common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread/thread.o
In file included from ./boost/bind/bind.hpp:29:0,
                 from ./boost/bind.hpp:22,
                 from ./boost/thread/detail/thread.hpp:29,
                 from ./boost/thread/thread_only.hpp:22,
                 from libs/thread/src/pthread/thread.cpp:11:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:

./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]

         typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
                      ^
In file included from ./boost/tuple/tuple.hpp:33:0,
                 from ./boost/thread/detail/async_func.hpp:37,
                 from ./boost/thread/future.hpp:22,
                 from libs/thread/src/pthread/thread.cpp:19:
./boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:

./boost/tuple/detail/tuple_basic.hpp:228:45: warning: typedef ‘cons_element’ locally defined but not used [-Wunused-local-typedefs]

   typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
                                             ^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread/once.o
In file included from ./boost/bind/bind.hpp:29:0,
                 from ./boost/bind.hpp:22,
                 from ./boost/thread/pthread/once_atomic.hpp:19,
                 from ./boost/thread/once.hpp:20,
                 from libs/thread/src/pthread/./once_atomic.cpp:9,
                 from libs/thread/src/pthread/once.cpp:8:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:

./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]

         typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
                      ^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/future.o
gcc.link.dll bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/libboost_thread.so.1.54.0
common.copy /.../CIP-build/Boost-install/lib/libboost_thread.so.1.54.0
ln-UNIX /.../CIP-build/Boost-install/lib/libboost_thread.so
common.mkdir bin.v2/libs/context/build
common.mkdir bin.v2/libs/context/build/gcc-4.8.2
common.mkdir bin.v2/libs/context/build/gcc-4.8.2/release
common.mkdir bin.v2/libs/context/build/gcc-4.8.2/release/link-static

common.copy /.../CIP-build/Boost-install/lib/libboost_context.a
common.mkdir bin.v2/libs/coroutine
common.mkdir bin.v2/libs/coroutine/build
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi
common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/detail
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/detail/standard_stack_allocator_posix.o
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp: In function ‘rlimit boost::coroutines::detail::stacksize_limit_()’:

libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:61:15: warning: unused variable ‘result’ [-Wunused-variable]

     const int result = ::getrlimit( RLIMIT_STACK, & limit);
               ^
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp: In member function ‘void boost::coroutines::detail::standard_stack_allocator::allocate(boost::coroutines::stack_context&, std::size_t)’:

libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:135:15: warning: unused variable ‘result’ [-Wunused-variable]

     const int result( ::mprotect( limit, detail::pagesize(), PROT_NONE) );
               ^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/detail/coroutine_context.o
gcc.archive bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../CIP-build/Boost-install/lib/libboost_coroutine.a
common.mkdir /.../CIP-build/Boost-install/include
common.mkdir /.../CIP-build/Boost-install/include/boost
common.copy /.../CIP-build/Boost-install/include/boost/._aligned_storage.hpp
common.copy /.../CIP-build/Boost-install/include/boost/aligned_storage.hpp
common.copy /.../CIP-build/Boost-install/include/boost/._any.hpp

common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/thread.o
In file included from ./boost/bind/bind.hpp:29:0,
                 from ./boost/bind.hpp:22,
                 from ./boost/thread/detail/thread.hpp:29,
                 from ./boost/thread/thread_only.hpp:22,
                 from libs/thread/src/pthread/thread.cpp:11:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:

./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]

         typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
                      ^
In file included from ./boost/tuple/tuple.hpp:33:0,
                 from ./boost/thread/detail/async_func.hpp:37,
                 from ./boost/thread/future.hpp:22,
                 from libs/thread/src/pthread/thread.cpp:19:
./boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:

./boost/tuple/detail/tuple_basic.hpp:228:45: warning: typedef ‘cons_element’ locally defined but not used [-Wunused-local-typedefs]

   typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
                                             ^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/once.o
In file included from ./boost/bind/bind.hpp:29:0,
                 from ./boost/bind.hpp:22,
                 from ./boost/thread/pthread/once_atomic.hpp:19,
                 from ./boost/thread/once.hpp:20,
                 from libs/thread/src/pthread/./once_atomic.cpp:9,
                 from libs/thread/src/pthread/once.cpp:8:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:

./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]

         typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
                      ^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/future.o
gcc.archive bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/libboost_thread.a
common.copy /.../CIP-build/Boost-install/lib/libboost_thread.a
...updated 20378 targets...
[ 47%] Performing build step for 'Boost'
Usage

  cmake [options] <path-to-source>

-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Check the value of the 22nd bit of a 32-bit quiet-NaN
-- Check the value of the 22nd bit of a 32-bit quiet-NaN - 1
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") 

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

creating build/temp.linux-x86_64-2.7/home
creating build/temp.linux-x86_64-2.7/home/ec2-user
creating build/temp.linux-x86_64-2.7/home/ec2-user/Projects
creating build/temp.linux-x86_64-2.7/.../CIP
creating build/temp.linux-x86_64-2.7/.../CIP/cip_python
creating build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils
creating build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python
creating build/temp.linux-x86_64-2.7/.../CIP/Utilities
creating build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/cip_python/utils/gco_python/gco_python.cpp -o build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

In file included from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /.../CIP/cip_python/utils/gco_python/gco_python.cpp:449:

/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

 #warning "Using deprecated NumPy API, disable it by " \
  ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In constructor ‘GCoptimization::GCoptimization(GCoptimization::SiteID, GCoptimization::LabelID)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:311:10: warning: ‘GCoptimization::m_smoothcostFn’ will be initialized after [-Wreorder]

  void*   m_smoothcostFn;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:310:10: warning:   ‘void* GCoptimization::m_datacostFn’ [-Wreorder]

  void*   m_datacostFn;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:321:86: warning: ‘GCoptimization::m_setupDataCostsSwap’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_setupDataCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                      ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:319:83: warning:   ‘void (GCoptimization::* GCoptimization::m_setupDataCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]

  void (GCoptimization::*m_setupDataCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                   ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:322:88: warning: ‘GCoptimization::m_setupSmoothCostsSwap’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_setupSmoothCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                        ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:320:85: warning:   ‘void (GCoptimization::* GCoptimization::m_setupSmoothCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]

  void (GCoptimization::*m_setupSmoothCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                     ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:324:52: warning: ‘GCoptimization::m_updateLabelingDataCosts’ will be initialized after [-Wreorder]

  void (GCoptimization::*m_updateLabelingDataCosts)();
                                                    ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:317:59: warning:   ‘GCoptimization::EnergyType (GCoptimization::* GCoptimization::m_giveSmoothEnergyInternal)()’ [-Wreorder]

  EnergyType (GCoptimization::*m_giveSmoothEnergyInternal)();
                                                           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:328:57: warning: ‘GCoptimization::m_solveSpecialCases’ will be initialized after [-Wreorder]

  bool (GCoptimization::*m_solveSpecialCases)(EnergyType&);
                                                         ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:326:36: warning:   ‘void (* GCoptimization::m_datacostFnDelete)(void*)’ [-Wreorder]

  void (*m_datacostFnDelete)(void* f);
                                    ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:327:38: warning: ‘GCoptimization::m_smoothcostFnDelete’ will be initialized after [-Wreorder]

  void (*m_smoothcostFnDelete)(void* f);
                                      ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:298:11: warning:   ‘int GCoptimization::m_random_label_order’ [-Wreorder]

  int      m_random_label_order;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:308:18: warning: ‘GCoptimization::m_verbosity’ will be initialized after [-Wreorder]

  int             m_verbosity;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning:   ‘bool GCoptimization::m_labelingInfoDirty’ [-Wreorder]

  bool            m_labelingInfoDirty;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning: ‘GCoptimization::m_labelingInfoDirty’ will be initialized after [-Wreorder]

  bool            m_labelingInfoDirty;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning:   ‘GCoptimization::SiteID* GCoptimization::m_lookupSiteVar’ [-Wreorder]

  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning: ‘GCoptimization::m_lookupSiteVar’ will be initialized after [-Wreorder]

  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:292:11: warning:   ‘GCoptimization::LabelID* GCoptimization::m_labeling’ [-Wreorder]

  LabelID *m_labeling;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:303:18: warning: ‘GCoptimization::m_activeLabelCounts’ will be initialized after [-Wreorder]

  SiteID*         m_activeLabelCounts;
                  ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:296:11: warning:   ‘int GCoptimization::m_stepsThisCycle’ [-Wreorder]

  int      m_stepsThisCycle;
           ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]

 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimization::updateLabelingInfo(bool, bool, bool)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1177:15: warning: unused variable ‘energy’ [-Wunused-variable]

    EnergyType energy = 0;
               ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:121:26:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:769:30:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:111:0,
                 from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_sink_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:584:43:   required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33:   required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]

  if (i->parent = a0_min)
  ^
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_source_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:585:45:   required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33:   required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]

  if (i->parent = a0_min)
  ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunction]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:717:54:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45:   required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36:   required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunctionExtra]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:725:70:   required from here

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_dc’ will be initialized after [-Wreorder]

   DataCostT& m_dc;
              ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_site’ [-Wreorder]

   SiteID m_site;
          ^

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]

   GreedyIter(DataCostT& dc, SiteID numSites)
   ^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimizationGridGraph::computeNeighborWeights(GCoptimization::EnergyTermType*, GCoptimization::EnergyTermType*)’:

/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1514:38: warning: ‘weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]

    m_neighborsWeights[i*4+n] = weight;
                                      ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/graph.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void LinkedBlockList::addFront(ListType)’:

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:18:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]

  m_head ->m_item[m_head_block_size] = item;
                                   ^
/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void* LinkedBlockList::next()’:

/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:26:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]

  ListType toReturn = m_cursor -> m_item[m_cursor_ind];
                                                     ^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/c++ -pthread -shared -L/.../CIP-build/CIPPython-install/lib -Wl,-rpath=/.../CIP-build/CIPPython-install/lib,--no-as-needed build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o -L/.../CIP/Utilities/GraphCutsOptimization -L/.../CIP-build/CIPPython-install/lib -lpython2.7 -o /.../CIP-build/CIP-build/cip_python/utils/pygco.so
[ 10%] Built target CIP_PYTHON
Scanning dependencies of target cipNelderMeadSimplexOptimizerTEST
[ 10%] Building CXX object Common/Testing/CMakeFiles/cipNelderMeadSimplexOptimizerTEST.dir/cipNelderMeadSimplexOptimizerTEST.cxx.o
[ 11%] Linking CXX executable cipNelderMeadSimplexOptimizerTEST
[ 11%] Built target cipNelderMeadSimplexOptimizerTEST
Scanning dependencies of target itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Building CXX object Common/Testing/CMakeFiles/itkCIPExtractChestLabelMapImageFilterTEST.dir/itkCIPExtractChestLabelMapImageFilterTEST.cxx.o
[ 11%] Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Built target itkCIPExtractChestLabelMapImageFilterTEST