59.76s
Test: test_vessel_particles
(Failed)
Build: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON
(ip-172-31-44-204.ec2.internal)
on 2017-02-21 00:02:33
Repository revision: 9cdebdb4e03193f2ee4f71137f3e1130a9354fd3
Show Command Line/home/ec2-user/Projects/CIP-build/CIPPython-install/bin/nosetests "/home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py"
Display graphs:
Test outputgageStackBlurGet: no file "/tmp/tmp7lY8LJ/V-000-010.nrrd"; will recompute blurrings
gageStackBlur: (FFT-based blurring not applicable: need spatial blur=no, boundary=bleed, kernel=discretegauss:1,5)
_stackBlurSpatial: . . . blurring 0 / 10 (scale 0) . . .
_stackBlurSpatial: scale 0 == time 0 (tau 0);
timeLeft 0 = 0 - 0
pass 0 (timeLeft=0 => time=0, sigma=0) ...
done.
_stackBlurSpatial: . . . blurring 1 / 10 (scale 0.279195) . . .
_stackBlurSpatial: scale 0.279195 == time 0.07795 (tau 0.0222845);
timeLeft 0.07795 = 0.07795 - 0
pass 0 (timeLeft=0.07795 => time=0.07795, sigma=0.279195) ...
done.
_stackBlurSpatial: . . . blurring 2 / 10 (scale 0.568784) . . .
_stackBlurSpatial: scale 0.568784 == time 0.323515 (tau 0.103074);
timeLeft 0.245565 = 0.323515 - 0.07795
pass 0 (timeLeft=0.245565 => time=0.245565, sigma=0.495546) ...
done.
_stackBlurSpatial: . . . blurring 3 / 10 (scale 0.885916) . . .
_stackBlurSpatial: scale 0.885916 == time 0.784848 (tau 0.293208);
timeLeft 0.461333 = 0.784848 - 0.323515
pass 0 (timeLeft=0.461333 => time=0.461333, sigma=0.679215) ...
done.
_stackBlurSpatial: . . . blurring 4 / 10 (scale 1.26313) . . .
_stackBlurSpatial: scale 1.26313 == time 1.59551 (tau 0.649332);
timeLeft 0.810657 = 1.59551 - 0.784848
pass 0 (timeLeft=0.810657 => time=0.810657, sigma=0.900365) ...
done.
_stackBlurSpatial: . . . blurring 5 / 10 (scale 1.72014) . . .
_stackBlurSpatial: scale 1.72014 == time 2.95889 (tau 1.02565);
timeLeft 1.36339 = 2.95889 - 1.59551
pass 0 (timeLeft=1.36339 => time=1.36339, sigma=1.16764) ...
done.
_stackBlurSpatial: . . . blurring 6 / 10 (scale 2.38512) . . .
_stackBlurSpatial: scale 2.38512 == time 5.6888 (tau 1.38159);
timeLeft 2.72991 = 5.6888 - 2.95889
pass 0 (timeLeft=2.72991 => time=2.72991, sigma=1.65224) ...
done.
_stackBlurSpatial: . . . blurring 7 / 10 (scale 3.39289) . . .
_stackBlurSpatial: scale 3.39289 == time 11.5117 (tau 1.74687);
timeLeft 5.82289 = 11.5117 - 5.6888
pass 0 (timeLeft=5.82289 => time=5.82289, sigma=2.41307) ...
done.
_stackBlurSpatial: . . . blurring 8 / 10 (scale 4.62553) . . .
_stackBlurSpatial: scale 4.62553 == time 21.3955 (tau 2.06214);
timeLeft 9.88384 = 21.3955 - 11.5117
pass 0 (timeLeft=9.88384 => time=9.88384, sigma=3.14386) ...
done.
_stackBlurSpatial: . . . blurring 9 / 10 (scale 6) . . .
_stackBlurSpatial: scale 6 == time 36 (tau 2.32478);
timeLeft 14.6045 = 36 - 21.3955
pass 0 (timeLeft=14.6045 => time=14.6045, sigma=3.82158) ...
done.
gageStackBlurGet: will reuse 10 /tmp/tmp7lY8LJ/V-%03u-010.nrrd pre-blurrings.
gageStackBlurGet: will reuse 10 /tmp/tmp7lY8LJ/V-%03u-010.nrrd pre-blurrings.
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
Reading file for NA...
Reading file for hevec1...
Reading file for hevec0...
Reading file for val...
Reading file for hevec2...
