Execution Time6.73s

Test: test_vessel_particles_mask_workflow (Failed)
Build: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (ip-172-31-44-204.ec2.internal) on 2017-09-09 00:07:33
Repository revision: b6c6258aa54131f397cff54180e7123aeda7152c

Exit Value1

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Test output
E
======================================================================
ERROR: test_vessel_particles_mask_workflow.test_vessel_particles_mask_workflow
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py", line 19, in test_vessel_particles_mask_workflow
    wf.run()
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/workflows.py", line 590, in run
    runner.run(execgraph, updatehash=updatehash, config=self.config)
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 61, in run
    report_nodes_not_run(notrun)
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/base.py", line 101, in report_nodes_not_run
    raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details
-------------------- >> begin captured logging << --------------------
workflow: INFO: Workflow VesselParticlesMaskWorkflow settings: ['check', 'execution', 'logging']
workflow: INFO: Running serially.
workflow: INFO: Executing node compute_feature_strength in dir: /tmp/tmpz4qfmi/VesselParticlesMaskWorkflow/compute_feature_strength
workflow: INFO: Running:  ComputeFeatureStrength  --C 245.000000 --alpha 0.630000 --alphase 0.250000 --beta 0.510000 --betase 0.100000 --feature RidgeLine --inFileName /home/ec2-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel.nrrd --kappa 0.500000 --method Frangi --nu 0.000000 --outFileName /tmp/tmpdPVCOG/vessel_strength.nhdr --ssm 1.000000 --std 0.7,4.0,7.0 --threads 0
interface: INFO: stdout 2017-09-09T00:11:52.938840:   ComputeFeatureStrength  [--returnparameterfile <std::string>]
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           [--processinformationaddress <std::string>]
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           [--xml] [--echo] [--betase <double>] [--kappa
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           <double>] [--nu <double>] [--alphase <double>]
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           [--C <double>] [--beta <double>] [--alpha
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           <double>] [-f <RidgeLine|ValleyLine|RidgeSurface
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           |ValleySurface>] [-m <Frangi|StrainEnergy
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           |ModifiedKrissian|Descoteaux|FrangiXiao
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           |DescoteauxXiao>] [--threads <int>]
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           [--rescaleOff] [--ssm <0|1>] [--std
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           <std::vector<double>>] [--outScaleFileName
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           <std::string>] [-o <std::string>] [-i
interface: INFO: stdout 2017-09-09T00:11:52.938840:                           <std::string>] [--] [--version] [-h]
interface: INFO: stderr 2017-09-09T00:11:52.939807:PARSE ERROR: Argument: (--ssm)
interface: INFO: stderr 2017-09-09T00:11:52.939807:             Couldn't read argument value from string '1.000000'
interface: INFO: stderr 2017-09-09T00:11:52.939807:
interface: INFO: stderr 2017-09-09T00:11:52.939807:Brief USAGE: 
interface: INFO: stderr 2017-09-09T00:11:52.939807:
interface: INFO: stderr 2017-09-09T00:11:52.939807:For complete USAGE and HELP type: 
interface: INFO: stderr 2017-09-09T00:11:52.939807:   ComputeFeatureStrength --help
interface: INFO: stderr 2017-09-09T00:11:52.939807:
workflow: ERROR: [u'Node compute_feature_strength failed to run on host ip-172-31-44-204.ec2.internal.']
workflow: INFO: Saving crash info to /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20170909-001153-ec2-user-compute_feature_strength-a445dd4a-ac7d-4a40-846d-e17ccc61d41a.pklz
workflow: INFO: Traceback (most recent call last):
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 43, in run
    node.run(updatehash=updatehash)
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 372, in run
    self._run_interface()
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 482, in _run_interface
    self._result = self._run_command(execute)
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 613, in _run_command
    result = self._interface.run()
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1081, in run
    runtime = self._run_wrapper(runtime)
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1724, in _run_wrapper
    runtime = self._run_interface(runtime)
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1758, in _run_interface
    self.raise_exception(runtime)
  File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1682, in raise_exception
    **runtime.dictcopy()))
RuntimeError: Command:
 ComputeFeatureStrength  --C 245.000000 --alpha 0.630000 --alphase 0.250000 --beta 0.510000 --betase 0.100000 --feature RidgeLine --inFileName /home/ec2-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel.nrrd --kappa 0.500000 --method Frangi --nu 0.000000 --outFileName /tmp/tmpdPVCOG/vessel_strength.nhdr --ssm 1.000000 --std 0.7,4.0,7.0 --threads 0
Standard output:
   ComputeFeatureStrength  [--returnparameterfile <std::string>]
                           [--processinformationaddress <std::string>]
                           [--xml] [--echo] [--betase <double>] [--kappa
                           <double>] [--nu <double>] [--alphase <double>]
                           [--C <double>] [--beta <double>] [--alpha
                           <double>] [-f <RidgeLine|ValleyLine|RidgeSurface
                           |ValleySurface>] [-m <Frangi|StrainEnergy
                           |ModifiedKrissian|Descoteaux|FrangiXiao
                           |DescoteauxXiao>] [--threads <int>]
                           [--rescaleOff] [--ssm <0|1>] [--std
                           <std::vector<double>>] [--outScaleFileName
                           <std::string>] [-o <std::string>] [-i
                           <std::string>] [--] [--version] [-h]
Standard error:
PARSE ERROR: Argument: (--ssm)
             Couldn't read argument value from string '1.000000'

Brief USAGE: 

For complete USAGE and HELP type: 
   ComputeFeatureStrength --help

Return code: 1
Interface ComputeFeatureStrength failed to run. 

workflow: INFO: Executing node compute_distance_transform in dir: /tmp/tmptP4IjQ/VesselParticlesMaskWorkflow/compute_distance_transform
workflow: INFO: Running:  ComputeDistanceMap  --distanceMap /tmp/tmpdPVCOG/vessel_distanceMap.nhdr --labelMap /home/ec2-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel_volumeMask.nrrd
interface: INFO: stdout 2017-09-09T00:11:54.033880:Reading label map...
interface: INFO: stdout 2017-09-09T00:11:54.033880:Skipping downsampling...
interface: INFO: stdout 2017-09-09T00:11:54.033880:Computing distance map...
interface: INFO: stdout 2017-09-09T00:11:54.033880:Writing to file...
interface: INFO: stdout 2017-09-09T00:11:54.033880:DONE.
workflow: INFO: Executing node unu_2op_lt in dir: /tmp/tmpNaUPsY/VesselParticlesMaskWorkflow/unu_2op_lt
workflow: INFO: Running: unu 2op  lt /tmp/tmpdPVCOG/vessel_distanceMap.nhdr -2.000000 --output /tmp/tmpdPVCOG/vessel_featureMask.nhdr --type short
workflow: INFO: ***********************************
workflow: ERROR: could not run node: VesselParticlesMaskWorkflow.compute_feature_strength
workflow: INFO: crashfile: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20170909-001153-ec2-user-compute_feature_strength-a445dd4a-ac7d-4a40-846d-e17ccc61d41a.pklz
workflow: INFO: ***********************************
--------------------- >> end captured logging << ---------------------

----------------------------------------------------------------------
Ran 1 test in 3.416s

FAILED (errors=1)