Site Name: buildkitsandbox
Build Name: Linux-c++ (view notes)
Stamp: 20251112-0028-Experimental (related builds)
Time: 2025-11-11T19:28:15 EST
Type: Experimental

OS Name: Linux
OS Platform: x86_64
OS Release: 6.10.14-linuxkit
OS Version: #1 SMP Tue Oct 14 07:32:13 UTC 2025
Compiler Name: /usr/bin/c++
Compiler Version: 7.5.0
CTest version: ctest-3.10.2

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Start Time: 2025-11-11T19:28:08 EST
End Time: 2025-11-11T19:28:14 EST
Configure Command: "/usr/bin/cmake" "/ChestImagingPlatform"
Configure Return Value: 0
Configure Output: 
--  - C++11
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- vtkInfovisBoostGraphAlgorithms not found! CIP will NOT use Boost
----------- DONE ------------
-- Configuring SEM CLI module: ExampleCLI
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ComputeAirwayWallFromImages
-- Configuring SEM CLI module: FitBSplineToDeformationField
-- Configuring SEM CLI module: CreateVolumeFromSlices
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: UpdateParticlesData
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in /root/miniconda2/bin/python and flags   -fPIC  
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/test_example.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/__pycache__
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/.pytest_cache
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/.pytest_cache/v
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/.pytest_cache/v/cache
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/example_pythonCLI.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/.pytest_cache
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/.pytest_cache/v
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/.pytest_cache/v/cache
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/localHistogramMapper.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/tests/__pycache__
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/localHistogramModel.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/local_histogram_emphysema.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/tests/__pycache__
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/concat_full_h5s.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/volume_file.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/concat_h5_datasets.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/rotation_DO.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/uniform_affine_2D_transform_DO.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/perspective_skew_2D_transform_DO.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/data_operator.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/flipping_DO.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/uniform_similarity_3D_transform_with_coords_DO.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/shear_DO.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/gaussian_noise_DO.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/transpose_2d_DO.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/invert_intensities_DO.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/elastic_2D_transform_DO.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/data_operators/shifting_DO.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/h5_dataset_store.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/.pytest_cache
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/.pytest_cache/v
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/input_output/.pytest_cache/v/cache
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/data
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/data/h5_manager.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/data/data_processing.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/data/data_augmentor.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/data/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/tests
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/tests/test_low_to_high_dose_filter_dcnn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/tests/__pycache__
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/low_to_high_dose_filter_dcnn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/low_to_high_dose_engine.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks/low_to_high_dose_network.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks/low_to_high_dose_metrics_manager.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/lung_segmenter
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/baseline
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/test_lung_segmentation_dcnn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/__init__.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/lung_segmenter_dcnn.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/projects/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/av_segmentation_dataset_generator.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_generator.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/utils
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/utils/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/utils/custom_metrics.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_run_training_testing.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_neural_network.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/BashScripts
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_engine.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/example/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/logic
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/logic/metrics_manager.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/logic/engine.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/logic/utils.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/logic/deep_learning_models_manager.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/logic/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/logic/network.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/dcnn_models_cache
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/dcnn/dcnn_models_cache/lung_segmentation
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/example.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/workflows/fissure_phenotypes_workflow.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/nipype/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/phenotypes/fissure_phenotypes.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
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-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
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-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/quality_control/tests
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/quality_control/xml_points_qc.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/quality_control/vasculature_qc.py
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/segmentation/tests/__pycache__
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/segmentation/rind_core_partition.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/segmentation/.pytest_cache
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/remap_lm.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/biomechanical_metrics.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/cluster_particles.py
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/extract_2D_patches_from_particles.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/merge_particle_files.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/gco_python
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/gco_python/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/gco_python/setup.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/vtk_not_empty.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/visualization
-- Installing: /ChestImagingPlatform-build/CIP-build/cip_python/visualization/display_particles.py
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-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /ChestImagingPlatform-build/CIP-build/cip_python/common/tests/baseline/crop_ct_2slices.nrrd
-- Configuring done
-- Generating done
-- Build files have been written to: /ChestImagingPlatform-build/CIP-build

View Configure Summary

Build (0 errors, 50 warnings)

Build command: /usr/bin/cmake --build . --config "Release"
Start Time: 2025-11-11T19:28:15 EST
End Time: 2025-11-11T19:29:09 EST

