Tuesday, August 11 2026 23:42:55
CIP
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ERROR: test_vessel_particles_mask_workflow.test_vessel_particles_mask_workflow
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Traceback (most recent call last):
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py", line 19, in test_vessel_particles_mask_workflow
wf.run()
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/workflows.py", line 597, in run
runner.run(execgraph, updatehash=updatehash, config=self.config)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 57, in run
report_nodes_not_run(notrun)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/base.py", line 95, in report_nodes_not_run
raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details
-------------------- >> begin captured logging << --------------------
workflow: INFO: ['check', 'execution', 'logging']
workflow: INFO: Running serially.
workflow: INFO: Executing node compute_feature_strength in dir: /tmp/tmpFLdF24/VesselParticlesMaskWorkflow/compute_feature_strength
workflow: INFO: Running: ComputeFeatureStrength --C 245.000000 --alpha 0.630000 --alphase 0.250000 --beta 0.510000 --betase 0.100000 --feature RidgeLine --inFileName /home/ec2-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel.nrrd --kappa 0.500000 --method Frangi --nu 0.000000 --outFileName /tmp/tmpq3_HQb/vessel_strength.nhdr --ssm 1.000000 --std 0.7,4.0,7.0 --threads 0
workflow: ERROR: ['Node compute_feature_strength failed to run on host Linux1.Amazon.ACIL.']
workflow: INFO: Saving crash info to /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160806-035938-ec2-user-compute_feature_strength-d18a9521-0f9f-4c5b-abbe-ea047a901386.pklz
workflow: INFO: Traceback (most recent call last):
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 39, in run
node.run(updatehash=updatehash)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 394, in run
self._run_interface()
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 504, in _run_interface
self._result = self._run_command(execute)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 630, in _run_command
result = self._interface.run()
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1043, in run
runtime = self._run_wrapper(runtime)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1660, in _run_wrapper
runtime = self._run_interface(runtime)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1686, in _run_interface
(self.cmd.split()[0], runtime.hostname))
IOError: command 'ComputeFeatureStrength' could not be found on host Linux1.Amazon.ACIL
Interface ComputeFeatureStrength failed to run.
workflow: INFO: Executing node compute_distance_transform in dir: /tmp/tmpRjV2HI/VesselParticlesMaskWorkflow/compute_distance_transform
workflow: INFO: Running: ComputeDistanceMap --distanceMap /tmp/tmpq3_HQb/vessel_distanceMap.nhdr --labelMap /home/ec2-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel_volumeMask.nrrd
workflow: ERROR: ['Node compute_distance_transform failed to run on host Linux1.Amazon.ACIL.']
workflow: INFO: Saving crash info to /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160806-035938-ec2-user-compute_distance_transform-457953c0-9dd6-443d-a925-714255e951db.pklz
workflow: INFO: Traceback (most recent call last):
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 39, in run
node.run(updatehash=updatehash)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 394, in run
self._run_interface()
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 504, in _run_interface
self._result = self._run_command(execute)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 630, in _run_command
result = self._interface.run()
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1043, in run
runtime = self._run_wrapper(runtime)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1660, in _run_wrapper
runtime = self._run_interface(runtime)
File "/home/ec2-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1686, in _run_interface
(self.cmd.split()[0], runtime.hostname))
IOError: command 'ComputeDistanceMap' could not be found on host Linux1.Amazon.ACIL
Interface ComputeDistanceMap failed to run.
workflow: INFO: ***********************************
workflow: ERROR: could not run node: VesselParticlesMaskWorkflow.compute_feature_strength
workflow: INFO: crashfile: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160806-035938-ec2-user-compute_feature_strength-d18a9521-0f9f-4c5b-abbe-ea047a901386.pklz
workflow: ERROR: could not run node: VesselParticlesMaskWorkflow.compute_distance_transform
workflow: INFO: crashfile: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160806-035938-ec2-user-compute_distance_transform-457953c0-9dd6-443d-a925-714255e951db.pklz
workflow: INFO: ***********************************
--------------------- >> end captured logging << ---------------------
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Ran 1 test in 0.288s
FAILED (errors=1)
