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----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions
-- Configuring done
-- Generating done
-- Build files have been written to: C:/Projects/CIP-build/CIP-build

9>-- Configuring done
9>-- Generating done
9>-- Build files have been written to: /.../CIP-build/CIP-build
9>Performing forcebuild step for 'CIP'
9>Performing build step for 'CIP'
9>Microsoft (R) Visual C++ Express Edition Version 9.0.30729.1.
9>Copyright (C) Microsoft Corp 2007. All rights reserved.
9>1>------ Build started: Project: CIPCommon, Configuration: Release x64 ------
9>2>------ Build started: Project: CIP_PYTHON, Configuration: Release x64 ------
9>2>The system cannot find the path specified.

9>2>Project : error PRJ0019: A tool returned an error code from 

9>2>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\cip_python\CIP_PYTHON.dir\Release\BuildLog.htm"
9>2>CIP_PYTHON - 1 error(s), 0 warning(s)
9>1>Compiling...
9>1>vtkComputeAirwayWallPolyData.cxx

9>146>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\ComputeAirwayWallFromParticles\ComputeAirwayWallFromParticles.dir\Release\BuildLog.htm"
9>146>ComputeAirwayWallFromParticles - 0 error(s), 0 warning(s)
9>147>------ Build started: Project: ClassifyFissureParticlesTest, Configuration: Release x64 ------
9>147>Performing Pre-Link Event...
9>147>Linking...
9>147>   Creating library C:\Projects\CIP-build\lib\Release\ClassifyFissureParticlesTest.lib and object C:\Projects\CIP-build\lib\Release\ClassifyFissureParticlesTest.exp
9>147>Embedding manifest...
9>147>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\ClassifyFissureParticles\ClassifyFissureParticlesTest.dir\Release\BuildLog.htm"
9>147>ClassifyFissureParticlesTest - 0 error(s), 0 warning(s)
9>========== Build: 146 succeeded, 1 failed, 65 up-to-date, 0 skipped ==========

9>Project : error PRJ0019: A tool returned an error code from "Performing build step for 'CIP'"

9>Build log was saved at "file://c:\Projects\CIP-build\CIP.dir\Release\BuildLog.htm"
9>CIP - 2 error(s), 14 warning(s)
========== Build: 8 succeeded, 1 failed, 3 up-to-date, 0 skipped ==========

9>1>..\..\..\CIP\Common\vtkComputeAirwayWallPolyData.cxx(614) : warning C4554: '&' : check operator precedence for possible error; use parentheses to clarify precedence

9>1>..\..\..\CIP\Common\vtkComputeAirwayWallPolyData.cxx(593) : warning C4101: 'mean' : unreferenced local variable

9>1>..\..\..\CIP\Common\vtkComputeAirwayWallPolyData.cxx(702) : warning C4101: 'rx' : unreferenced local variable

9>1>..\..\..\CIP\Common\vtkComputeAirwayWallPolyData.cxx(702) : warning C4101: 'ry' : unreferenced local variable

9>1>vtkComputeAirwayWall.cxx

9>1>..\..\..\CIP\Common\vtkComputeAirwayWall.cxx(1492) : warning C4554: '&' : check operator precedence for possible error; use parentheses to clarify precedence

9>1>Generating Code...
9>1>Creating library...
9>1>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\Common\CIPCommon.dir\Release\BuildLog.htm"
9>1>CIPCommon - 0 error(s), 5 warning(s)
9>3>------ Build started: Project: CIPIO, Configuration: Release x64 ------
9>4>------ Build started: Project: cipHelperTEST, Configuration: Release x64 ------
9>4>Performing Pre-Link Event...
9>3>Compiling...
9>4>Linking...
9>3>cipGeometryTopologyDataIO.cxx

9>6>Embedding manifest...
9>6>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\Common\Testing\itkCIPExtractChestLabelMapImageFilterTEST.dir\Release\BuildLog.htm"
9>6>itkCIPExtractChestLabelMapImageFilterTEST - 0 error(s), 0 warning(s)
9>7>------ Build started: Project: itkCIPMergeChestLabelMapsImageFilterTEST, Configuration: Release x64 ------
9>7>Performing Pre-Link Event...
9>7>Linking...
9>7>   Creating library C:\Projects\CIP-build\lib\Release\itkCIPMergeChestLabelMapsImageFilterTEST.lib and object C:\Projects\CIP-build\lib\Release\itkCIPMergeChestLabelMapsImageFilterTEST.exp
9>7>Embedding manifest...
9>7>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\Common\Testing\itkCIPMergeChestLabelMapsImageFilterTEST.dir\Release\BuildLog.htm"
9>7>itkCIPMergeChestLabelMapsImageFilterTEST - 0 error(s), 0 warning(s)

9>3>C:\Projects\CIP\Common\cipGeometryTopologyData.h(44) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>3>C:\Projects\CIP\Common\cipGeometryTopologyData.h(86) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>3>..\..\..\CIP\IO\cipGeometryTopologyDataIO.cxx(198) : warning C4244: 'argument' : conversion from 'double' to 'const float', possible loss of data

9>3>..\..\..\CIP\IO\cipGeometryTopologyDataIO.cxx(240) : warning C4244: 'argument' : conversion from 'double' to 'const float', possible loss of data

9>3>..\..\..\CIP\IO\cipGeometryTopologyDataIO.cxx(252) : warning C4244: 'argument' : conversion from 'double' to 'const float', possible loss of data

9>3>Creating library...
9>3>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\IO\CIPIO.dir\Release\BuildLog.htm"
9>3>CIPIO - 0 error(s), 5 warning(s)
9>8>------ Build started: Project: RegisterLabelMapsLib, Configuration: Release x64 ------
9>8>Compiling...
9>9>------ Build started: Project: RegisterCTLib, Configuration: Release x64 ------
9>9>Compiling...
9>8>RegisterLabelMaps.cxx
9>9>RegisterCT.cxx
9>8>Creating library...

