Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20211023-0400-Nightly (related builds)
Time: 2021-10-23T00:34:21 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
CTest version: ctest-3.9.0

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Stage: Update (0 errors, 0 warnings)

Start Time: 2021-10-23T00:33:59 EDT
End Time: 2021-10-23T00:34:01 EDT
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2021-10-23T00:34:01 EDT
End Time: 2021-10-23T00:34:19 EDT
Configure Command: /home/ec2-user/sw/cmake-3.9.0-Linux-x86_64/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output:
--  - C++11
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ExampleCLI
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ComputeAirwayWallFromImages
-- Configuring SEM CLI module: FitBSplineToDeformationField
-- Configuring SEM CLI module: CreateVolumeFromSlices
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: UpdateParticlesData
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python2.7 and flags   -fPIC  -Wno-array-bounds -msse2 
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_example.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/example_pythonCLI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram_emphysema.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramModel.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramMapper.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/data_operator.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/uniform_similarity_3D_transform_with_coords_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/flipping_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/gaussian_noise_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/perspective_skew_2D_transform_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/shear_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/uniform_affine_2D_transform_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/invert_intensities_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/transpose_2d_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/elastic_2D_transform_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/shifting_3D_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/rotation_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/shifting_2D_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/volume_file.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/concat_full_h5s.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/concat_h5_datasets.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/h5_dataset_store.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/data_processing.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/h5_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/data_augmentor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/network.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/utils.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/metrics_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/deep_learning_models_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/engine.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/baseline
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/test_lung_segmentation_dcnn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/lung_segmenter_dcnn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/low_to_high_dose_engine.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/low_to_high_dose_filter_dcnn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks/low_to_high_dose_metrics_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/networks/low_to_high_dose_network.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/low_to_high_dose_filter/tests/test_low_to_high_dose_filter_dcnn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/av_segmentation_dataset_generator.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/BashScripts
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_engine.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_generator.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_neural_network.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/airway_flow_run_training_testing.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/utils
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/utils/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/example/dcnn_airway_flow/utils/custom_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/fissure_phenotypes_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/transfer_particles_region_type_values.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_vasculature_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_fissure_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/PhenotypesProgression.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/fractal_dimension_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/biomechanical_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/fissure_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes_progression.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/ct_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/ct_registration_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/lung_segmentation_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/qc_base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/body_composition_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/bronchial_tree_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/vasculature_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/xml_points_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/airway_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/tests
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/anterior_vs_posterior_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/rind_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/lung_splitter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/setup.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/merge_particle_files.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/convert_labelmap_to_int.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/biomechanical_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/extract_2D_patches_from_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/vtk_not_empty.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/isotropic_dicom_converter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/iodine_map_dicom_converter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/monogenic_signal_2D.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/weighted_average_dual_energy_image.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/median_filtering.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/labelmap_resample_to_reference.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/dicom_series_sorter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline/crop_ct_2slices.nrrd
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (50 errors, 5 warnings)

Build command: /home/ec2-user/sw/cmake-3.9.0-Linux-x86_64/bin/cmake --build . --config "Release" -- -i
Start Time: 2021-10-23T00:34:21 EDT
End Time: 2021-10-23T00:37:33 EDT


Build Log line 1065


File: Utilities/GraphCutsOptimization/maxflow.cpp Line: 366
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:30: error: ‘nullptr’ was not declared in this scope
  if ((i->parent = a0_min) != nullptr)
                              ^
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::process_sink_orphan(Graph<captype, tcaptype, flowtype>::node*)’:

Build Log line 1069


File: Utilities/GraphCutsOptimization/maxflow.cpp Line: 443
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:30: error: ‘nullptr’ was not declared in this scope
  if ((i->parent = a0_min) != nullptr)
                              ^
error: command '/usr/bin/cc' failed with exit status 1
[ 10%] Built target CIP_PYTHON
[ 11%] Linking CXX executable cipNelderMeadSimplexOptimizerTEST
[ 11%] Built target cipNelderMeadSimplexOptimizerTEST
[ 11%] Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Built target itkCIPExtractChestLabelMapImageFilterTEST
[ 11%] Linking CXX executable cipHelperTEST
[ 12%] Built target cipHelperTEST

