[100%] Built target GenerateCLPLauncher
[ 77%] No install step for 'SlicerExecutionModel'
[ 78%] Completed 'SlicerExecutionModel'
[ 84%] Built target SlicerExecutionModel
[ 85%] Performing configure step for 'CIP'
Not searching for unused variables given on the command line.
loading initial cache file /.../CIP-Build/CIP-prefix/tmp/CIP-cache.cmake
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...

CMake Error at CIP.cmake:95 (get_filename_component):

  get_filename_component unknown component DIRECTORY
Call Stack (most recent call first):
  CMakeLists.txt:38 (include)


----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring CIP
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet

-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring incomplete, errors occurred!
[ 87%] Performing forcebuild step for 'CIP'
[ 89%] Performing build step for 'CIP'
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...

CMake Error at CIP.cmake:95 (get_filename_component):

  get_filename_component unknown component DIRECTORY
Call Stack (most recent call first):
  CMakeLists.txt:38 (include)


----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring CIP
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet

-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring incomplete, errors occurred!
[  0%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkSuperquadricTensorGlyphFilter.cxx.o
In file included from /.../CIP/Utilities/VTK/vtkSuperquadricTensorGlyphFilter.cxx:24:0:

/.../CIP/Utilities/VTK/vtkSuperquadricTensorGlyphFilter.h:47:34: fatal error: vtkPolyDataAlgorithm.h: No such file or directory

 #include "vtkPolyDataAlgorithm.h"
                                  ^
compilation terminated.
[  1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkGlyph3DWithScaling.cxx.o
In file included from /.../CIP/Utilities/VTK/vtkGlyph3DWithScaling.cxx:15:0:

/.../CIP/Utilities/VTK/vtkGlyph3DWithScaling.h:76:34: fatal error: vtkPolyDataAlgorithm.h: No such file or directory

 #include "vtkPolyDataAlgorithm.h"
                                  ^
compilation terminated.
[  1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageConnectivity.cxx.o
In file included from /.../CIP/Utilities/VTK/vtkImageConnectivity.cxx:9:0:

/.../CIP/Utilities/VTK/vtkImageConnectivity.h:21:31: fatal error: vtkImageAlgorithm.h: No such file or directory

 #include <vtkImageAlgorithm.h>
                               ^
compilation terminated.
[  1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageErode.cxx.o

/.../CIP/Utilities/VTK/vtkImageErode.cxx:9:28: fatal error: vtkInformation.h: No such file or directory

 #include <vtkInformation.h>
                            ^
compilation terminated.
[  2%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageNeighborhoodFilter.cxx.o
In file included from /.../CIP/Utilities/VTK/vtkImageNeighborhoodFilter.cxx:14:0:

/.../CIP/Utilities/VTK/vtkImageNeighborhoodFilter.h:24:38: fatal error: vtkImageSpatialAlgorithm.h: No such file or directory

 #include "vtkImageSpatialAlgorithm.h"
                                      ^
compilation terminated.
[  2%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkNRRDReader.cxx.o
In file included from /.../CIP/Utilities/VTK/vtkNRRDReader.cxx:29:0:

/.../CIP/Utilities/VTK/vtkNRRDReader.h:37:36: fatal error: vtkMedicalImageReader2.h: No such file or directory

 #include "vtkMedicalImageReader2.h"
                                    ^
compilation terminated.
[  2%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkNRRDWriter.cxx.o
In file included from /.../CIP/Utilities/VTK/vtkNRRDWriter.cxx:3:0:

/.../CIP/Utilities/VTK/vtkNRRDWriter.h:4:23: fatal error: vtkWriter.h: No such file or directory

 #include "vtkWriter.h"
                       ^
compilation terminated.
Linking CXX static library /.../CIP-Build/lib/libCIPUtilities.a

/usr/bin/ar: CMakeFiles/CIPUtilities.dir/VTK/vtkSuperquadricTensorGlyphFilter.cxx.o: No such file or directory

