C++0x long long integer constant [-Wlong-long]

     void clear() { wall = user = system = 0LL; }
                                           ^
gcc.compile.c++ bin.v2/libs/timer/build/gcc-4.8/release/link-static/threading-multi/cpu_timer.o
In file included from libs/timer/src/cpu_timer.cpp:16:0:

./boost/timer/timer.hpp:44:43: warning: use of C++0x long long integer constant [-Wlong-long]

     void clear() { wall = user = system = 0LL; }
                                           ^

libs/timer/src/cpu_timer.cpp:108:23: warning: use of C++0x long long integer constant [-Wlong-long]

         tick_factor = 1000000000LL / tick_factor;  // compute factor
                       ^
gcc.archive bin.v2/libs/timer/build/gcc-4.8/release/link-static/threading-multi/libboost_timer.a
common.copy /.../CIP-build/Boost-install/lib/libboost_timer.a
common.mkdir bin.v2/libs/test
common.mkdir bin.v2/libs/test/build
common.mkdir bin.v2/libs/test/build/gcc-4.8
common.mkdir bin.v2/libs/test/build/gcc-4.8/release
common.mkdir bin.v2/libs/test/build/gcc-4.8/release/link-static
common.mkdir bin.v2/libs/test/build/gcc-4.8/release/link-static/threading-multi

[ 49%] Performing update step for 'CIPPython'
Current branch master is up to date.
[ 50%] No configure step for 'CIPPython'
[ 51%] No build step for 'CIPPython'
[ 53%] Performing install step for 'CIPPython'
/.../CIP-build/CIPPython-install already exists. Miniconda will not be installed
[ 54%] Performing installnipype step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda


certifi 2018.4.16:            |   0% certifi 2018.4.16: 8          |   8% certifi 2018.4.16: ########## | 100% 

Downloading and Extracting Packages
Preparing transaction: ...working... done
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[ 55%] Performing installnetworkx step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 56%] Performing installscikit-image step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 57%] Performing installtensorflow step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.5

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 62%] Performing installnibabel step for 'CIPPython'
Requirement already satisfied: nibabel in ./CIPPython-install/lib/python2.7/site-packages
You are using pip version 9.0.1, however version 10.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 63%] Performing installnumpy step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda


certifi 2018.4.16:            |   0% certifi 2018.4.16: ########## | 100% 
numpy-base 1.14.5:            |   0% numpy-base 1.14.5: #######5   |  75% numpy-base 1.14.5: ########7  |  87% numpy-base 1.14.5: #########3 |  93% numpy-base 1.14.5: #########8 |  99% numpy-base 1.14.5: ########## | 100% 

Downloading and Extracting Packages
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ 65%] Performing installcython step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 66%] Performing installscipy step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 67%] Performing installvtk step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 68%] Performing installpandas step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 69%] Performing installnose step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 71%] Performing installsphinx step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 72%] Performing installsimpleitk step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 73%] Performing installxml step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 74%] Performing installscikit-learn step for 'CIPPython'
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.4.10
  latest version: 4.5.4

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.

[ 75%] Completed 'CIPPython'
[ 79%] Built target CIPPython
[ 80%] Creating directories for 'teem'
[ 81%] Performing download step (git clone) for 'teem'
-- Avoiding repeated git clone, stamp file is up to date: '/.../CIP-build/teem-prefix/src/teem-stamp/teem-gitclone-lastrun.txt'
[ 83%] No patch step for 'teem'
[ 84%] Performing update step for 'teem'
[ 85%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
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/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::BOUNDINGBOX* cip::GeometryTopologyData::InsertBoundingBox(unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::StartType, cip::GeometryTopologyData::SizeType, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:104:15: warning: address of local variable ‘bb’ returned [-Wreturn-local-addr]

   BOUNDINGBOX bb;
               ^
/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::BOUNDINGBOX* cip::GeometryTopologyData::InsertBoundingBox(int, unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::StartType, cip::GeometryTopologyData::SizeType, std::string, std::string, std::string, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:157:15: warning: address of local variable ‘bb’ returned [-Wreturn-local-addr]

   BOUNDINGBOX bb;
               ^
/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::POINT* cip::GeometryTopologyData::InsertPoint(unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::CoordinateType, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:231:9: warning: address of local variable ‘p’ returned [-Wreturn-local-addr]

   POINT p;
         ^
/.../CIP/Common/cipGeometryTopologyData.cxx: In member function ‘cip::GeometryTopologyData::POINT* cip::GeometryTopologyData::InsertPoint(int, unsigned char, unsigned char, unsigned char, cip::GeometryTopologyData::CoordinateType, std::string, std::string, std::string, std::string)’:

/.../CIP/Common/cipGeometryTopologyData.cxx:267:9: warning: address of local variable ‘p’ returned [-Wreturn-local-addr]

   POINT p;
         ^
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkSimpleLungMask.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkImageStatistics.cxx.o
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[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkComputeAirwayWallPolyData.cxx.o
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkImageResliceWithPlane.cxx.o
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkComputeCentroid.cxx.o
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[  9%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipLobeSurfaceModelIO.cxx.o
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[ 10%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipGeometryTopologyDataIO.cxx.o
[ 10%] Linking CXX static library /.../CIP-build/lib/libCIPIO.a
[ 10%] Built target CIPIO
running build_ext
skipping '/.../CIP/cip_python/utils/gco_python/gco_python.cpp' Cython extension (up-to-date)
building 'pygco' extension
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/cip_python/utils/gco_python/gco_python.cpp -o build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