Build Log line 1096


File: CommandLineTools/Testing/itkTestMain.h Line: 41
[ 13%] Linking CXX executable cipLobeSurfaceModelIOTEST
[ 13%] Built target cipLobeSurfaceModelIOTEST
[ 13%] Linking CXX executable cipGeometryTopologyDataIOTEST
[ 13%] Built target cipGeometryTopologyDataIOTEST
[ 14%] Built target ExampleCLILib
[ 14%] Linking CXX executable ../../bin/ExampleCLI
Copying XML file 'ExampleCLI.xml' along side the executable
[ 14%] Built target ExampleCLI
[ 14%] Building CXX object CommandLineTools/ExampleCLI/CMakeFiles/ExampleCLITest.dir/Testing/ExampleCLITest.cxx.o
In file included from /.../CIP/CommandLineTools/ExampleCLI/Testing/ExampleCLITest.cxx:1:0:
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 14%] Linking CXX executable ../Testing/bin/ExampleCLITest
c++: error: CMakeFiles/ExampleCLITest.dir/Testing/ExampleCLITest.cxx.o: No such file or directory
[ 14%] Built target ExampleCLITest
[ 14%] Built target ConvertDicomLib
[ 14%] Linking CXX executable ../../bin/ConvertDicom
Copying XML file 'ConvertDicom.xml' along side the executable
[ 15%] Built target ConvertDicom
[ 15%] Building CXX object CommandLineTools/ConvertDicom/CMakeFiles/ConvertDicomTest.dir/Testing/ConvertDicomTest.cxx.o
In file included from /.../CIP/CommandLineTools/ConvertDicom/Testing/ConvertDicomTest.cxx:1:0:

Build Log line 1109


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 15%] Linking CXX executable ../Testing/bin/ConvertDicomTest
c++: error: CMakeFiles/ConvertDicomTest.dir/Testing/ConvertDicomTest.cxx.o: No such file or directory
[ 15%] Built target ConvertDicomTest
[ 16%] Built target MergeParticleDataSetsLib
[ 16%] Linking CXX executable ../../bin/MergeParticleDataSets
Copying XML file 'MergeParticleDataSets.xml' along side the executable
[ 16%] Built target MergeParticleDataSets
[ 16%] Building CXX object CommandLineTools/MergeParticleDataSets/CMakeFiles/MergeParticleDataSetsTest.dir/Testing/MergeParticleDataSetsTest.cxx.o
In file included from /.../CIP/CommandLineTools/MergeParticleDataSets/Testing/MergeParticleDataSetsTest.cxx:1:0:

Build Log line 1122


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 16%] Linking CXX executable ../Testing/bin/MergeParticleDataSetsTest
c++: error: CMakeFiles/MergeParticleDataSetsTest.dir/Testing/MergeParticleDataSetsTest.cxx.o: No such file or directory
[ 16%] Built target MergeParticleDataSetsTest
[ 17%] Built target RemoveParticlesFromParticlesDataSetLib
[ 17%] Linking CXX executable ../../bin/RemoveParticlesFromParticlesDataSet
Copying XML file 'RemoveParticlesFromParticlesDataSet.xml' along side the executable
[ 17%] Built target RemoveParticlesFromParticlesDataSet
[ 17%] Building CXX object CommandLineTools/RemoveParticlesFromParticlesDataSet/CMakeFiles/RemoveParticlesFromParticlesDataSetTest.dir/Testing/RemoveParticlesFromParticlesDataSetTest.cxx.o
In file included from /.../CIP/CommandLineTools/RemoveParticlesFromParticlesDataSet/Testing/RemoveParticlesFromParticlesDataSetTest.cxx:1:0:

Build Log line 1135


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 17%] Linking CXX executable ../Testing/bin/RemoveParticlesFromParticlesDataSetTest
c++: error: CMakeFiles/RemoveParticlesFromParticlesDataSetTest.dir/Testing/RemoveParticlesFromParticlesDataSetTest.cxx.o: No such file or directory
[ 17%] Built target RemoveParticlesFromParticlesDataSetTest
[ 18%] Built target ExtractParticlesFromChestRegionChestTypeLib
[ 18%] Building CXX object CommandLineTools/ExtractParticlesFromChestRegionChestType/CMakeFiles/ExtractParticlesFromChestRegionChestTypeTest.dir/Testing/ExtractParticlesFromChestRegionChestTypeTest.cxx.o
In file included from /.../CIP/CommandLineTools/ExtractParticlesFromChestRegionChestType/Testing/ExtractParticlesFromChestRegionChestTypeTest.cxx:1:0:

Build Log line 1145


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 18%] Linking CXX executable ../Testing/bin/ExtractParticlesFromChestRegionChestTypeTest
c++: error: CMakeFiles/ExtractParticlesFromChestRegionChestTypeTest.dir/Testing/ExtractParticlesFromChestRegionChestTypeTest.cxx.o: No such file or directory
[ 18%] Built target ExtractParticlesFromChestRegionChestTypeTest
[ 18%] Linking CXX executable ../../bin/ExtractParticlesFromChestRegionChestType
Copying XML file 'ExtractParticlesFromChestRegionChestType.xml' along side the executable
[ 18%] Built target ExtractParticlesFromChestRegionChestType
[ 19%] Built target GenerateOtsuLungCastLib
[ 19%] Linking CXX executable ../../bin/GenerateOtsuLungCast
Copying XML file 'GenerateOtsuLungCast.xml' along side the executable
[ 19%] Built target GenerateOtsuLungCast
[ 19%] Building CXX object CommandLineTools/GenerateOtsuLungCast/CMakeFiles/GenerateOtsuLungCastTest.dir/Testing/GenerateOtsuLungCastTest.cxx.o
In file included from /.../CIP/CommandLineTools/GenerateOtsuLungCast/Testing/GenerateOtsuLungCastTest.cxx:1:0:

Build Log line 1161


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 19%] Linking CXX executable ../Testing/bin/GenerateOtsuLungCastTest
c++: error: CMakeFiles/GenerateOtsuLungCastTest.dir/Testing/GenerateOtsuLungCastTest.cxx.o: No such file or directory
[ 19%] Built target GenerateOtsuLungCastTest
[ 20%] Built target GenerateAtlasConvexHullLib
[ 20%] Linking CXX executable ../../bin/GenerateAtlasConvexHull
Copying XML file 'GenerateAtlasConvexHull.xml' along side the executable
[ 20%] Built target GenerateAtlasConvexHull
[ 20%] Building CXX object CommandLineTools/GenerateAtlasConvexHull/CMakeFiles/GenerateAtlasConvexHullTest.dir/Testing/GenerateAtlasConvexHullTest.cxx.o
In file included from /.../CIP/CommandLineTools/GenerateAtlasConvexHull/Testing/GenerateAtlasConvexHullTest.cxx:1:0:

Build Log line 1174


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 20%] Linking CXX executable ../Testing/bin/GenerateAtlasConvexHullTest
c++: error: CMakeFiles/GenerateAtlasConvexHullTest.dir/Testing/GenerateAtlasConvexHullTest.cxx.o: No such file or directory
[ 20%] Built target GenerateAtlasConvexHullTest
[ 21%] Built target RegisterLungAtlasLib
[ 21%] Building CXX object CommandLineTools/RegisterLungAtlas/CMakeFiles/RegisterLungAtlasTest.dir/Testing/RegisterLungAtlasTest.cxx.o
In file included from /.../CIP/CommandLineTools/RegisterLungAtlas/Testing/RegisterLungAtlasTest.cxx:1:0:

Build Log line 1184


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 21%] Linking CXX executable ../Testing/bin/RegisterLungAtlasTest
c++: error: CMakeFiles/RegisterLungAtlasTest.dir/Testing/RegisterLungAtlasTest.cxx.o: No such file or directory
[ 21%] Built target RegisterLungAtlasTest
[ 21%] Linking CXX executable ../../bin/RegisterLungAtlas
Copying XML file 'RegisterLungAtlas.xml' along side the executable
[ 21%] Built target RegisterLungAtlas
[ 21%] Built target ResampleLabelMapLib
[ 22%] Linking CXX executable ../../bin/ResampleLabelMap
Copying XML file 'ResampleLabelMap.xml' along side the executable
[ 22%] Built target ResampleLabelMap
[ 22%] Building CXX object CommandLineTools/ResampleLabelMap/CMakeFiles/ResampleLabelMapTest.dir/Testing/ResampleLabelMapTest.cxx.o
In file included from /.../CIP/CommandLineTools/ResampleLabelMap/Testing/ResampleLabelMapTest.cxx:1:0:

Build Log line 1200


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 22%] Linking CXX executable ../Testing/bin/ResampleLabelMapTest
c++: error: CMakeFiles/ResampleLabelMapTest.dir/Testing/ResampleLabelMapTest.cxx.o: No such file or directory
[ 22%] Built target ResampleLabelMapTest
[ 22%] Built target RescaleLabelMapLib
[ 23%] Linking CXX executable ../../bin/RescaleLabelMap
Copying XML file 'RescaleLabelMap.xml' along side the executable
[ 23%] Built target RescaleLabelMap
[ 23%] Building CXX object CommandLineTools/RescaleLabelMap/CMakeFiles/RescaleLabelMapTest.dir/Testing/RescaleLabelMapTest.cxx.o
In file included from /.../CIP/CommandLineTools/RescaleLabelMap/Testing/RescaleLabelMapTest.cxx:1:0:

Build Log line 1213


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 23%] Linking CXX executable ../Testing/bin/RescaleLabelMapTest
c++: error: CMakeFiles/RescaleLabelMapTest.dir/Testing/RescaleLabelMapTest.cxx.o: No such file or directory
[ 23%] Built target RescaleLabelMapTest
[ 24%] Built target ResampleCTLib
[ 24%] Linking CXX executable ../../bin/ResampleCT
Copying XML file 'ResampleCT.xml' along side the executable
[ 24%] Built target ResampleCT
[ 24%] Building CXX object CommandLineTools/ResampleCT/CMakeFiles/ResampleCTTest.dir/Testing/ResampleCTTest.cxx.o
In file included from /.../CIP/CommandLineTools/ResampleCT/Testing/ResampleCTTest.cxx:1:0:

Build Log line 1226


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 24%] Linking CXX executable ../Testing/bin/ResampleCTTest
c++: error: CMakeFiles/ResampleCTTest.dir/Testing/ResampleCTTest.cxx.o: No such file or directory
[ 24%] Built target ResampleCTTest
[ 25%] Built target QualityControlLib
[ 25%] Linking CXX executable ../../bin/QualityControl
Copying XML file 'QualityControl.xml' along side the executable
[ 25%] Built target QualityControl
[ 25%] Building CXX object CommandLineTools/QualityControl/CMakeFiles/QualityControlTest.dir/Testing/QualityControlTest.cxx.o
In file included from /.../CIP/CommandLineTools/QualityControl/Testing/QualityControlTest.cxx:1:0:

Build Log line 1239


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 25%] Linking CXX executable ../Testing/bin/QualityControlTest
c++: error: CMakeFiles/QualityControlTest.dir/Testing/QualityControlTest.cxx.o: No such file or directory
[ 25%] Built target QualityControlTest
[ 26%] Built target RemoveChestTypeFromLabelMapUsingParticlesLib
[ 26%] Building CXX object CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/CMakeFiles/RemoveChestTypeFromLabelMapUsingParticlesTest.dir/Testing/RemoveChestTypeFromLabelMapUsingParticlesTest.cxx.o
In file included from /.../CIP/CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/Testing/RemoveChestTypeFromLabelMapUsingParticlesTest.cxx:1:0:

Build Log line 1249


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 26%] Linking CXX executable ../Testing/bin/RemoveChestTypeFromLabelMapUsingParticlesTest
c++: error: CMakeFiles/RemoveChestTypeFromLabelMapUsingParticlesTest.dir/Testing/RemoveChestTypeFromLabelMapUsingParticlesTest.cxx.o: No such file or directory
[ 26%] Built target RemoveChestTypeFromLabelMapUsingParticlesTest
[ 26%] Linking CXX executable ../../bin/RemoveChestTypeFromLabelMapUsingParticles
Copying XML file 'RemoveChestTypeFromLabelMapUsingParticles.xml' along side the executable
[ 26%] Built target RemoveChestTypeFromLabelMapUsingParticles
[ 26%] Built target SegmentLungLobesLib
[ 26%] Linking CXX executable ../../bin/SegmentLungLobes
Copying XML file 'SegmentLungLobes.xml' along side the executable
[ 27%] Built target SegmentLungLobes
[ 27%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
In file included from /.../CIP/CommandLineTools/SegmentLungLobes/Testing/SegmentLungLobesTest.cxx:1:0:

Build Log line 1265


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 27%] Linking CXX executable ../Testing/bin/SegmentLungLobesTest
c++: error: CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o: No such file or directory
[ 27%] Built target SegmentLungLobesTest
[ 27%] Built target ReadDicomWriteTagsLib
[ 28%] Linking CXX executable ../../bin/ReadDicomWriteTags
Copying XML file 'ReadDicomWriteTags.xml' along side the executable
[ 28%] Built target ReadDicomWriteTags
[ 28%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsTest.dir/Testing/ReadDicomWriteTagsTest.cxx.o
In file included from /.../CIP/CommandLineTools/ReadDicomWriteTags/Testing/ReadDicomWriteTagsTest.cxx:1:0:

Build Log line 1278


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 28%] Linking CXX executable ../Testing/bin/ReadDicomWriteTagsTest
c++: error: CMakeFiles/ReadDicomWriteTagsTest.dir/Testing/ReadDicomWriteTagsTest.cxx.o: No such file or directory
[ 28%] Built target ReadDicomWriteTagsTest
[ 28%] Built target SplitLeftLungRightLungLib
[ 28%] Linking CXX executable ../../bin/SplitLeftLungRightLung
Copying XML file 'SplitLeftLungRightLung.xml' along side the executable
[ 29%] Built target SplitLeftLungRightLung
[ 29%] Building CXX object CommandLineTools/SplitLeftLungRightLung/CMakeFiles/SplitLeftLungRightLungTest.dir/Testing/SplitLeftLungRightLungTest.cxx.o
In file included from /.../CIP/CommandLineTools/SplitLeftLungRightLung/Testing/SplitLeftLungRightLungTest.cxx:1:0:

Build Log line 1291


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 30%] Linking CXX executable ../Testing/bin/SplitLeftLungRightLungTest
c++: error: CMakeFiles/SplitLeftLungRightLungTest.dir/Testing/SplitLeftLungRightLungTest.cxx.o: No such file or directory
[ 30%] Built target SplitLeftLungRightLungTest
[ 31%] Built target ExtractChestLabelMapLib
[ 31%] Linking CXX executable ../../bin/ExtractChestLabelMap
Copying XML file 'ExtractChestLabelMap.xml' along side the executable
[ 31%] Built target ExtractChestLabelMap
[ 31%] Building CXX object CommandLineTools/ExtractChestLabelMap/CMakeFiles/ExtractChestLabelMapTest.dir/Testing/ExtractChestLabelMapTest.cxx.o
In file included from /.../CIP/CommandLineTools/ExtractChestLabelMap/Testing/ExtractChestLabelMapTest.cxx:1:0:

Build Log line 1304


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 31%] Linking CXX executable ../Testing/bin/ExtractChestLabelMapTest
c++: error: CMakeFiles/ExtractChestLabelMapTest.dir/Testing/ExtractChestLabelMapTest.cxx.o: No such file or directory
[ 31%] Built target ExtractChestLabelMapTest
[ 32%] Built target LabelParticlesByChestRegionChestTypeLib
[ 32%] Building CXX object CommandLineTools/LabelParticlesByChestRegionChestType/CMakeFiles/LabelParticlesByChestRegionChestTypeTest.dir/Testing/LabelParticlesByChestRegionChestTypeTest.cxx.o
In file included from /.../CIP/CommandLineTools/LabelParticlesByChestRegionChestType/Testing/LabelParticlesByChestRegionChestTypeTest.cxx:1:0:

Build Log line 1314


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 32%] Linking CXX executable ../Testing/bin/LabelParticlesByChestRegionChestTypeTest
c++: error: CMakeFiles/LabelParticlesByChestRegionChestTypeTest.dir/Testing/LabelParticlesByChestRegionChestTypeTest.cxx.o: No such file or directory
[ 32%] Built target LabelParticlesByChestRegionChestTypeTest
[ 32%] Linking CXX executable ../../bin/LabelParticlesByChestRegionChestType
Copying XML file 'LabelParticlesByChestRegionChestType.xml' along side the executable
[ 32%] Built target LabelParticlesByChestRegionChestType
[ 32%] Built target GenerateStenciledLabelMapFromParticlesLib
[ 33%] Linking CXX executable ../../bin/GenerateStenciledLabelMapFromParticles
Copying XML file 'GenerateStenciledLabelMapFromParticles.xml' along side the executable
[ 33%] Built target GenerateStenciledLabelMapFromParticles
[ 33%] Building CXX object CommandLineTools/GenerateStenciledLabelMapFromParticles/CMakeFiles/GenerateStenciledLabelMapFromParticlesTest.dir/Testing/GenerateStenciledLabelMapFromParticlesTest.cxx.o
In file included from /.../CIP/CommandLineTools/GenerateStenciledLabelMapFromParticles/Testing/GenerateStenciledLabelMapFromParticlesTest.cxx:1:0:

Build Log line 1330


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 33%] Linking CXX executable ../Testing/bin/GenerateStenciledLabelMapFromParticlesTest
c++: error: CMakeFiles/GenerateStenciledLabelMapFromParticlesTest.dir/Testing/GenerateStenciledLabelMapFromParticlesTest.cxx.o: No such file or directory
[ 33%] Built target GenerateStenciledLabelMapFromParticlesTest
[ 34%] Built target GenerateDistanceMapFromLabelMapLib
[ 34%] Linking CXX executable ../../bin/GenerateDistanceMapFromLabelMap
Copying XML file 'GenerateDistanceMapFromLabelMap.xml' along side the executable
[ 34%] Built target GenerateDistanceMapFromLabelMap
[ 34%] Building CXX object CommandLineTools/GenerateDistanceMapFromLabelMap/CMakeFiles/GenerateDistanceMapFromLabelMapTest.dir/Testing/GenerateDistanceMapFromLabelMapTest.cxx.o
In file included from /.../CIP/CommandLineTools/GenerateDistanceMapFromLabelMap/Testing/GenerateDistanceMapFromLabelMapTest.cxx:1:0:

Build Log line 1343


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 34%] Linking CXX executable ../Testing/bin/GenerateDistanceMapFromLabelMapTest
c++: error: CMakeFiles/GenerateDistanceMapFromLabelMapTest.dir/Testing/GenerateDistanceMapFromLabelMapTest.cxx.o: No such file or directory
[ 34%] Built target GenerateDistanceMapFromLabelMapTest
[ 34%] Built target FilterVesselParticleDataLib
[ 34%] Linking CXX executable ../../bin/FilterVesselParticleData
Copying XML file 'FilterVesselParticleData.xml' along side the executable
[ 34%] Built target FilterVesselParticleData
[ 35%] Building CXX object CommandLineTools/FilterVesselParticleData/CMakeFiles/FilterVesselParticleDataTest.dir/Testing/FilterVesselParticleDataTest.cxx.o
In file included from /.../CIP/CommandLineTools/FilterVesselParticleData/Testing/FilterVesselParticleDataTest.cxx:1:0:

Build Log line 1356


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 35%] Linking CXX executable ../Testing/bin/FilterVesselParticleDataTest
c++: error: CMakeFiles/FilterVesselParticleDataTest.dir/Testing/FilterVesselParticleDataTest.cxx.o: No such file or directory
[ 35%] Built target FilterVesselParticleDataTest
[ 36%] Built target FilterAirwayParticleDataLib
[ 36%] Linking CXX executable ../../bin/FilterAirwayParticleData
Copying XML file 'FilterAirwayParticleData.xml' along side the executable
[ 36%] Built target FilterAirwayParticleData
[ 36%] Building CXX object CommandLineTools/FilterAirwayParticleData/CMakeFiles/FilterAirwayParticleDataTest.dir/Testing/FilterAirwayParticleDataTest.cxx.o
In file included from /.../CIP/CommandLineTools/FilterAirwayParticleData/Testing/FilterAirwayParticleDataTest.cxx:1:0:

Build Log line 1369


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 36%] Linking CXX executable ../Testing/bin/FilterAirwayParticleDataTest
c++: error: CMakeFiles/FilterAirwayParticleDataTest.dir/Testing/FilterAirwayParticleDataTest.cxx.o: No such file or directory
[ 36%] Built target FilterAirwayParticleDataTest
[ 36%] Built target ReadNRRDsWriteVTKLib
[ 37%] Linking CXX executable ../../bin/ReadNRRDsWriteVTK
Copying XML file 'ReadNRRDsWriteVTK.xml' along side the executable
[ 37%] Built target ReadNRRDsWriteVTK
[ 37%] Building CXX object CommandLineTools/ReadNRRDsWriteVTK/CMakeFiles/ReadNRRDsWriteVTKTest.dir/Testing/ReadNRRDsWriteVTKTest.cxx.o
In file included from /.../CIP/CommandLineTools/ReadNRRDsWriteVTK/Testing/ReadNRRDsWriteVTKTest.cxx:1:0:

Build Log line 1382


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 37%] Linking CXX executable ../Testing/bin/ReadNRRDsWriteVTKTest
c++: error: CMakeFiles/ReadNRRDsWriteVTKTest.dir/Testing/ReadNRRDsWriteVTKTest.cxx.o: No such file or directory
[ 37%] Built target ReadNRRDsWriteVTKTest
[ 37%] Built target ReadVTKWriteNRRDsLib
[ 37%] Linking CXX executable ../../bin/ReadVTKWriteNRRDs
Copying XML file 'ReadVTKWriteNRRDs.xml' along side the executable
[ 38%] Built target ReadVTKWriteNRRDs
[ 38%] Building CXX object CommandLineTools/ReadVTKWriteNRRDs/CMakeFiles/ReadVTKWriteNRRDsTest.dir/Testing/ReadVTKWriteNRRDsTest.cxx.o
In file included from /.../CIP/CommandLineTools/ReadVTKWriteNRRDs/Testing/ReadVTKWriteNRRDsTest.cxx:1:0:

Build Log line 1395


File: CommandLineTools/Testing/itkTestMain.h Line: 41
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
compilation terminated.
[ 38%] Linking CXX executable ../Testing/bin/ReadVTKWriteNRRDsTest
c++: error: CMakeFiles/ReadVTKWriteNRRDsTest.dir/Testing/ReadVTKWriteNRRDsTest.cxx.o: No such file or directory
[ 38%] Built target ReadVTKWriteNRRDsTest
[ 39%] Built target ComputeCrossSectionalAreaLib
[ 39%] Linking CXX executable ../../bin/ComputeCrossSectionalArea
Copying XML file 'ComputeCrossSectionalArea.xml' along side the executable
[ 39%] Built target ComputeCrossSectionalArea
[ 39%] Building CXX object CommandLineTools/ComputeCrossSectionalArea/CMakeFiles/ComputeCrossSectionalAreaTest.dir/Testing/ComputeCrossSectionalAreaTest.cxx.o
In file included from /.../CIP/CommandLineTools/ComputeCrossSectionalArea/Testing/ComputeCrossSectionalAreaTest.cxx:1:0:
/.../CIP/CommandLineTools/Testing/itkTestMain.h:41:34: fatal error: itkMultiThreaderBase.h: No such file or directory
 #include "itkMultiThreaderBase.h"
                                  ^
The maximum number of reported warnings or errors has been reached!!!
View Errors Summary

Build Warnings (5)
-- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue.
-- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled MGHIO, requested by Module_MGHIO.
-- Performing Test ITK_PRIVATE_DYNAMIC_CAST - Success
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") 
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a  
-- Filter ZLIB is ON
CMake Warning (dev) at Modules/Remote/MGHIO/CMakeLists.txt:2 (project):
  Policy CMP0048 is not set: project() command manages VERSION variables.
  Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The following variable(s) would be set to empty:

    PROJECT_VERSION
    PROJECT_VERSION_MAJOR
    PROJECT_VERSION_MINOR
    PROJECT_VERSION_PATCH
[100%] Built target ITKVtkGlue-all
[100%] Built target MGHIO
[100%] Built target MGHIO-all
[ 43%] No install step for 'ITKv4'
[ 44%] Completed 'ITKv4'
[ 49%] Built target ITKv4
[ 50%] Performing update step for 'teem'
[ 52%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake
-- Configuring done
CMake Warning (dev) at CMakeLists.txt:555 (install):
  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the
[  0%] Built target copy-external-files
[  0%] Built target copy-input-files
[  2%] Built target CIPUtilities
[  2%] Built target generateChestConventions
[  9%] Built target CIPCommon
[ 10%] Built target CIPIO
running build_ext
skipping '/.../CIP/cip_python/utils/gco_python/gco_python.cpp' Cython extension (up-to-date)
building 'pygco' extension
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/cip_python/utils/gco_python/gco_python.cpp -o build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /.../CIP/cip_python/utils/gco_python/gco_python.cpp:449:

Build Log line 1056


File: CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h Line: 17
/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:111:0,
                 from /.../CIP/cip_python/utils/gco_python/gco_python.cpp:451:

Build Log line 1061


File: Utilities/GraphCutsOptimization/maxflow.cpp Line: 366
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:2: warning: identifier ‘nullptr’ is a keyword in C++11 [-Wc++0x-compat]
  if ((i->parent = a0_min) != nullptr)
  ^
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::process_source_orphan(Graph<captype, tcaptype, flowtype>::node*)’:

View Warnings Summary

Test (95 passed, 2 failed, 0 not run)
View Tests Summary