Execution Time1.76s

Test: test_fissure_completeness_phenotypes (Failed)
Build: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (ip-172-31-44-204.ec2.internal) on 2021-09-28 00:04:21
Repository revision: 7ecf5bd03f0537ecf5fe6da4a16a1523ef1e2aa8

Exit Value1

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Test output
Could not import jpeg_ls
Could not import gdcm
F
======================================================================
FAIL: test_fissure_phenotypes.test_main
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_fissure_phenotypes.py", line 41, in test_main
    "Completeness measure should equal 0.5"
AssertionError: Completeness measure should equal 0.5
-------------------- >> begin captured logging << --------------------
matplotlib: DEBUG: $HOME=/home/ec2-user
matplotlib: DEBUG: matplotlib data path /home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/matplotlib/mpl-data
matplotlib: DEBUG: loaded rc file /home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc
matplotlib: DEBUG: matplotlib version 2.2.3
matplotlib: DEBUG: interactive is False
matplotlib: DEBUG: platform is linux2
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matplotlib: DEBUG: CACHEDIR=/home/ec2-user/.cache/matplotlib
matplotlib.font_manager: DEBUG: Using fontManager instance from /home/ec2-user/.cache/matplotlib/fontList.json
matplotlib.backends: DEBUG: backend Qt5Agg version 5.9.2
pydicom: DEBUG: Could not import jpeg_ls
pydicom: DEBUG: Could not import gdcm
--------------------- >> end captured logging << ---------------------

----------------------------------------------------------------------
Ran 1 test in 0.049s

FAILED (failures=1)