Wednesday, August 12 2026 00:16:42
CIP
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ERROR: test_vessel_particles_mask_workflow.test_vessel_particles_mask_workflow
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py", line 19, in test_vessel_particles_mask_workflow
wf.run()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/workflows.py", line 597, in run
runner.run(execgraph, updatehash=updatehash, config=self.config)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 57, in run
report_nodes_not_run(notrun)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/base.py", line 95, in report_nodes_not_run
raise RuntimeError(('Workflow did not execute cleanly. '
RuntimeError: Workflow did not execute cleanly. Check log for details
-------------------- >> begin captured logging << --------------------
workflow: INFO: Unable to import packages needed for runtime profiling. Turning off runtime profiler. Reason: No module named psutil
workflow: INFO: ['check', 'execution', 'logging']
workflow: INFO: Running serially.
workflow: INFO: Executing node compute_distance_transform in dir: /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpPMYc7I/VesselParticlesMaskWorkflow/compute_distance_transform
workflow: INFO: Running: ComputeDistanceMap --distanceMap /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpaV3Oio/vessel_distanceMap.nhdr --labelMap /Users/acil-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel_volumeMask.nrrd
workflow: ERROR: ['Node compute_distance_transform failed to run on host bwh002376.bwh.harvard.edu.']
workflow: INFO: Saving crash info to /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160805-232033-acil-user-compute_distance_transform-d13d8ec3-4f02-46ff-9737-61caf180349d.pklz
workflow: INFO: Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 39, in run
node.run(updatehash=updatehash)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 394, in run
self._run_interface()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 504, in _run_interface
self._result = self._run_command(execute)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 630, in _run_command
result = self._interface.run()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1034, in run
runtime = self._run_wrapper(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1660, in _run_wrapper
runtime = self._run_interface(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1686, in _run_interface
(self.cmd.split()[0], runtime.hostname))
IOError: command 'ComputeDistanceMap' could not be found on host bwh002376.bwh.harvard.edu
Interface ComputeDistanceMap failed to run.
workflow: INFO: Executing node compute_feature_strength in dir: /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmp9viNaM/VesselParticlesMaskWorkflow/compute_feature_strength
workflow: INFO: Running: ComputeFeatureStrength --C 245.000000 --alpha 0.630000 --alphase 0.250000 --beta 0.510000 --betase 0.100000 --feature RidgeLine --inFileName /Users/acil-user/Projects/CIP-build/CIP-build/Testing/Data/Input/vessel.nrrd --kappa 0.500000 --method Frangi --nu 0.000000 --outFileName /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpaV3Oio/vessel_strength.nhdr --ssm 1.000000 --std 0.7,4.0,7.0 --threads 0
workflow: ERROR: ['Node compute_feature_strength failed to run on host bwh002376.bwh.harvard.edu.']
workflow: INFO: Saving crash info to /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160805-232033-acil-user-compute_feature_strength-9e997b16-357f-44b1-aa36-afc2e3e1447f.pklz
workflow: INFO: Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/plugins/linear.py", line 39, in run
node.run(updatehash=updatehash)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 394, in run
self._run_interface()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 504, in _run_interface
self._result = self._run_command(execute)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/pipeline/engine/nodes.py", line 630, in _run_command
result = self._interface.run()
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1034, in run
runtime = self._run_wrapper(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1660, in _run_wrapper
runtime = self._run_interface(runtime)
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nipype/interfaces/base.py", line 1686, in _run_interface
(self.cmd.split()[0], runtime.hostname))
IOError: command 'ComputeFeatureStrength' could not be found on host bwh002376.bwh.harvard.edu
Interface ComputeFeatureStrength failed to run.
workflow: INFO: ***********************************
workflow: ERROR: could not run node: VesselParticlesMaskWorkflow.compute_distance_transform
workflow: INFO: crashfile: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160805-232033-acil-user-compute_distance_transform-d13d8ec3-4f02-46ff-9737-61caf180349d.pklz
workflow: ERROR: could not run node: VesselParticlesMaskWorkflow.compute_feature_strength
workflow: INFO: crashfile: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/crash-20160805-232033-acil-user-compute_feature_strength-9e997b16-357f-44b1-aa36-afc2e3e1447f.pklz
workflow: INFO: ***********************************
--------------------- >> end captured logging << ---------------------
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Ran 1 test in 0.081s
FAILED (errors=1)
