Wednesday, August 12 2026 07:36:24
CIP
1.46s| Exit Value | 1 |
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FAIL: test_parenchyma_phenotypes.test_execute
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py", line 23, in test_execute
df = paren_pheno.execute(lm, 'simple', np.array([1., 1., 1.]), ct=ct)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 344, in execute
c.GetChestWildCardName(), phenos_to_compute)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 404, in add_pheno_group
assert phenos_to_compute in self.pheno_names_, "Invalid phenotype name"
AssertionError: Invalid phenotype name
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FAIL: test_parenchyma_phenotypes.test_execute2
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py", line 126, in test_execute2
df = paren_pheno.execute(lm, 'simple', np.array([1., 1., 1.]), ct=ct)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 344, in execute
c.GetChestWildCardName(), phenos_to_compute)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 404, in add_pheno_group
assert phenos_to_compute in self.pheno_names_, "Invalid phenotype name"
AssertionError: Invalid phenotype name
======================================================================
FAIL: test_parenchyma_phenotypes.test_execute3
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py", line 136, in test_execute3
df = paren_pheno.execute(lm, 'simple', np.array([1., 1., 1.]), ct=ct)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 350, in execute
c.GetChestTypeName(t), phenos_to_compute)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 404, in add_pheno_group
assert phenos_to_compute in self.pheno_names_, "Invalid phenotype name"
AssertionError: Invalid phenotype name
======================================================================
FAIL: test_parenchyma_phenotypes.test_execute4
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py", line 146, in test_execute4
df = paren_pheno.execute(lm, 'simple', np.array([1., 1., 1.]), ct=ct)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 363, in execute
c.GetChestTypeName(int(ps[i, 1])), phenos_to_compute)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 404, in add_pheno_group
assert phenos_to_compute in self.pheno_names_, "Invalid phenotype name"
AssertionError: Invalid phenotype name
======================================================================
FAIL: test_parenchyma_phenotypes.test_execute5
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py", line 158, in test_execute5
df = paren_pheno.execute(lm, 'simple', np.array([1., 1., 1.]), ct)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 344, in execute
c.GetChestWildCardName(), phenos_to_compute)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 404, in add_pheno_group
assert phenos_to_compute in self.pheno_names_, "Invalid phenotype name"
AssertionError: Invalid phenotype name
======================================================================
FAIL: test_parenchyma_phenotypes.test_execute6
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Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py", line 193, in test_execute6
pheno_names=['TypeFrac'])
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 363, in execute
c.GetChestTypeName(int(ps[i, 1])), phenos_to_compute)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py", line 404, in add_pheno_group
assert phenos_to_compute in self.pheno_names_, "Invalid phenotype name"
AssertionError: Invalid phenotype name
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Ran 6 tests in 0.035s
FAILED (failures=6)