Reading file for h0...
Reading file for h1...
Reading file for h2...
Reading file for hess...
Reading file for hmode...
*** Error in `ReadNRRDsWriteVTK': munmap_chunk(): invalid pointer: 0x00007fff3c0bc7f0 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x7bfc7)[0x7f0a84160fc7]
ReadNRRDsWriteVTK(_ZN3cip16ChestConventionsD1Ev+0x3e)[0x4da03e]
ReadNRRDsWriteVTK(_ZN3cip40AssertChestRegionChestTypeArrayExistenceE15vtkSmartPointerI11vtkPolyDataE+0x1bd)[0x46c0cd]
ReadNRRDsWriteVTK(ModuleEntryPoint+0x53f7)[0x450f47]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f0a84106af5]
ReadNRRDsWriteVTK[0x449b09]
======= Memory map: ========
00400000-00513000 r-xp 00000000 ca:01 31039806 /home/ec2-user/Projects/CIP-build/CIP-build/bin/ReadNRRDsWriteVTK
00713000-00720000 r--p 00113000 ca:01 31039806 /home/ec2-user/Projects/CIP-build/CIP-build/bin/ReadNRRDsWriteVTK
00720000-00723000 rw-p 00120000 ca:01 31039806 /home/ec2-user/Projects/CIP-build/CIP-build/bin/ReadNRRDsWriteVTK
01805000-01d4a000 rw-p 00000000 00:00 0 [heap]
7f0a8119d000-7f0a811c1000 r-xp 00000000 ca:01 25176839 /usr/lib64/liblzma.so.5.0.99
7f0a811c1000-7f0a813c0000 ---p 00024000 ca:01 25176839 /usr/lib64/liblzma.so.5.0.99
7f0a813c0000-7f0a813c1000 r--p 00023000 ca:01 25176839 /usr/lib64/liblzma.so.5.0.99
7f0a813c1000-7f0a813c2000 rw-p 00024000 ca:01 25176839 /usr/lib64/liblzma.so.5.0.99
7f0a813c2000-7f0a81421000 r-xp 00000000 ca:01 25204742 /usr/lib64/libpcre.so.1.2.0
7f0a81421000-7f0a81621000 ---p 0005f000 ca:01 25204742 /usr/lib64/libpcre.so.1.2.0
7f0a81621000-7f0a81622000 r--p 0005f000 ca:01 25204742 /usr/lib64/libpcre.so.1.2.0
7f0a81622000-7f0a81623000 rw-p 00060000 ca:01 25204742 /usr/lib64/libpcre.so.1.2.0
7f0a81623000-7f0a81625000 r-xp 00000000 ca:01 25748924 /usr/lib64/libXau.so.6.0.0
7f0a81625000-7f0a81825000 ---p 00002000 ca:01 25748924 /usr/lib64/libXau.so.6.0.0
7f0a81825000-7f0a81826000 r--p 00002000 ca:01 25748924 /usr/lib64/libXau.so.6.0.0
7f0a81826000-7f0a81827000 rw-p 00003000 ca:01 25748924 /usr/lib64/libXau.so.6.0.0
7f0a81827000-7f0a81848000 r-xp 00000000 ca:01 25204751 /usr/lib64/libselinux.so.1
7f0a81848000-7f0a81a48000 ---p 00021000 ca:01 25204751 /usr/lib64/libselinux.so.1
7f0a81a48000-7f0a81a49000 r--p 00021000 ca:01 25204751 /usr/lib64/libselinux.so.1
7f0a81a49000-7f0a81a4a000 rw-p 00022000 ca:01 25204751 /usr/lib64/libselinux.so.1
7f0a81a4a000-7f0a81a4c000 rw-p 00000000 00:00 0
7f0a81a4c000-7f0a81a57000 r-xp 00000000 ca:01 25614347 /usr/lib64/libdrm.so.2.4.0
7f0a81a57000-7f0a81c56000 ---p 0000b000 ca:01 25614347 /usr/lib64/libdrm.so.2.4.0
7f0a81c56000-7f0a81c57000 r--p 0000a000 ca:01 25614347 /usr/lib64/libdrm.so.2.4.0
7f0a81c57000-7f0a81c58000 rw-p 0000b000 ca:01 25614347 /usr/lib64/libdrm.so.2.4.0
7f0a81c58000-7f0a81c5d000 r-xp 00000000 ca:01 25780721 /usr/lib64/libXxf86vm.so.1.0.0
7f0a81c5d000-7f0a81e5c000 ---p 00005000 ca:01 25780721 /usr/lib64/libXxf86vm.so.1.0.0
7f0a81e5c000-7f0a81e5d000 r--p 00004000 ca:01 25780721 /usr/lib64/libXxf86vm.so.1.0.0