9>11>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\GetTransformationKappa\GetTransformationKappaLib.dir\Release\BuildLog.htm"
9>11>GetTransformationKappaLib - 0 error(s), 0 warning(s)
9>13>------ Build started: Project: ComputeAirwayWallFromParticlesLib, Configuration: Release x64 ------
9>13>Generating ComputeAirwayWallFromParticlesCLP.h
9>13>GenerateCLP --InputXML /.../CIP/CommandLineTools/ComputeAirwayWallFromParticles/ComputeAirwayWallFromParticles.xml --OutputCxx /.../CIP-build/CIP-build/CommandLineTools/ComputeAirwayWallFromParticles/ComputeAirwayWallFromParticlesCLP.h
9>13>GenerateCLP: Found 2 parameters groups
9>13>GenerateCLP: Group "IO" has 3 parameters
9>13>GenerateCLP: Group "Parameters" has 10 parameters
9>13>Compiling...
9>13>ComputeAirwayWallFromParticles.cxx

9>13>..\..\..\..\CIP\CommandLineTools\ComputeAirwayWallFromParticles\ComputeAirwayWallFromParticles.cxx(17) : warning C4267: 'argument' : conversion from 'size_t' to 'int', possible loss of data

9>13>Creating library...
9>13>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\ComputeAirwayWallFromParticles\ComputeAirwayWallFromParticlesLib.dir\Release\BuildLog.htm"
9>13>ComputeAirwayWallFromParticlesLib - 0 error(s), 1 warning(s)
9>14>------ Build started: Project: PerformMorphological, Configuration: Release x64 ------
9>14>Linking...
9>14>   Creating library C:\Projects\CIP-build\CIP-build\bin\Release\PerformMorphological.lib and object C:\Projects\CIP-build\CIP-build\bin\Release\PerformMorphological.exp
9>14>Embedding manifest...
9>14>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\PerformMorphological\PerformMorphological.dir\Release\BuildLog.htm"
9>14>PerformMorphological - 0 error(s), 0 warning(s)
9>15>------ Build started: Project: PerturbParticles, Configuration: Release x64 ------

9>131>------ Build started: Project: ClassifyFissureParticles, Configuration: Release x64 ------
9>131>Linking...
9>131>   Creating library C:\Projects\CIP-build\CIP-build\bin\Release\ClassifyFissureParticles.lib and object C:\Projects\CIP-build\CIP-build\bin\Release\ClassifyFissureParticles.exp
9>131>Embedding manifest...
9>131>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\ClassifyFissureParticles\ClassifyFissureParticles.dir\Release\BuildLog.htm"
9>131>ClassifyFissureParticles - 0 error(s), 0 warning(s)
9>132>------ Build started: Project: ComputeIntensityStatisticsTest, Configuration: Release x64 ------
9>132>Performing Pre-Link Event...
9>132>Linking...
9>132>   Creating library C:\Projects\CIP-build\lib\Release\ComputeIntensityStatisticsTest.lib and object C:\Projects\CIP-build\lib\Release\ComputeIntensityStatisticsTest.exp

9>129>C:\Projects\CIP\Common\cipGeometryTopologyData.h(44) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>129>C:\Projects\CIP\Common\cipGeometryTopologyData.h(86) : warning C4267: 'return' : conversion from 'size_t' to 'unsigned int', possible loss of data

9>132>Embedding manifest...

9>129>..\..\..\..\CIP\IO\Testing\cipGeometryTopologyDataIOTEST.cxx(11) : warning C4305: '=' : truncation from 'double' to 'float'

9>132>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\CommandLineTools\ComputeIntensityStatistics\ComputeIntensityStatisticsTest.dir\Release\BuildLog.htm"
9>132>ComputeIntensityStatisticsTest - 0 error(s), 0 warning(s)
9>129>Performing Pre-Link Event...
9>129>Linking...
9>129>Embedding manifest...
9>129>Build log was saved at "file://c:\Projects\CIP-build\CIP-build\IO\Testing\cipGeometryTopologyDataIOTEST.dir\Release\BuildLog.htm"
9>129>cipGeometryTopologyDataIOTEST - 0 error(s), 3 warning(s)
9>133>------ Build started: Project: ComputeIntensityStatistics, Configuration: Release x64 ------
9>133>Linking...
9>133>   Creating library C:\Projects\CIP-build\CIP-build\bin\Release\ComputeIntensityStatistics.lib and object C:\Projects\CIP-build\CIP-build\bin\Release\ComputeIntensityStatistics.exp

*** WARNING non-zero return value in ctest from: C:\Program Files (x86)\CMake\bin\cmake.exe

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