----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
CMake Warning at CIP.cmake:76 (FIND_PACKAGE):
By not providing "FindOpenCV.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "OpenCV", but
CMake did not find one.
Could not find a package configuration file provided by "OpenCV" with any
of the following names:
OpenCVConfig.cmake
opencv-config.cmake
Add the installation prefix of "OpenCV" to CMAKE_PREFIX_PATH or set
"OpenCV_DIR" to a directory containing one of the above files. If "OpenCV"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
CMakeLists.txt:38 (include)
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-master-build/CIP-build
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
ModuleDescriptionParser
This warning is for project developers. Use -Wno-dev to suppress it.
-- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved!
-- Module opencv_shape disabled because opencv_video dependency can't be resolved!
-- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved!
-- Module opencv_superres disabled because opencv_video dependency can't be resolved!
-- Module opencv_ts disabled because opencv_videoio dependency can't be resolved!
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
-- Performing Test HAVE_OBJCXX_FOBJC_EXCEPTIONS
-- Performing Test HAVE_OBJCXX_FOBJC_EXCEPTIONS - Success
-- Performing Test HAVE_CXX_WNO_DEPRECATED_DECLARATIONS
-- Performing Test HAVE_CXX_WNO_DEPRECATED_DECLARATIONS - Success
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_core". Use
the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_features2d".
Use the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_flann". Use
the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_imgcodecs".
Use the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
--
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_imgproc". Use
the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_ml". Use the
target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
-- General configuration for OpenCV 3.0.0-beta =====================================
-- Version control: 3.0.0-beta
--
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_objdetect".
Use the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
-- Platform:
-- Host: Darwin 13.4.0 x86_64
-- CMake: 3.0.2
-- CMake generator: Unix Makefiles
The LOCATION property should not be read from target "opencv_photo". Use
the target name directly with add_custom_command, or use the generator
-- Performance tests: NO
-- C/C++ Examples: NO
--
-- Install path: /.../CIP-master-build/OpenCV-install
--
-- cvconfig.h is in: /.../CIP-master-build/OpenCV-build
-- -----------------------------------------------------------------
--
-- Configuring done
-- Generating done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
opencv_core
opencv_features2d
opencv_flann
opencv_imgcodecs
[ 9%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o
[ 9%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o
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Linking CXX static library ../lib/liblibtiff.a
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/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../lib/liblibtiff.a(tif_ojpeg.c.o) has no symbols
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Scanning dependencies of target libjpeg
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[ 61%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/IlmImf/ImfWav.cpp.o
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Linking CXX static library ../lib/libIlmImf.a
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[ 61%] Built target IlmImf
[ 61%] Generating opencl_kernels_core.cpp, opencl_kernels_core.hpp
Scanning dependencies of target opencv_core
[ 61%] Building CXX object modules/core/CMakeFiles/opencv_core.dir/src/algorithm.cpp.o
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[ 61%] Building CXX object modules/core/CMakeFiles/opencv_core.dir/src/conjugate_gradient.cpp.o
[ 61%] Building CXX object modules/core/CMakeFiles/opencv_core.dir/src/convert.cpp.o
CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):
Policy CMP0033 is not set: The export_library_dependencies command should
not be called. Run "cmake --help-policy CMP0033" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
teem
This warning is for project developers. Use -Wno-dev to suppress it.
Linking CXX static library /.../CIP-master-build/lib/libCIPUtilities.a
[ 2%] Built target CIPUtilities
Scanning dependencies of target CIPCommon
[ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o
[ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
[ 3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o
[ 3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o
[ 3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
[ 4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o
/.../CIP-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:1:9: warning: '_itCIPkMergeChestLabelMapsImageFilter_txx' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]
/.../CIP-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:2:9: note: '_itkCIPMergeChestLabelMapsImageFilter_txx' is defined here; did you mean '_itCIPkMergeChestLabelMapsImageFilter_txx'?
#define _itkCIPMergeChestLabelMapsImageFilter_txx
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_itCIPkMergeChestLabelMapsImageFilter_txx
1 warning generated.
[ 4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
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/.../CIP-master/cip_python/wrap_ChestConventions.cpp:4696:27: warning: function '__Pyx_PyInt_As_long' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
^
/.../CIP-master/cip_python/wrap_ChestConventions.cpp:4791:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
^
Scanning dependencies of target SegmentLungLobes
[ 35%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobes.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/SegmentLungLobes
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[ 36%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o
/.../CIP-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( commaLocation != std::string::npos )
~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
/.../CIP-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( newlineLocation != std::string::npos )
~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 37%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 37%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/ReadDicomWriteTags
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Scanning dependencies of target ReadDicomWriteTagsTest