7f0a81e5d000-7f0a81e5e000 rw-p 00005000 ca:01 25780721 /usr/lib64/libXxf86vm.so.1.0.0
7f0a81e5e000-7f0a81e62000 r-xp 00000000 ca:01 25748932 /usr/lib64/libxcb-dri2.so.0.0.0
7f0a81e62000-7f0a82061000 ---p 00004000 ca:01 25748932 /usr/lib64/libxcb-dri2.so.0.0.0
7f0a82061000-7f0a82062000 r--p 00003000 ca:01 25748932 /usr/lib64/libxcb-dri2.so.0.0.0
7f0a82062000-7f0a82063000 rw-p 00004000 ca:01 25748932 /usr/lib64/libxcb-dri2.so.0.0.0
7f0a82063000-7f0a8207a000 r-xp 00000000 ca:01 25748934 /usr/lib64/libxcb-glx.so.0.0.0
7f0a8207a000-7f0a8227a000 ---p 00017000 ca:01 25748934 /usr/lib64/libxcb-glx.so.0.0.0
7f0a8227a000-7f0a8227c000 r--p 00017000 ca:01 25748934 /usr/lib64/libxcb-glx.so.0.0.0
7f0a8227c000-7f0a8227d000 rw-p 00019000 ca:01 25748934 /usr/lib64/libxcb-glx.so.0.0.0
7f0a8227d000-7f0a8227e000 r-xp 00000000 ca:01 25780699 /usr/lib64/libX11-xcb.so.1.0.0
7f0a8227e000-7f0a8247d000 ---p 00001000 ca:01 25780699 /usr/lib64/libX11-xcb.so.1.0.0
7f0a8247d000-7f0a8247e000 r--p 00000000 ca:01 25780699 /usr/lib64/libX11-xcb.so.1.0.0
7f0a8247e000-7f0a8247f000 rw-p 00001000 ca:01 25780699 /usr/lib64/libX11-xcb.so.1.0.0
7f0a8247f000-7f0a82484000 r-xp 00000000 ca:01 25780705 /usr/lib64/libXfixes.so.3.1.0
7f0a82484000-7f0a82683000 ---p 00005000 ca:01 25780705 /usr/lib64/libXfixes.so.3.1.0
7f0a82683000-7f0a82684000 r--p 00004000 ca:01 25780705 /usr/lib64/libXfixes.so.3.1.0
7f0a82684000-7f0a82685000 rw-p 00005000 ca:01 25780705 /usr/lib64/libXfixes.so.3.1.0
7f0a82685000-7f0a82687000 r-xp 00000000 ca:01 25780739 /usr/lib64/libXdamage.so.1.1.0
7f0a82687000-7f0a82886000 ---p 00002000 ca:01 25780739 /usr/lib64/libXdamage.so.1.1.0
7f0a82886000-7f0a82887000 r--p 00001000 ca:01 25780739 /usr/lib64/libXdamage.so.1.1.0
7f0a82887000-7f0a82888000 rw-p 00002000 ca:01 25780739 /usr/lib64/libXdamage.so.1.1.0
7f0a82888000-7f0a828a9000 r-xp 00000000 ca:01 25780773 /usr/lib64/libglapi.so.0.0.0
7f0a828a9000-7f0a82aa9000 ---p 00021000 ca:01 25780773 /usr/lib64/libglapi.so.0.0.0
7f0a82aa9000-7f0a82aac000 r--p 00021000 ca:01 25780773 /usr/lib64/libglapi.so.0.0.0
7f0a82aac000-7f0a82aad000 rw-p 00024000 ca:01 25780773 /usr/lib64/libglapi.so.0.0.0
7f0a82aad000-7f0a82aae000 rw-p 00000000 00:00 0
7f0a82aae000-7f0a82ace000 r-xp 00000000 ca:01 25829644 /usr/lib64/libxcb.so.1.1.0
7f0a82ace000-7f0a82ccd000 ---p 00020000 ca:01 25829644 /usr/lib64/libxcb.so.1.1.0
7f0a82ccd000-7f0a82cce000 r--p 0001f000 ca:01 25829644 /usr/lib64/libxcb.so.1.1.0
7f0a82cce000-7f0a82ccf000 rw-p 00020000 ca:01 25829644 /usr/lib64/libxcb.so.1.1.0
7f0a82ccf000-7f0a82cd3000 r-xp 00000000 ca:01 25204782 /usr/lib64/libuuid.so.1.3.0
7f0a82cd3000-7f0a82ed2000 ---p 00004000 ca:01 25204782 /usr/lib64/libuuid.so.1.3.0
7f0a82ed2000-7f0a82ed3000 r--p 00003000 ca:01 25204782 /usr/lib64/libuuid.so.1.3.0
7f0a82ed3000-7f0a82ed4000 rw-p 00004000 ca:01 25204782 /usr/lib64/libuuid.so.1.3.0
7f0a82ed4000-7f0a82ed6000 r-xp 00000000 ca:01 81023275 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmuuid-4.11.so.1
