darwin.archive bin.v2/libs/context/build/darwin-4.2.1/release/link-static/threading-multi/libboost_context.a
common.copy /.../ChestImagingPlatform-master-build/Boost-install/lib/libboost_context.a
common.mkdir bin.v2/libs/coroutine
common.mkdir bin.v2/libs/coroutine/build
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail
darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/standard_stack_allocator_posix.o

libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:61:15: warning: unused variable 'result' [-Wunused-variable]

    const int result = ::getrlimit( RLIMIT_STACK, & limit);
              ^

libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:135:15: warning: unused variable 'result' [-Wunused-variable]

    const int result( ::mprotect( limit, detail::pagesize(), PROT_NONE) );
              ^
2 warnings generated.
darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/coroutine_context.o
darwin.archive bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../ChestImagingPlatform-master-build/Boost-install/lib/libboost_coroutine.a
common.mkdir /.../ChestImagingPlatform-master-build/Boost-install/include
common.mkdir /.../ChestImagingPlatform-master-build/Boost-install/include/boost
common.copy /.../ChestImagingPlatform-master-build/Boost-install/include/boost/aligned_storage.hpp
common.copy /.../ChestImagingPlatform-master-build/Boost-install/include/boost/any.hpp

-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/X11R6/lib/libX11.dylib
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- Check the value of the 22nd bit of a 32-bit quiet-NaN
-- Check the value of the 22nd bit of a 32-bit quiet-NaN - 1
-- Found ZLIB: /.../ChestImagingPlatform-master-build/zlib-install/lib/libzlib.a (found version "1.2.3") 

CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):

  Policy CMP0033 is not set: The export_library_dependencies command should
  not be called.  Run "cmake --help-policy CMP0033" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.
-- Generating done

-- Detecting CXX compiler ABI info - done
-- Setting build type to 'Debug' as none was specified.
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

Linking CXX static library /.../ChestImagingPlatform-master-build/lib/libCIPUtilities.a
[  2%] Built target CIPUtilities
Scanning dependencies of target CIPCommon
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o

/.../ChestImagingPlatform-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:1:9: warning: '_itCIPkMergeChestLabelMapsImageFilter_txx' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]

#ifndef _itCIPkMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/.../ChestImagingPlatform-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:2:9: note: '_itkCIPMergeChestLabelMapsImageFilter_txx' is defined here; did you mean '_itCIPkMergeChestLabelMapsImageFilter_txx'?

#define _itkCIPMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        _itCIPkMergeChestLabelMapsImageFilter_txx
1 warning generated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o

cythoning /.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.pyx to /.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp
building 'ChestConventions' extension
creating build
creating build/temp.macosx-10.5-x86_64-2.7
creating build/temp.macosx-10.5-x86_64-2.7/Users
creating build/temp.macosx-10.5-x86_64-2.7/Users/acil-user
creating build/temp.macosx-10.5-x86_64-2.7/Users/acil-user/Projects
creating build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master
creating build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master/cip_python
/usr/bin/cc -fno-strict-aliasing -I/Users/acil-user/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/.../ChestImagingPlatform-master/Common/ -I/Users/acil-user/anaconda/include/python2.7 -c /.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp -o build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.o

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4391:28: warning: unused function '__Pyx_PyObject_AsString' [-Wunused-function]

static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
                           ^

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4388:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
                               ^

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:297:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]

static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
                            ^

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4503:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]

static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4528:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]

static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                ^

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4127:32: warning: unused function '__Pyx_PyInt_From_long' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
                               ^

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4153:27: warning: function '__Pyx_PyInt_As_long' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
                          ^

/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4248:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
                         ^
8 warnings generated.
/usr/bin/c++ -bundle -undefined dynamic_lookup -L/Users/acil-user/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.o -L/.../ChestImagingPlatform-master-build/lib -L/Users/acil-user/anaconda/lib -lChestConventions -o /.../ChestImagingPlatform-master/cip_python/ChestConventions.so
[ 10%] Built target CIP_PYTHON
Scanning dependencies of target cipHelperTEST
[ 10%] Building CXX object Common/Testing/CMakeFiles/cipHelperTEST.dir/cipHelperTEST.cxx.o
Linking CXX executable cipHelperTEST
[ 10%] Built target cipHelperTEST
Scanning dependencies of target cipLobeSurfaceModelTEST

Scanning dependencies of target SegmentLungLobesTest
[ 32%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 32%] Built target SegmentLungLobesTest
[ 32%] Generating ReadDicomWriteTagsCLP.h
GenerateCLP --InputXML /.../ChestImagingPlatform-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.xml --OutputCxx /.../ChestImagingPlatform-master-build/CIP-build/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTagsCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "IO" has 4 parameters
Scanning dependencies of target ReadDicomWriteTagsLib
[ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o

/.../ChestImagingPlatform-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]

        if ( commaLocation != std::string::npos )
             ~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~

/.../ChestImagingPlatform-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]

        if ( newlineLocation != std::string::npos )
             ~~~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 33%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../ChestImagingPlatform-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 33%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest

Scanning dependencies of target CropLungTest
[ 49%] Building CXX object CommandLineTools/CropLung/CMakeFiles/CropLungTest.dir/Testing/CropLungTest.cxx.o
Linking CXX executable ../Testing/bin/CropLungTest
[ 49%] Built target CropLungTest
[ 49%] Generating GenerateModelCLP.h
GenerateCLP --InputXML /.../ChestImagingPlatform-master/CommandLineTools/GenerateModel/GenerateModel.xml --OutputCxx /.../ChestImagingPlatform-master-build/CIP-build/CommandLineTools/GenerateModel/GenerateModelCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "" has 6 parameters
Scanning dependencies of target GenerateModelLib
[ 50%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModelLib.dir/GenerateModel.cxx.o

/.../ChestImagingPlatform-master/CommandLineTools/GenerateModel/GenerateModel.cxx:131:24: warning: comparison of constant -1 with expression of type 'unsigned short' is always false [-Wtautological-constant-out-of-range-compare]

  if ( foregroundLabel == -1 )
       ~~~~~~~~~~~~~~~ ^  ~~
1 warning generated.
Linking CXX static library ../../bin/libGenerateModelLib.a
[ 50%] Built target GenerateModelLib
Scanning dependencies of target GenerateModel
[ 50%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModel.dir/.../ChestImagingPlatform-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/GenerateModel
[ 50%] Built target GenerateModel
Scanning dependencies of target GenerateModelTest