View Errors Summary


Build Warnings (50)
[  0%] Copying Resource files
[  0%] Built target copy-external-files
[  2%] Built target CIPUtilities
[  2%] Built target generateChestConventions
[  8%] Built target CIPCommon
[  9%] Built target CIPIO
running build_ext
skipping '/.../cip_python/utils/gco_python/gco_python.cpp' Cython extension (up-to-date)
building 'pygco' extension
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../Utilities/GraphCutsOptimization -I/root/miniconda2/lib/python2.7/site-packages/numpy/core/include -I/root/miniconda2/include/python2.7 -c /.../cip_python/utils/gco_python/gco_python.cpp -o build/temp.linux-x86_64-2.7/.../cip_python/utils/gco_python/gco_python.o

cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
In file included from /root/miniconda2/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
                 from /root/miniconda2/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /root/miniconda2/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /.../cip_python/utils/gco_python/gco_python.cpp:449:

Build Log line 17


  File: /root/miniconda2/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h
  Line: 17 
/root/miniconda2/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../Utilities/GraphCutsOptimization -I/root/miniconda2/lib/python2.7/site-packages/numpy/core/include -I/root/miniconda2/include/python2.7 -c /.../Utilities/GraphCutsOptimization/GCoptimization.cpp -o build/temp.linux-x86_64-2.7/.../Utilities/GraphCutsOptimization/GCoptimization.o

cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../Utilities/GraphCutsOptimization/GCoptimization.h: In constructor 'GCoptimization::GCoptimization(GCoptimization::SiteID, GCoptimization::LabelID)':

Build Log line 24


  File: GraphCutsOptimization/GCoptimization.h
  Line: 311 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:311:10: warning: 'GCoptimization::m_smoothcostFn' will be initialized after [-Wreorder]
  void*   m_smoothcostFn;
          ^~~~~~~~~~~~~~

Build Log line 27


  File: GraphCutsOptimization/GCoptimization.h
  Line: 310 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:310:10: warning:   'void* GCoptimization::m_datacostFn' [-Wreorder]
  void*   m_datacostFn;
          ^~~~~~~~~~~~

Build Log line 30


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 34


  File: GraphCutsOptimization/GCoptimization.h
  Line: 321 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:321:86: warning: 'GCoptimization::m_setupDataCostsSwap' will be initialized after [-Wreorder]
  void (GCoptimization::*m_setupDataCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                      ^

Build Log line 37


  File: GraphCutsOptimization/GCoptimization.h
  Line: 319 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:319:83: warning:   'void (GCoptimization::* GCoptimization::m_setupDataCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)' [-Wreorder]
  void (GCoptimization::*m_setupDataCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                   ^

Build Log line 40


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 44


  File: GraphCutsOptimization/GCoptimization.h
  Line: 322 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:322:88: warning: 'GCoptimization::m_setupSmoothCostsSwap' will be initialized after [-Wreorder]
  void (GCoptimization::*m_setupSmoothCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
                                                                                        ^

Build Log line 47


  File: GraphCutsOptimization/GCoptimization.h
  Line: 320 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:320:85: warning:   'void (GCoptimization::* GCoptimization::m_setupSmoothCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)' [-Wreorder]
  void (GCoptimization::*m_setupSmoothCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
                                                                                     ^

Build Log line 50


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 54


  File: GraphCutsOptimization/GCoptimization.h
  Line: 324 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:324:52: warning: 'GCoptimization::m_updateLabelingDataCosts' will be initialized after [-Wreorder]
  void (GCoptimization::*m_updateLabelingDataCosts)();
                                                    ^

Build Log line 57


  File: GraphCutsOptimization/GCoptimization.h
  Line: 317 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:317:59: warning:   'GCoptimization::EnergyType (GCoptimization::* GCoptimization::m_giveSmoothEnergyInternal)()' [-Wreorder]
  EnergyType (GCoptimization::*m_giveSmoothEnergyInternal)();
                                                           ^

Build Log line 60


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 64


  File: GraphCutsOptimization/GCoptimization.h
  Line: 328 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:328:57: warning: 'GCoptimization::m_solveSpecialCases' will be initialized after [-Wreorder]
  bool (GCoptimization::*m_solveSpecialCases)(EnergyType&);
                                                         ^

Build Log line 67


  File: GraphCutsOptimization/GCoptimization.h
  Line: 326 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:326:36: warning:   'void (* GCoptimization::m_datacostFnDelete)(void*)' [-Wreorder]
  void (*m_datacostFnDelete)(void* f);
                                    ^

Build Log line 70


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 74


  File: GraphCutsOptimization/GCoptimization.h
  Line: 327 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:327:38: warning: 'GCoptimization::m_smoothcostFnDelete' will be initialized after [-Wreorder]
  void (*m_smoothcostFnDelete)(void* f);
                                      ^