[  3%] Built target CIPUtilities
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
In file included from /.../CIP/Common/cipChestRegionChestTypeLocations.cxx:1:0:

/.../CIP/Common/cipChestRegionChestTypeLocations.h:22:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
In file included from /.../CIP/Common/cipChestDataViewer.cxx:11:0:

/.../CIP/Common/cipChestDataViewer.h:21:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o
In file included from /.../CIP/Common/itkCIPMergeChestLabelMapsImageFilter.h:9:0,
                 from /.../CIP/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:4:

/.../CIP/Common/cipHelper.h:16:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
In file included from /.../CIP/Common/cipParticleConnectedComponentFilter.cxx:9:0:

/.../CIP/Common/cipParticleConnectedComponentFilter.h:41:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselParticleConnectedComponentFilter.cxx.o
In file included from /.../CIP/Common/cipVesselParticleConnectedComponentFilter.h:26:0,
                 from /.../CIP/Common/cipVesselParticleConnectedComponentFilter.cxx:9:

/.../CIP/Common/cipParticleConnectedComponentFilter.h:41:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayParticleConnectedComponentFilter.cxx.o
In file included from /.../CIP/Common/cipAirwayParticleConnectedComponentFilter.h:26:0,
                 from /.../CIP/Common/cipAirwayParticleConnectedComponentFilter.cxx:9:

/.../CIP/Common/cipParticleConnectedComponentFilter.h:41:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureParticleConnectedComponentFilter.cxx.o
In file included from /.../CIP/Common/cipFissureParticleConnectedComponentFilter.h:28:0,
                 from /.../CIP/Common/cipFissureParticleConnectedComponentFilter.cxx:11:

/.../CIP/Common/cipParticleConnectedComponentFilter.h:41:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
In file included from /.../CIP/Common/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.h:10:0,
                 from /.../CIP/Common/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx:8:

/.../CIP/Common/cipThinPlateSplineSurfaceModelToParticlesMetric.h:13:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
In file included from /.../CIP/Common/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.h:11:0,
                 from /.../CIP/Common/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx:8:

/.../CIP/Common/cipThinPlateSplineSurfaceModelToParticlesMetric.h:13:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
In file included from /.../CIP/Common/cipThinPlateSplineSurfaceModelToParticlesMetric.cxx:12:0:

/.../CIP/Common/cipThinPlateSplineSurfaceModelToParticlesMetric.h:13:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipNelderMeadSimplexOptimizer.cxx.o
In file included from /.../CIP/Common/cipNelderMeadSimplexOptimizer.h:24:0,
                 from /.../CIP/Common/cipNelderMeadSimplexOptimizer.cxx:12:

/.../CIP/Common/cipThinPlateSplineSurfaceModelToParticlesMetric.h:13:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipHelper.cxx.o
In file included from /.../CIP/Common/cipHelper.cxx:11:0:

/.../CIP/Common/cipHelper.h:16:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
[  7%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkSimpleLungMask.cxx.o
In file included from /.../CIP/Common/vtkSimpleLungMask.cxx:15:0:

/.../CIP/Common/vtkSimpleLungMask.h:17:31: fatal error: vtkImageAlgorithm.h: No such file or directory

 #include <vtkImageAlgorithm.h>
                               ^
compilation terminated.
[  7%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkImageStatistics.cxx.o
In file included from /.../CIP/Common/vtkImageStatistics.cxx:14:0:

/.../CIP/Common/vtkImageStatistics.h:26:31: fatal error: vtkImageAlgorithm.h: No such file or directory

 #include "vtkImageAlgorithm.h"
                               ^
compilation terminated.
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkCIPAirwayParticlesToGenerationLabeledAirwayParticlesFilter.cxx.o
In file included from /.../CIP/Common/vtkCIPAirwayParticlesToGenerationLabeledAirwayParticlesFilter.cxx:9:0:

/.../CIP/Common/vtkCIPAirwayParticlesToGenerationLabeledAirwayParticlesFilter.h:15:30: fatal error: vtkPoints.h: No such file or directory

