Execution Time2.35s

Test: test_particle_metrics (Failed)
Build: CIP-Darwin-17.7.0-x86_64-incr-SL-ON-SL-OFF (bwh002376.bwh.harvard.edu) on 2018-10-22 23:47:42

Exit Value1
Processors1

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Test output
_RegisterApplication(), FAILED TO establish the default connection to the WindowServer, _CGSDefaultConnection() is NULL.
E
======================================================================
ERROR: Failure: ImportError (No module named nrrd)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/acil-user/anaconda2/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
    addr.filename, addr.module)
  File "/Users/acil-user/anaconda2/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/Users/acil-user/anaconda2/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py", line 3, in <module>
    from cip_python.particles.particle_metrics import ParticleMetrics
  File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py", line 1, in <module>
    from chest_particles import *
  File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py", line 10, in <module>
    from ..utils import ReadNRRDsWriteVTK
  File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py", line 2, in <module>
    from apply_label_from_classification import *
  File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py", line 4, in <module>
    import nrrd
ImportError: No module named nrrd
-------------------- >> begin captured logging << --------------------
matplotlib: DEBUG: $HOME=/Users/acil-user
matplotlib: DEBUG: matplotlib data path /Users/acil-user/anaconda2/lib/python2.7/site-packages/matplotlib/mpl-data
matplotlib: DEBUG: loaded rc file /Users/acil-user/anaconda2/lib/python2.7/site-packages/matplotlib/mpl-data/matplotlibrc
matplotlib: DEBUG: matplotlib version 2.2.3
matplotlib: DEBUG: interactive is False
matplotlib: DEBUG: platform is darwin
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'pathlib2.collections', 'cip_python.common.platform', 'multiprocessing.threading', 'pkg_resources._vendor.packaging.requirements', '_socket', 'future.types.sys', 'email.Utils', 'cip_python.common.chest_conventions', 'pydicom.io', 'xml.sax.handler', 'pathlib2.posixpath', 'cip_python.common.SimpleITK', '_warnings', 'vtk.vtkFiltersImaging', 'encodings.__builtin__', 'test_particle_metrics', 'nose.plugins.cPickle', 'tokenize', 'email.os', 'future.builtins.misc', 'numpy._distributor_init', 'nose.plugins.itertools', 'pwd', 'nose.plugins.nose', 'pathlib2', '_sysconfigdata', '_struct', 'future.types.copy', 'nose.textwrap', 'uu', 'ctypes.macholib.sys', 'numpy.fft', 'numpy.random.numpy', 'logging.time', 'matplotlib.compat.subprocess', 'numpy.polynomial.chebyshev', 'numpy.lib.function_base', 'vtk.vtkFiltersProgrammablePython', 'vtk.vtkDomainsChemistryOpenGL2Python', 'logging.warnings', 'nose.plugins.textwrap', 'mimetools', 'nose.exc', 'multiprocessing.signal', 'pydicom.datadict', 'vtk.vtkFiltersSMPPython', 'vtk.vtkFiltersParallelImaging', 'xml.sax', 'nose.inspect', 'logging.codecs', '_random', 'encodings', 'numpy.polynomial._polybase', 'matplotlib.testing', 'vtk.vtkFiltersTexture', 'contextlib', 'vtk.vtkImagingStatistics', 'pydicom.pixel_data_handlers.PIL', 'vtk.vtkIOXMLParser', 'numpy.core.info', 'email.Generator', '_io', 'vtk.vtkImagingCorePython', 'importlib.sys', 'grp', 'linecache', 'numpy.core.defchararray', 'gettext', 'nose.tools.nose', 'email.warnings', 'vtk.vtkIOExportOpenGL2', 'vtk.vtkIOSQL', 'xml.sax._exceptions', 'genericpath', 'stat', 'nose.plugins.Queue', 'vtk.vtkRenderingLODPython', 'symbol', 'urllib2', 'pydicom._version', 'unittest.signals', 'email.Encoders', 'vtk.vtkCommonSystemPython', 'backports.functools_lru_cache', 'ctypes.ctypes', 'nose.plugins.multiprocess', 'numpy.lib.format', 'hotshot.pstats', 'future.utils.functools', 'numpy.testing._private.decorators', 'vtk.vtkFiltersParallelImagingPython', 'vtk.vtkIOParallelPython', 'pydicom.bisect', 'nose.plugins.allmodules', 'pkg_resources._vendor.types', 'vtk.vtkIOExportPython', 'nose.tools.time', 'vtk.vtkCommonExecutionModelPython', 'time', 'scandir', 'nose.plugins.warnings', 'future_builtins']
matplotlib: DEBUG: CACHEDIR=/Users/acil-user/.matplotlib
matplotlib.font_manager: DEBUG: Using fontManager instance from /Users/acil-user/.matplotlib/fontList.json
matplotlib.backends: DEBUG: backend MacOSX version unknown
--------------------- >> end captured logging << ---------------------

----------------------------------------------------------------------
Ran 1 test in 0.001s

FAILED (errors=1)