Build Log line 77


  File: GraphCutsOptimization/GCoptimization.h
  Line: 298 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:298:11: warning:   'int GCoptimization::m_random_label_order' [-Wreorder]
  int      m_random_label_order;
           ^~~~~~~~~~~~~~~~~~~~

Build Log line 80


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 84


  File: GraphCutsOptimization/GCoptimization.h
  Line: 308 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:308:18: warning: 'GCoptimization::m_verbosity' will be initialized after [-Wreorder]
  int             m_verbosity;
                  ^~~~~~~~~~~

Build Log line 87


  File: GraphCutsOptimization/GCoptimization.h
  Line: 307 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning:   'bool GCoptimization::m_labelingInfoDirty' [-Wreorder]
  bool            m_labelingInfoDirty;
                  ^~~~~~~~~~~~~~~~~~~

Build Log line 90


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 94


  File: GraphCutsOptimization/GCoptimization.h
  Line: 307 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning: 'GCoptimization::m_labelingInfoDirty' will be initialized after [-Wreorder]
  bool            m_labelingInfoDirty;
                  ^~~~~~~~~~~~~~~~~~~

Build Log line 97


  File: GraphCutsOptimization/GCoptimization.h
  Line: 293 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning:   'GCoptimization::SiteID* GCoptimization::m_lookupSiteVar' [-Wreorder]
  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^~~~~~~~~~~~~~~

Build Log line 100


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 104


  File: GraphCutsOptimization/GCoptimization.h
  Line: 293 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning: 'GCoptimization::m_lookupSiteVar' will be initialized after [-Wreorder]
  SiteID  *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
           ^~~~~~~~~~~~~~~

Build Log line 107


  File: GraphCutsOptimization/GCoptimization.h
  Line: 292 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:292:11: warning:   'GCoptimization::LabelID* GCoptimization::m_labeling' [-Wreorder]
  LabelID *m_labeling;
           ^~~~~~~~~~

Build Log line 110


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:

Build Log line 114


  File: GraphCutsOptimization/GCoptimization.h
  Line: 303 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:303:18: warning: 'GCoptimization::m_activeLabelCounts' will be initialized after [-Wreorder]
  SiteID*         m_activeLabelCounts;
                  ^~~~~~~~~~~~~~~~~~~

Build Log line 117


  File: GraphCutsOptimization/GCoptimization.h
  Line: 296 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:296:11: warning:   'int GCoptimization::m_stepsThisCycle' [-Wreorder]
  int      m_stepsThisCycle;
           ^~~~~~~~~~~~~~~~

Build Log line 120


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 89 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning:   when initialized here [-Wreorder]
 GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) 
 ^~~~~~~~~~~~~~
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function 'void GCoptimization::updateLabelingInfo(bool, bool, bool)':

Build Log line 124


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 1177 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:1177:15: warning: unused variable 'energy' [-Wunused-variable]
    EnergyType energy = 0;
               ^~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of 'GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::SiteID = int]':
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:591:25:   required from 'GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:510:35:   required from 'bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:121:26:   required from here

Build Log line 132


  File: GraphCutsOptimization/GCoptimization.h
  Line: 520 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: 'GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_dc' will be initialized after [-Wreorder]
   DataCostT& m_dc;
              ^~~~

Build Log line 135


  File: GraphCutsOptimization/GCoptimization.h
  Line: 519 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   'GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_site' [-Wreorder]
   SiteID m_site;
          ^~~~~~

Build Log line 138


  File: GraphCutsOptimization/GCoptimization.h
  Line: 491 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]
   GreedyIter(DataCostT& dc, SiteID numSites)
   ^~~~~~~~~~
/.../Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of 'GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::SiteID = int]':
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:591:25:   required from 'GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:510:35:   required from 'bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:769:49:   required from here

Build Log line 145


  File: GraphCutsOptimization/GCoptimization.h
  Line: 520 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: 'GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_dc' will be initialized after [-Wreorder]
   DataCostT& m_dc;
              ^~~~

Build Log line 148


  File: GraphCutsOptimization/GCoptimization.h
  Line: 519 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   'GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_site' [-Wreorder]
   SiteID m_site;
          ^~~~~~

Build Log line 151


  File: GraphCutsOptimization/GCoptimization.h
  Line: 491 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]
   GreedyIter(DataCostT& dc, SiteID numSites)
   ^~~~~~~~~~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.h:111:0,
                 from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:
/.../Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of 'void Graph<captype, tcaptype, flowtype>::process_sink_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]':
/.../Utilities/GraphCutsOptimization/maxflow.cpp:584:41:   required from 'flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]'
/.../Utilities/GraphCutsOptimization/energy.h:325:32:   required from 'Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