7f0a82ed6000-7f0a830d6000 ---p 00002000 ca:01 81023275 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmuuid-4.11.so.1
7f0a830d6000-7f0a830d7000 r--p 00002000 ca:01 81023275 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmuuid-4.11.so.1
7f0a830d7000-7f0a830d8000 rw-p 00003000 ca:01 81023275 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmuuid-4.11.so.1
7f0a830d8000-7f0a83116000 r-xp 00000000 ca:01 81023273 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmcharls-4.11.so.1
7f0a83116000-7f0a83315000 ---p 0003e000 ca:01 81023273 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmcharls-4.11.so.1
7f0a83315000-7f0a83317000 r--p 0003d000 ca:01 81023273 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmcharls-4.11.so.1
7f0a83317000-7f0a83318000 rw-p 0003f000 ca:01 81023273 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmcharls-4.11.so.1
7f0a83318000-7f0a83328000 rw-p 00000000 00:00 0
7f0a83328000-7f0a83359000 r-xp 00000000 ca:01 81023277 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmopenjpeg-4.11.so.1
7f0a83359000-7f0a83558000 ---p 00031000 ca:01 81023277 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmopenjpeg-4.11.so.1
7f0a83558000-7f0a83559000 r--p 00030000 ca:01 81023277 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmopenjpeg-4.11.so.1
7f0a83559000-7f0a8355a000 rw-p 00031000 ca:01 81023277 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmopenjpeg-4.11.so.1
7f0a8355a000-7f0a8358f000 r-xp 00000000 ca:01 81023283 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg16-4.11.so.1
7f0a8358f000-7f0a8378f000 ---p 00035000 ca:01 81023283 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg16-4.11.so.1
7f0a8378f000-7f0a83790000 r--p 00035000 ca:01 81023283 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg16-4.11.so.1
7f0a83790000-7f0a83791000 rw-p 00036000 ca:01 81023283 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg16-4.11.so.1
7f0a83791000-7f0a837c6000 r-xp 00000000 ca:01 81023291 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg12-4.11.so.1
7f0a837c6000-7f0a839c6000 ---p 00035000 ca:01 81023291 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg12-4.11.so.1
7f0a839c6000-7f0a839c7000 r--p 00035000 ca:01 81023291 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg12-4.11.so.1
7f0a839c7000-7f0a839c8000 rw-p 00036000 ca:01 81023291 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg12-4.11.so.1
7f0a839c8000-7f0a839fd000 r-xp 00000000 ca:01 81023287 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg8-4.11.so.1
7f0a839fd000-7f0a83bfc000 ---p 00035000 ca:01 81023287 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg8-4.11.so.1
7f0a83bfc000-7f0a83bfd000 r--p 00034000 ca:01 81023287 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg8-4.11.so.1
7f0a83bfd000-7f0a83bfe000 rw-p 00035000 ca:01 81023287 /home/ec2-user/Projects/CIP-build/ITKv4-build/lib/libitkgdcmjpeg8-4.11.so.1
7f0a83bfe000-7f0a83c61000 r-xp 00000000 ca:01 25780775 /usr/lib64/libGL.so.1.2.0
