Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20150701-0400-Nightly (related builds)
Time: 2015-07-01T23:02:35 EDT
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F34
Compiler Version: unknown
CTest version: ctest-3.0.2

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Stage: Update (0 errors, 0 warnings)

Start Time: 2015-07-01T23:02:04 EDT
End Time: 2015-07-01T23:02:05 EDT
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 3

Configure (0 errors, 0 warnings)

Start Time: 2015-07-01T23:02:06 EDT
End Time: 2015-07-01T23:02:30 EDT
Configure Command: /Users/acil-user/Library/Enthought/Canopy_64bit/User/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 0
Configure Output:
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions with Python in /Users/acil-user/Projects/CIP-build/CIPPython-install/bin/python
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 15 warnings)

Build command: -- -i
Start Time: 2015-07-01T23:02:35 EDT
End Time: 2015-07-01T23:37:47 EDT

View Errors Summary

Build Warnings (15)
-- Could NOT find PythonInterp: Found unsuitable version "2.7.9", but required is at least "3.4" (found /Users/acil-user/anaconda/bin/python)
-- Could NOT find PythonInterp: Found unsuitable version "2.7.9", but required is at least "3.2" (found /Users/acil-user/anaconda/bin/python)
-- Found Sphinx 1.2.3: /Users/acil-user/anaconda/bin/sphinx-build
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
-- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved!
-- Module opencv_shape disabled because opencv_video dependency can't be resolved!
-- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved!
-- Module opencv_superres disabled because opencv_video dependency can't be resolved!
-- Module opencv_ts disabled because opencv_videoio dependency can't be resolved!
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_core".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_features2d".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_flann".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_imgcodecs".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_imgproc".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_ml".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
-- 
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_objdetect".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

-- General configuration for OpenCV 3.0.0-beta =====================================
--   Version control:               3.0.0-beta
-- 
  The LOCATION property should not be read from target "opencv_photo".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.
--     Performance tests:           NO
--     C/C++ Examples:              NO
-- 
--   Install path:                  /.../CIP-build/OpenCV-install
-- 
--   cvconfig.h is in:              /.../CIP-build/OpenCV-build
-- -----------------------------------------------------------------
-- 
-- Configuring done
-- Generating done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   opencv_core
   opencv_features2d
   opencv_flann
   opencv_imgcodecs
Scanning dependencies of target ITKVtkGlue-all
[100%] Built target ITKVtkGlue-all
[ 43%] No install step for 'ITKv4'
[ 44%] Completed 'ITKv4'
[ 48%] Built target ITKv4
[ 49%] Performing update step for 'SlicerExecutionModel'
[ 50%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.
  git checkout -b new_branch_name

HEAD is now at e474608... COMP: Fix MSVC build error in encodingZRL.c
[ 81%] No patch step for 'teem'
[ 83%] Performing update step for 'teem'
[ 84%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake
-- Configuring done
-- Generating done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 6214


File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx Line: 1
Linking CXX static library /.../CIP-build/lib/libCIPUtilities.a
[  2%] Built target CIPUtilities
Scanning dependencies of target CIPCommon
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o
/.../CIP/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:1:9: warning: '_itCIPkMergeChestLabelMapsImageFilter_txx' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]
#ifndef _itCIPkMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Build Log line 6217


File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx Line: 2
/.../CIP/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:2:9: note: '_itkCIPMergeChestLabelMapsImageFilter_txx' is defined here; did you mean '_itCIPkMergeChestLabelMapsImageFilter_txx'?
#define _itkCIPMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        _itCIPkMergeChestLabelMapsImageFilter_txx
1 warning generated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o

Build Log line 6532


File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx Line: 298
Scanning dependencies of target SegmentLungLobesTest
[ 35%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 35%] Built target SegmentLungLobesTest
[ 36%] Generating ReadDicomWriteTagsCLP.h
GenerateCLP --InputXML /.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.xml --OutputCxx /.../CIP-build/CIP-build/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTagsCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "IO" has 4 parameters
Scanning dependencies of target ReadDicomWriteTagsLib
[ 36%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o
/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
        if ( commaLocation != std::string::npos )
             ~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~

Build Log line 6535


File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx Line: 304
/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
        if ( newlineLocation != std::string::npos )
             ~~~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 36%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 36%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../CIP-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 36%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest

View Warnings Summary

Test (59 passed, 6 failed, 0 not run)
View Tests Summary