Build Log line 160


  File: GraphCutsOptimization/maxflow.cpp
  Line: 443 
/.../Utilities/GraphCutsOptimization/maxflow.cpp:443:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if (i->parent = a0_min)
  ^~
/.../Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of 'void Graph<captype, tcaptype, flowtype>::process_source_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]':
/.../Utilities/GraphCutsOptimization/maxflow.cpp:585:43:   required from 'flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]'
/.../Utilities/GraphCutsOptimization/energy.h:325:32:   required from 'Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37:   required from here

Build Log line 167


  File: GraphCutsOptimization/maxflow.cpp
  Line: 366 
/.../Utilities/GraphCutsOptimization/maxflow.cpp:366:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  if (i->parent = a0_min)
  ^~
In file included from /.../Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of 'GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::SiteID = int]':
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:591:25:   required from 'GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:510:35:   required from 'bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from 'void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunction]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:717:54:   required from here

Build Log line 176


  File: GraphCutsOptimization/GCoptimization.h
  Line: 520 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: 'GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_dc' will be initialized after [-Wreorder]
   DataCostT& m_dc;
              ^~~~

Build Log line 179


  File: GraphCutsOptimization/GCoptimization.h
  Line: 519 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   'GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_site' [-Wreorder]
   SiteID m_site;
          ^~~~~~

Build Log line 182


  File: GraphCutsOptimization/GCoptimization.h
  Line: 491 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]
   GreedyIter(DataCostT& dc, SiteID numSites)
   ^~~~~~~~~~
/.../Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of 'GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::SiteID = int]':
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:591:25:   required from 'GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:510:35:   required from 'bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30:   required from 'void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunctionExtra]'
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:725:70:   required from here

Build Log line 190


  File: GraphCutsOptimization/GCoptimization.h
  Line: 520 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: 'GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_dc' will be initialized after [-Wreorder]
   DataCostT& m_dc;
              ^~~~

Build Log line 193


  File: GraphCutsOptimization/GCoptimization.h
  Line: 519 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning:   'GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_site' [-Wreorder]
   SiteID m_site;
          ^~~~~~

Build Log line 196


  File: GraphCutsOptimization/GCoptimization.h
  Line: 491 
/.../Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning:   when initialized here [-Wreorder]
   GreedyIter(DataCostT& dc, SiteID numSites)
   ^~~~~~~~~~
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function 'void GCoptimizationGridGraph::computeNeighborWeights(GCoptimization::EnergyTermType*, GCoptimization::EnergyTermType*)':

Build Log line 200


  File: GraphCutsOptimization/GCoptimization.cpp
  Line: 1514 
/.../Utilities/GraphCutsOptimization/GCoptimization.cpp:1514:30: warning: 'weight' may be used uninitialized in this function [-Wmaybe-uninitialized]
    m_neighborsWeights[i*4+n] = weight;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../Utilities/GraphCutsOptimization -I/root/miniconda2/lib/python2.7/site-packages/numpy/core/include -I/root/miniconda2/include/python2.7 -c /.../Utilities/GraphCutsOptimization/graph.cpp -o build/temp.linux-x86_64-2.7/.../Utilities/GraphCutsOptimization/graph.o

cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../Utilities/GraphCutsOptimization -I/root/miniconda2/lib/python2.7/site-packages/numpy/core/include -I/root/miniconda2/include/python2.7 -c /.../Utilities/GraphCutsOptimization/LinkedBlockList.cpp -o build/temp.linux-x86_64-2.7/.../Utilities/GraphCutsOptimization/LinkedBlockList.o
cc1plus: warning: command line option '-Wstrict-prototypes' is valid for C/ObjC but not for C++
/.../Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function 'void LinkedBlockList::addFront(ListType)':
/.../Utilities/GraphCutsOptimization/LinkedBlockList.cpp:18:35: warning: array subscript has type 'char' [-Wchar-subscripts]
  m_head ->m_item[m_head_block_size] = item;
                                   ^
/.../Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function 'void* LinkedBlockList::next()':
/.../Utilities/GraphCutsOptimization/LinkedBlockList.cpp:26:53: warning: array subscript has type 'char' [-Wchar-subscripts]
  ListType toReturn = m_cursor -> m_item[m_cursor_ind];
                                                     ^
The maximum number of reported warnings or errors has been reached!!!


View Warnings Summary


Test (93  passed, 3 failed, 0 not run)
 
View Tests Summary