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ERROR: test_vessel_particles_mask_workflow.test_vessel_particles_mask_workflow
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py", line 19, in test_vessel_particles_mask_workflow
wf.run()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/workflows.py", line 597, in run
runner.run(execgraph, updatehash=updatehash, config=self.config)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 57, in run
report_nodes_not_run(notrun)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/base.py", line 95, in report_nodes_not_run
raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details
-------------------- >> begin captured logging << --------------------
workflow: INFO: ['check', 'execution', 'logging']
workflow: INFO: Running serially.
workflow: INFO: Executing node compute_distance_transform in dir: /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpVbFEAi/VesselParticlesMaskWorkflow/compute_distance_transform
workflow: INFO: Running: ComputeDistanceMap --distanceMap /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpW3vLVd/vessel_distanceMap.nhdr --labelMap /Users/acil-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel_volumeMask.nrrd
interface: INFO: stderr 2017-04-16T23:04:33.227664:dyld: Library not loaded: /Users/acil-user/Projects/CIP-build/ITKv4-build/lib/libITKOptimizersv4-4.11.1.dylib
interface: INFO: stderr 2017-04-16T23:04:33.227664: Referenced from: /Users/acil-user/Projects/CIP-build/CIP-build/bin/ComputeDistanceMap
interface: INFO: stderr 2017-04-16T23:04:33.227664: Reason: image not found
workflow: ERROR: ['Node compute_distance_transform failed to run on host bwh002376.bwh.harvard.edu.']
workflow: INFO: Saving crash info to /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20170416-230434-acil-user-compute_distance_transform-b5846cda-44a4-4ee7-a806-340e46328e86.pklz
workflow: INFO: Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 39, in run
node.run(updatehash=updatehash)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 394, in run
self._run_interface()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 504, in _run_interface
self._result = self._run_command(execute)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 630, in _run_command
result = self._interface.run()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1043, in run
runtime = self._run_wrapper(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1660, in _run_wrapper
runtime = self._run_interface(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1694, in _run_interface
self.raise_exception(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1618, in raise_exception
raise RuntimeError(message)
RuntimeError: Command:
ComputeDistanceMap --distanceMap /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpW3vLVd/vessel_distanceMap.nhdr --labelMap /Users/acil-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel_volumeMask.nrrd
Standard output:
Standard error:
dyld: Library not loaded: /Users/acil-user/Projects/CIP-build/ITKv4-build/lib/libITKOptimizersv4-4.11.1.dylib
Referenced from: /Users/acil-user/Projects/CIP-build/CIP-build/bin/ComputeDistanceMap
Reason: image not found
Return code: -5
Interface ComputeDistanceMap failed to run.
workflow: INFO: Executing node compute_feature_strength in dir: /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpTvetr4/VesselParticlesMaskWorkflow/compute_feature_strength
workflow: INFO: Running: ComputeFeatureStrength --C 245.000000 --alpha 0.630000 --alphase 0.250000 --beta 0.510000 --betase 0.100000 --feature RidgeLine --inFileName /Users/acil-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel.nrrd --kappa 0.500000 --method Frangi --nu 0.000000 --outFileName /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpW3vLVd/vessel_strength.nhdr --ssm 1.000000 --std 0.7,4.0,7.0 --threads 0
interface: INFO: stderr 2017-04-16T23:04:34.268164:dyld: Library not loaded: /Users/acil-user/Projects/CIP-build/ITKv4-build/lib/libITKOptimizersv4-4.11.1.dylib
interface: INFO: stderr 2017-04-16T23:04:34.268164: Referenced from: /Users/acil-user/Projects/CIP-build/CIP-build/bin/ComputeFeatureStrength
interface: INFO: stderr 2017-04-16T23:04:34.268164: Reason: image not found
workflow: ERROR: ['Node compute_feature_strength failed to run on host bwh002376.bwh.harvard.edu.']
workflow: INFO: Saving crash info to /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20170416-230435-acil-user-compute_feature_strength-483fd858-f748-4cdf-972f-7b50e621e084.pklz
workflow: INFO: Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 39, in run
node.run(updatehash=updatehash)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 394, in run
self._run_interface()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 504, in _run_interface
self._result = self._run_command(execute)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 630, in _run_command
result = self._interface.run()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1043, in run
runtime = self._run_wrapper(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1660, in _run_wrapper
runtime = self._run_interface(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1694, in _run_interface
self.raise_exception(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1618, in raise_exception
raise RuntimeError(message)
RuntimeError: Command:
ComputeFeatureStrength --C 245.000000 --alpha 0.630000 --alphase 0.250000 --beta 0.510000 --betase 0.100000 --feature RidgeLine --inFileName /Users/acil-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel.nrrd --kappa 0.500000 --method Frangi --nu 0.000000 --outFileName /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpW3vLVd/vessel_strength.nhdr --ssm 1.000000 --std 0.7,4.0,7.0 --threads 0
Standard output:
Standard error:
dyld: Library not loaded: /Users/acil-user/Projects/CIP-build/ITKv4-build/lib/libITKOptimizersv4-4.11.1.dylib
Referenced from: /Users/acil-user/Projects/CIP-build/CIP-build/bin/ComputeFeatureStrength
Reason: image not found
Return code: -5
Interface ComputeFeatureStrength failed to run.
workflow: INFO: ***********************************
workflow: ERROR: could not run node: VesselParticlesMaskWorkflow.compute_distance_transform
workflow: INFO: crashfile: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20170416-230434-acil-user-compute_distance_transform-b5846cda-44a4-4ee7-a806-340e46328e86.pklz
workflow: ERROR: could not run node: VesselParticlesMaskWorkflow.compute_feature_strength
workflow: INFO: crashfile: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20170416-230435-acil-user-compute_feature_strength-483fd858-f748-4cdf-972f-7b50e621e084.pklz
workflow: INFO: ***********************************
--------------------- >> end captured logging << ---------------------
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Ran 1 test in 2.124s
FAILED (errors=1)