 #include "vtkPoints.h" //DEB 
                              ^
compilation terminated.
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx.o
In file included from /.../CIP/Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx:9:0:

/.../CIP/Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.h:103:30: fatal error: vtkPoints.h: No such file or directory

 #include "vtkPoints.h" //DEB 
                              ^
compilation terminated.
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayDataInteractor.cxx.o
In file included from /.../CIP/Common/cipAirwayDataInteractor.cxx:11:0:

/.../CIP/Common/cipAirwayDataInteractor.h:19:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselDataInteractor.cxx.o
In file included from /.../CIP/Common/cipVesselDataInteractor.cxx:11:0:

/.../CIP/Common/cipVesselDataInteractor.h:19:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureDataInteractor.cxx.o
In file included from /.../CIP/Common/cipFissureDataInteractor.cxx:11:0:

/.../CIP/Common/cipFissureDataInteractor.h:19:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
Linking CXX static library /.../CIP-Build/lib/libCIPCommon.a

/usr/bin/ar: CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o: No such file or directory

[ 11%] Built target CIPCommon
[ 11%] Built target ChestConventions
[ 12%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipChestRegionChestTypeLocationsIO.cxx.o
In file included from /.../CIP/IO/cipChestRegionChestTypeLocationsIO.h:19:0,
                 from /.../CIP/IO/cipChestRegionChestTypeLocationsIO.cxx:1:

/.../CIP/Common/cipChestRegionChestTypeLocations.h:22:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.
Linking CXX static library /.../CIP-Build/lib/libCIPIO.a

/usr/bin/ar: CMakeFiles/CIPIO.dir/cipChestRegionChestTypeLocationsIO.cxx.o: No such file or directory

[ 12%] Built target CIPIO
running build_ext
skipping '/.../CIP/cip_python/wrap_ChestConventions.cpp' Cython extension (up-to-date)
[ 12%] Built target CIP_PYTHON
[ 12%] Building CXX object Common/Testing/CMakeFiles/cipHelperTEST.dir/cipHelperTEST.cxx.o
In file included from /.../CIP/Common/Testing/cipHelperTEST.cxx:2:0:

/.../CIP/Common/cipHelper.h:16:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPCommon.a', needed by `Common/Testing/cipHelperTEST'.  Stop.

[ 12%] Built target cipHelperTEST

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPCommon.a', needed by `Common/Testing/cipLobeSurfaceModelTEST'.  Stop.

[ 13%] Built target cipLobeSurfaceModelTEST
[ 13%] Building CXX object Common/Testing/CMakeFiles/cipNelderMeadSimplexOptimizerTEST.dir/cipNelderMeadSimplexOptimizerTEST.cxx.o
In file included from /.../CIP/Common/cipNelderMeadSimplexOptimizer.h:24:0,
                 from /.../CIP/Common/Testing/cipNelderMeadSimplexOptimizerTEST.cxx:1:

/.../CIP/Common/cipThinPlateSplineSurfaceModelToParticlesMetric.h:13:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPCommon.a', needed by `Common/Testing/cipNelderMeadSimplexOptimizerTEST'.  Stop.

[ 13%] Built target cipNelderMeadSimplexOptimizerTEST
[ 13%] Building CXX object Common/Testing/CMakeFiles/itkCIPExtractChestLabelMapImageFilterTEST.dir/itkCIPExtractChestLabelMapImageFilterTEST.cxx.o
In file included from /.../CIP/Common/Testing/itkCIPExtractChestLabelMapImageFilterTEST.cxx:2:0:

/.../CIP/Common/cipHelper.h:16:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPExtractChestLabelMapImageFilterTEST'.  Stop.

[ 13%] Built target itkCIPExtractChestLabelMapImageFilterTEST
[ 14%] Building CXX object Common/Testing/CMakeFiles/itkCIPMergeChestLabelMapsImageFilterTEST.dir/itkCIPMergeChestLabelMapsImageFilterTEST.cxx.o
In file included from /.../CIP/Common/Testing/itkCIPMergeChestLabelMapsImageFilterTEST.cxx:2:0:

/.../CIP/Common/cipHelper.h:16:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPMergeChestLabelMapsImageFilterTEST'.  Stop.