7f0a83c61000-7f0a83e61000 ---p 00063000 ca:01 25780775 /usr/lib64/libGL.so.1.2.0
7f0a83e61000-7f0a83e63000 r--p 00063000 ca:01 25780775 /usr/lib64/libGL.so.1.2.0
7f0a83e63000-7f0a83e64000 rw-p 00065000 ca:01 25780775 /usr/lib64/libGL.so.1.2.0
7f0a83e64000-7f0a83e65000 rw-p 00000000 00:00 0
7f0a83e65000-7f0a83ee3000 r-xp 00000000 ca:01 25780780 /usr/lib64/libGLU.so.1.3.1
7f0a83ee3000-7f0a840e3000 ---p 0007e000 ca:01 25780780 /usr/lib64/libGLU.so.1.3.1
7f0a840e3000-7f0a840e4000 r--p 0007e000 ca:01 25780780 /usr/lib64/libGLU.so.1.3.1
7f0a840e4000-7f0a840e5000 rw-p 0007f000 ca:01 25780780 /usr/lib64/libGLU.so.1.3.1
7f0a840e5000-7f0a8429b000 r-xp 00000000 ca:01 25166970 /usr/lib64/libc-2.17.so
7f0a8429b000-7f0a8449b000 ---p 001b6000 ca:01 25166970 /usr/lib64/libc-2.17.so
7f0a8449b000-7f0a8449f000 r--p 001b6000 ca:01 25166970 /usr/lib64/libc-2.17.so
7f0a8449f000-7f0a844a1000 rw-p 001ba000 ca:01 25166970 /usr/lib64/libc-2.17.so
7f0a844a1000-7f0a844a6000 rw-p 00000000 00:00 0
7f0a844a6000-7f0a844bb000 r-xp 00000000 ca:01 25165961 /usr/lib64/libgcc_s-4.8.2-20140120.so.1
7f0a844bb000-7f0a846ba000 ---p 00015000 ca:01 25165961 /usr/lib64/libgcc_s-4.8.2-20140120.so.1
7f0a846ba000-7f0a846bb000 r--p 00014000 ca:01 25165961 /usr/lib64/libgcc_s-4.8.2-20140120.so.1
7f0a846bb000-7f0a846bc000 rw-p 00015000 ca:01 25165961 /usr/lib64/libgcc_s-4.8.2-20140120.so.1
7f0a846bc000-7f0a847a5000 r-xp 00000000 ca:01 25176841 /usr/lib64/libstdc++.so.6.0.19
7f0a847a5000-7f0a849a4000 ---p 000e9000 ca:01 25176841 /usr/lib64/libstdc++.so.6.0.19
7f0a849a4000-7f0a849ac000 r--p 000e8000 ca:01 25176841 /usr/lib64/libstdc++.so.6.0.19
7f0a849ac000-7f0a849ae000 rw-p 000f0000 ca:01 25176841 /usr/lib64/libstdc++.so.6.0.19
7f0a849ae000-7f0a849c3000 rw-p 00000000 00:00 0
7f0a849c3000-7f0a84dfb000 r-xp 00000000 ca:01 59644822 /home/ec2-user/Projects/CIP-build/teem-build/bin/libteem.so.1.12.0
7f0a84dfb000-7f0a84ffb000 ---p 00438000 ca:01 59644822 /home/ec2-user/Projects/CIP-build/teem-build/bin/libteem.so.1.12.0
7f0a84ffb000-7f0a85001000 r--p 00438000 ca:01 59644822 /home/ec2-user/Projects/CIP-build/teem-build/bin/libteem.so.1.12.0
7f0a85001000-7f0a85023000 rw-p 0043e000 ca:01 59644822 /home/ec2-user/Projects/CIP-build/teem-build/bin/libteem.so.1.12.0
7f0a85023000-7f0a85124000 r-xp 00000000 ca:01 25166978 /usr/lib64/libm-2.17.so
7f0a85124000-7f0a85323000 ---p 00101000 ca:01 25166978 /usr/lib64/libm-2.17.so
7f0a85323000-7f0a85324000 r--p 00100000 ca:01 25166978 /usr/lib64/libm-2.17.so
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ERROR: In /home/ilan/minonda/conda-bld/work/VTK-6.3.0/IO/Legacy/vtkDataReader.cxx, line 430
vtkPolyDataReader (0x31902b0): Unable to open file: /tmp/tmp7lY8LJ/vessel_particles.vtk
ERROR: In /home/ilan/minonda/conda-bld/work/VTK-6.3.0/Common/DataModel/vtkPointLocator.cxx, line 859
vtkPointLocator (0x31b49c0): No points to subdivide
ERROR: In /home/ilan/minonda/conda-bld/work/VTK-6.3.0/Common/DataModel/vtkPointLocator.cxx, line 859
vtkPointLocator (0x31b49c0): No points to subdivide
