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1.82s

Could not import jpeg_ls
Could not import gdcm
E
======================================================================
ERROR: test_vasculature_phenotypes.test_execute
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/centos/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_vasculature_phenotypes.py", line 28, in test_execute
    out=v_pheno.execute(vessel,cid='None')
  File "/home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py", line 231, in execute
    self._dx = self.interparticle_distance(vessel)
  File "/home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py", line 385, in interparticle_distance
    if self.old_interparticle_distance:
AttributeError: VasculaturePhenotypes instance has no attribute 'old_interparticle_distance'
-------------------- >> begin captured stdout << ---------------------
Number of Vessel Points 479
Using spacing in particle file: (1.000000,1.000000,1.000000)

--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
matplotlib: DEBUG: $HOME=/home/centos
matplotlib: DEBUG: matplotlib data path /home/centos/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/matplotlib/mpl-data
matplotlib: DEBUG: loaded rc file /home/centos/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc
matplotlib: DEBUG: matplotlib version 2.2.3
matplotlib: DEBUG: interactive is False
matplotlib: DEBUG: platform is linux2
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'pandas.core.tools.pandas', 'numpy.lib.function_base', 'logging.warnings', 'nose.plugins.textwrap', 'mimetools', 'nose.exc', 'multiprocessing.signal', 'dateutil.datetime', 'xml.sax', 'nose.inspect', 'logging.codecs', '_random', 'encodings', 'numpy.polynomial._polybase', 'numpy.polynomial.hermite', 'contextlib', 'pandas._libs.datetime', 'numpy.polynomial.polynomial', 'pandas.io.os', 'matplotlib.cbook._backports', 'email.Generator', 'pandas.core.internals.collections', 'pandas.core.sorting', '_io', 'pandas.core.groupby.datetime', 'importlib.sys', 'grp', 'linecache', 'pandas.core.internals.re', 'numpy.core.defchararray', 'gettext', 'nose.tools.nose', 'pandas.core.arrays.warnings', 'six.moves.urllib.request', 'email.warnings', 'pandas', 'xml.sax._exceptions', 'pandas.core.config', 'genericpath', 'stat', 'nose.plugins.Queue', 'pandas.core.internals.copy', 'symbol', 'urllib2', 'unittest.signals', 'email.Encoders', 'backports.functools_lru_cache', 'ctypes.ctypes', 'nose.plugins.multiprocess', 'numpy.lib.format', 'hotshot.pstats', 'subprocess32', 'pandas.core.ops', 'numpy.testing._private.decorators', 'pandas._libs.sys', 'pandas._libs.tslibs.numpy', 'nose.plugins.allmodules', 'json.re', 'pkg_resources._vendor.types', 'nose.tools.time', 'time', 'pandas._libs.fractions', 'nose.plugins.warnings', 'future_builtins']
matplotlib: DEBUG: CACHEDIR=/home/centos/.cache/matplotlib
matplotlib.font_manager: DEBUG: Using fontManager instance from /home/centos/.cache/matplotlib/fontList.json
matplotlib.backends: DEBUG: backend Qt5Agg version 5.6
pydicom: DEBUG: Could not import jpeg_ls
pydicom: DEBUG: Could not import gdcm
--------------------- >> end captured logging << ---------------------

----------------------------------------------------------------------
Ran 1 test in 0.092s

FAILED (errors=1)

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