[ 14%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
[ 15%] Building CXX object IO/Testing/CMakeFiles/cipChestRegionChestTypeLocationsIOTEST.dir/cipChestRegionChestTypeLocationsIOTEST.cxx.o
In file included from /.../CIP/IO/cipChestRegionChestTypeLocationsIO.h:19:0,
                 from /.../CIP/IO/Testing/cipChestRegionChestTypeLocationsIOTEST.cxx:1:

/.../CIP/Common/cipChestRegionChestTypeLocations.h:22:25: fatal error: vtkPolyData.h: No such file or directory

 #include "vtkPolyData.h"
                         ^
compilation terminated.

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPIO.a', needed by `IO/Testing/cipChestRegionChestTypeLocationsIOTEST'.  Stop.

[ 15%] Built target cipChestRegionChestTypeLocationsIOTEST

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPIO.a', needed by `IO/Testing/cipLobeSurfaceModelIOTEST'.  Stop.

[ 15%] Built target cipLobeSurfaceModelIOTEST
[ 16%] Built target ConvertDicomLib

gmake[5]: *** No rule to make target `/.../CIP-Build/lib/libCIPIO.a', needed by `bin/ConvertDicom'.  Stop.

[ 16%] Built target ConvertDicom

gmake[5]: *** No rule to make target `/.../CIP/CommandLineTools/ConvertDicom/Testing/ConvertDicomTest.cxx', needed by `CommandLineTools/ConvertDicom/CMakeFiles/ConvertDicomTest.dir/Testing/ConvertDicomTest.cxx.o'.  Stop.

[ 16%] Built target ConvertDicomTest
[ 17%] Building CXX object CommandLineTools/MergeParticleDataSets/CMakeFiles/MergeParticleDataSetsLib.dir/MergeParticleDataSets.cxx.o

/.../CIP/CommandLineTools/MergeParticleDataSets/MergeParticleDataSets.cxx:40:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
Linking CXX static library ../../bin/libMergeParticleDataSetsLib.a

/usr/bin/ar: CMakeFiles/MergeParticleDataSetsLib.dir/MergeParticleDataSets.cxx.o: No such file or directory

[ 17%] Built target MergeParticleDataSetsLib

gmake[5]: *** No rule to make target `bin/libMergeParticleDataSetsLib.a', needed by `bin/MergeParticleDataSets'.  Stop.

[ 17%] Built target MergeParticleDataSets
[ 17%] Building CXX object CommandLineTools/MergeParticleDataSets/CMakeFiles/MergeParticleDataSetsTest.dir/Testing/MergeParticleDataSetsTest.cxx.o
In file included from /.../CIP/CommandLineTools/Testing/itkTestMain.h:54:0,
                 from /.../CIP/CommandLineTools/MergeParticleDataSets/Testing/MergeParticleDataSetsTest.cxx:1:

/.../CIP/Common/cipHelper.h:16:29: fatal error: vtkSmartPointer.h: No such file or directory

 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
gmake[5]: *** No rule to make target `bin/libMergeParticleDataSetsLib.a', needed by `CommandLineTools/Testing/bin/MergeParticleDataSetsTest'.  Stop.
[ 17%] Built target MergeParticleDataSetsTest
[ 17%] Building CXX object CommandLineTools/RemoveParticlesFromParticlesDataSet/CMakeFiles/RemoveParticlesFromParticlesDataSetLib.dir/RemoveParticlesFromParticlesDataSet.cxx.o
/.../CIP/CommandLineTools/RemoveParticlesFromParticlesDataSet/RemoveParticlesFromParticlesDataSet.cxx:22:29: fatal error: vtkSmartPointer.h: No such file or directory
 #include "vtkSmartPointer.h"
                             ^
compilation terminated.
The maximum number of reported warnings or errors has been reached!!!