/home/jonieva/Projects/CIP-build/CIP-build/CommandLineTools/Testing/bin/RegisterCTTest "--compareCT" "/home/jonieva/Projects/CIP/Testing/Data/Input/ct-64.nrrd" "/home/jonieva/Projects/CIP-build/CIP-build/CommandLineTools/Testing/Output/RegisterCT_Test_dummy_ct.nrrd" "--compareIntensityTolerance" "15" "ModuleEntryPoint" "--fct" "/home/jonieva/Projects/CIP/Testing/Data/Input/ct-64.nrrd" "--mct" "/home/jonieva/Projects/CIP/Testing/Data/Input/ct-64-transformed.nrrd" "--otx" "/home/jonieva/Projects/CIP-build/CIP-build/CommandLineTools/Testing/Output/RegisterCT_Test_dummy_tx.tfm" "--dim" "3" "--oct" "/home/jonieva/Projects/CIP-build/CIP-build/CommandLineTools/Testing/Output/RegisterCT_Test_dummy_ct.nrrd"

Reading CT from file...
Reading CT from file...
Initializing transform...
[1, 1, 1, 1, 1, 1, 1, 1, 1, 0.009999999776482582, 0.009999999776482582, 0.009999999776482582]
  registering 
Optimizer stop condition = RegularStepGradientDescentOptimizer: Step too small after 29 iterations. Current step (0.00078125) is less than minimum step (0.001).
Starting CT affine registration...
Writing final transform
output transform filename=/home/jonieva/Projects/CIP-build/CIP-build/CommandLineTools/Testing/Output/RegisterCT_Test_dummy_tx.tfm
Writing registration XML file
Writing transform...
Resampling moving image...
DONE.