38.21s
Test: test_vessel_particles
(Failed)
Build: CIP-Darwin-13.4.0-x86_64-incr-SL-ON
(bwh002376.bwh.harvard.edu)
on 2016-02-01 23:02:44
Repository revision: e717e828872ad4f16bb85146f37e34487b2bb432
Show Command Line/Users/acil-user/Projects/CIP-build/CIPPython-install/bin/nosetests "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py"
Display graphs:
Test outputgageStackBlurGet: no file "/var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/V-000-010.nrrd"; will recompute blurrings
gageStackBlur: (FFT-based blurring not applicable: need spatial blur=no, boundary=bleed, kernel=discretegauss:1,5)
_stackBlurSpatial: . . . blurring 0 / 10 (scale 0) . . .
_stackBlurSpatial: scale 0 == time 0 (tau 0);
timeLeft 0 = 0 - 0
pass 0 (timeLeft=0 => time=0, sigma=0) ...
done.
_stackBlurSpatial: . . . blurring 1 / 10 (scale 0.279195) . . .
_stackBlurSpatial: scale 0.279195 == time 0.07795 (tau 0.0222845);
timeLeft 0.07795 = 0.07795 - 0
pass 0 (timeLeft=0.07795 => time=0.07795, sigma=0.279195) ...
done.
_stackBlurSpatial: . . . blurring 2 / 10 (scale 0.568784) . . .
_stackBlurSpatial: scale 0.568784 == time 0.323515 (tau 0.103074);
timeLeft 0.245565 = 0.323515 - 0.07795
pass 0 (timeLeft=0.245565 => time=0.245565, sigma=0.495546) ...
done.
_stackBlurSpatial: . . . blurring 3 / 10 (scale 0.885916) . . .
_stackBlurSpatial: scale 0.885916 == time 0.784848 (tau 0.293208);
timeLeft 0.461333 = 0.784848 - 0.323515
pass 0 (timeLeft=0.461333 => time=0.461333, sigma=0.679215) ...
done.
_stackBlurSpatial: . . . blurring 4 / 10 (scale 1.26313) . . .
_stackBlurSpatial: scale 1.26313 == time 1.59551 (tau 0.649332);
timeLeft 0.810657 = 1.59551 - 0.784848
pass 0 (timeLeft=0.810657 => time=0.810657, sigma=0.900365) ...
done.
_stackBlurSpatial: . . . blurring 5 / 10 (scale 1.72014) . . .
_stackBlurSpatial: scale 1.72014 == time 2.95889 (tau 1.02565);
timeLeft 1.36339 = 2.95889 - 1.59551
pass 0 (timeLeft=1.36339 => time=1.36339, sigma=1.16764) ...
done.
_stackBlurSpatial: . . . blurring 6 / 10 (scale 2.38512) . . .
_stackBlurSpatial: scale 2.38512 == time 5.6888 (tau 1.38159);
timeLeft 2.72991 = 5.6888 - 2.95889
pass 0 (timeLeft=2.72991 => time=2.72991, sigma=1.65224) ...
done.
_stackBlurSpatial: . . . blurring 7 / 10 (scale 3.39289) . . .
_stackBlurSpatial: scale 3.39289 == time 11.5117 (tau 1.74687);
timeLeft 5.82289 = 11.5117 - 5.6888
pass 0 (timeLeft=5.82289 => time=5.82289, sigma=2.41307) ...
done.
_stackBlurSpatial: . . . blurring 8 / 10 (scale 4.62553) . . .
_stackBlurSpatial: scale 4.62553 == time 21.3955 (tau 2.06214);
timeLeft 9.88384 = 21.3955 - 11.5117
pass 0 (timeLeft=9.88384 => time=9.88384, sigma=3.14386) ...
done.
_stackBlurSpatial: . . . blurring 9 / 10 (scale 6) . . .
_stackBlurSpatial: scale 6 == time 36 (tau 2.32478);
timeLeft 14.6045 = 36 - 21.3955
pass 0 (timeLeft=14.6045 => time=14.6045, sigma=3.82158) ...
done.
gageStackBlurGet: will reuse 10 /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/V-%03u-010.nrrd pre-blurrings.
gageStackBlurGet: will reuse 10 /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/V-%03u-010.nrrd pre-blurrings.
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
gageStackBlurParmScaleSet: !!! This function is deprecated; use gageStackBlurParmSigmaSet instead !!!
Reading file for NA...
Reading file for hevec1...
Reading file for hevec0...
Reading file for val...
Reading file for hevec2...
Reading file for h0...
Reading file for h1...
Reading file for h2...
Reading file for hess...
Reading file for hmode...
Writing poly data...
DONE.
F
======================================================================
FAIL: test_vessel_particles.test_vessel_particles
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/acil-user/Projects/CIP-build/CIPPython-install/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py", line 56, in test_vessel_particles
"Vessel particle Dice score lower than expected"
AssertionError: Vessel particle Dice score lower than expected
-------------------- >> begin captured stdout << ---------------------
/var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap
Resetting param groups...
Building param groups...
Starting pass 1...
Finished pass 1.
Starting pass 2...
Finished pass 2.
Starting pass 3...
Finished pass 3.
Probing...
Finished probing.
Saving to vtk...
-o /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/vessel_particles.vtk -b -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/pass3.nrrd -a NA -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/hevec1.nrrd -a hevec1 -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/hevec0.nrrd -a hevec0 -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/val.nrrd -a val -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/hevec2.nrrd -a hevec2 -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/heval0.nrrd -a h0 -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/heval1.nrrd -a h1 -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/heval2.nrrd -a h2 -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/hess.nrrd -a hess -i /var/folders/gj/9q4d_d3s3r34xj5yqjvfh_s00000gp/T/tmpKBl1Ap/hmode.nrrd -a hmode --irad 0.8 --srad 4 --liveth -100 --seedth -80 --spacing 1.0,1.0,1.0 --cipr UndefinedRegion --cipt Vessel
Cleaning tempoarary directory...
--------------------- >> end captured stdout << ----------------------
----------------------------------------------------------------------
Ran 1 test in 36.507s
FAILED (failures=1)