In file included from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1818:0,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /.../CIP/cip_python/utils/gco_python/gco_python.cpp:449:

/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

 #warning "Using deprecated NumPy API, disable it by " \
  ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In constructor ‘GCoptimization::GCoptimization(GCoptimization::SiteID, GCoptimization::LabelID)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:311:10: warning: ‘GCoptimization::m_smoothcostFn’ will be initialized after [-Wreorder]

  void*   m_smoothcostFn;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:310:10: warning:   ‘void* GCoptimization::m_datacostFn’ [-Wreorder]

  void*   m_datacostFn;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:321:86: warning: ‘GCoptimization::m_setupDataCostsSwap’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_setupDataCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                      ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:319:83: warning:   ‘void (GCoptimization::* GCoptimization::m_setupDataCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]

  void (GCoptimization::*m_setupDataCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                   ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:322:88: warning: ‘GCoptimization::m_setupSmoothCostsSwap’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_setupSmoothCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                        ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:320:85: warning:   ‘void (GCoptimization::* GCoptimization::m_setupSmoothCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]

  void (GCoptimization::*m_setupSmoothCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                     ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:324:52: warning: ‘GCoptimization::m_updateLabelingDataCosts’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_updateLabelingDataCosts)();
                                                    ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:317:59: warning:   ‘GCoptimization::EnergyType (GCoptimization::* GCoptimization::m_giveSmoothEnergyInternal)()’ [-Wreorder]

  EnergyType (GCoptimization::*m_giveSmoothEnergyInternal)();
                                                           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:328:57: warning: ‘GCoptimization::m_solveSpecialCases’ will be initialized after [-Wreorder]

  bool (GCoptimization::*m_solveSpecialCases)(EnergyType&);
                                                         ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:326:36: warning:   ‘void (* GCoptimization::m_datacostFnDelete)(void*)’ [-Wreorder]

  void (*m_datacostFnDelete)(void* f);
                                    ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:327:38: warning: ‘GCoptimization::m_smoothcostFnDelete’ will be initialized after [-Wreorder]

  void (*m_smoothcostFnDelete)(void* f);
                                      ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:298:11: warning:   ‘int GCoptimization::m_random_label_order’ [-Wreorder]

  int      m_random_label_order;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:308:18: warning: ‘GCoptimization::m_verbosity’ will be initialized after [-Wreorder]

  int             m_verbosity;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning:   ‘bool GCoptimization::m_labelingInfoDirty’ [-Wreorder]

  bool            m_labelingInfoDirty;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning: ‘GCoptimization::m_labelingInfoDirty’ will be initialized after [-Wreorder]

  bool            m_labelingInfoDirty;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning:   ‘GCoptimization::SiteID* GCoptimization::m_lookupSiteVar’ [-Wreorder]

  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning: ‘GCoptimization::m_lookupSiteVar’ will be initialized after [-Wreorder]

  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:292:11: warning:   ‘GCoptimization::LabelID* GCoptimization::m_labeling’ [-Wreorder]

  LabelID *m_labeling;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:303:18: warning: ‘GCoptimization::m_activeLabelCounts’ will be initialized after [-Wreorder]

  SiteID*         m_activeLabelCounts;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:296:11: warning:   ‘int GCoptimization::m_stepsThisCycle’ [-Wreorder]

  int      m_stepsThisCycle;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimization::updateLabelingInfo(bool, bool, bool)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1177:15: warning: unused variable ‘energy’ [-Wunused-variable]

    EnergyType energy = 0;
               ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:121:26:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:769:30:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:111:0,
                 from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_sink_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:584:43:   required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33:   required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]

  if (i->parent = a0_min)
  ^
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_source_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:585:45:   required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33:   required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]

  if (i->parent = a0_min)
  ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunction]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:717:54:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunctionExtra]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:725:70:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimizationGridGraph::computeNeighborWeights(GCoptimization::EnergyTermType*, GCoptimization::EnergyTermType*)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1514:38: warning: ‘weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]

    m_neighborsWeights[i*4+n] = weight;
                                      ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/graph.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void LinkedBlockList::addFront(ListType)’:

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:18:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]

  m_head ->m_item[m_head_block_size] = item;
                                   ^
/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void* LinkedBlockList::next()’:

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:26:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]

  ListType toReturn = m_cursor -> m_item[m_cursor_ind];
                                                     ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/c++ -pthread -shared -B /.../CIP-build/CIPPython-install/compiler_compat -L/.../CIP-build/CIPPython-install/lib -Wl,-rpath=/.../CIP-build/CIPPython-install/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o -L/.../CIP/Utilities/GraphCutsOptimization -L/.../CIP-build/CIPPython-install/lib -lpython2.7 -o /.../CIP-build/CIP-build/cip_python/utils/pygco.so
[ 10%] Built target CIP_PYTHON
Scanning dependencies of target cipNelderMeadSimplexOptimizerTEST
[ 10%] Building CXX object Common/Testing/CMakeFiles/cipNelderMeadSimplexOptimizerTEST.dir/cipNelderMeadSimplexOptimizerTEST.cxx.o
[ 11%] Linking CXX executable cipNelderMeadSimplexOptimizerTEST
[ 11%] Built target cipNelderMeadSimplexOptimizerTEST
Scanning dependencies of target itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Building CXX object Common/Testing/CMakeFiles/itkCIPExtractChestLabelMapImageFilterTEST.dir/itkCIPExtractChestLabelMapImageFilterTEST.cxx.o
[ 11%] Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Built target itkCIPExtractChestLabelMapImageFilterTEST