/.../CIP/Common/cipChestConventions.cxx:734:13: error: expected ';' after expression
SPINALCORD, //68
^
;
ar: CMakeFiles/ChestConventions.dir/cipChestConventions.cxx.o: No such file or directory
[ 15%] Built target ChestConventions
[ 16%] Built target CIPIO
running build_ext
skipping '/.../CIP/cip_python/wrap_ChestConventions.cpp' Cython extension (up-to-date)
[ 16%] Built target CIP_PYTHON
Linking CXX executable cipHelperTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 16%] Built target cipHelperTEST
Linking CXX executable cipLobeSurfaceModelTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 17%] Built target cipLobeSurfaceModelTEST
Linking CXX executable cipNelderMeadSimplexOptimizerTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: unable to execute command: Segmentation fault: 11
clang: error: linker command failed due to signal (use -v to see invocation)
[ 17%] Built target cipNelderMeadSimplexOptimizerTEST
Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 17%] Built target itkCIPExtractChestLabelMapImageFilterTEST
Linking CXX executable itkCIPMergeChestLabelMapsImageFilterTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 18%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
Linking CXX executable cipChestRegionChestTypeLocationsIOTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 18%] Built target cipChestRegionChestTypeLocationsIOTEST
Linking CXX executable cipGeometryTopologyDataIOTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 19%] Built target cipGeometryTopologyDataIOTEST
Linking CXX executable cipLobeSurfaceModelIOTEST
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: unable to execute command: Segmentation fault: 11
clang: error: linker command failed due to signal (use -v to see invocation)
[ 19%] Built target cipLobeSurfaceModelIOTEST
[ 19%] Built target ConvertDicomLib
Linking CXX executable ../../bin/ConvertDicom
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: unable to execute command: Segmentation fault: 11
clang: error: linker command failed due to signal (use -v to see invocation)
[ 20%] Built target ConvertDicom
Linking CXX executable ../Testing/bin/ConvertDicomTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 21%] Built target ConvertDicomTest
[ 21%] Built target MergeParticleDataSetsLib
Linking CXX executable ../../bin/MergeParticleDataSets
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 21%] Built target MergeParticleDataSets
Linking CXX executable ../Testing/bin/MergeParticleDataSetsTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 22%] Built target MergeParticleDataSetsTest
[ 22%] Built target RemoveParticlesFromParticlesDataSetLib
Linking CXX executable ../../bin/RemoveParticlesFromParticlesDataSet
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 23%] Built target RemoveParticlesFromParticlesDataSet
Linking CXX executable ../Testing/bin/RemoveParticlesFromParticlesDataSetTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 23%] Built target RemoveParticlesFromParticlesDataSetTest
[ 23%] Built target ExtractParticlesFromChestRegionChestTypeLib
Linking CXX executable ../../bin/ExtractParticlesFromChestRegionChestType
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 24%] Built target ExtractParticlesFromChestRegionChestType
Linking CXX executable ../Testing/bin/ExtractParticlesFromChestRegionChestTypeTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 25%] Built target ExtractParticlesFromChestRegionChestTypeTest
[ 26%] Built target GenerateOtsuLungCastLib
Linking CXX executable ../../bin/GenerateOtsuLungCast
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 26%] Built target GenerateOtsuLungCast
Linking CXX executable ../Testing/bin/GenerateOtsuLungCastTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 26%] Built target GenerateOtsuLungCastTest
[ 27%] Built target GenerateAtlasConvexHullLib
Linking CXX executable ../../bin/GenerateAtlasConvexHull
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 27%] Built target GenerateAtlasConvexHull
Linking CXX executable ../Testing/bin/GenerateAtlasConvexHullTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 27%] Built target GenerateAtlasConvexHullTest
[ 28%] Built target RegisterLungAtlasLib
Linking CXX executable ../../bin/RegisterLungAtlas
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 28%] Built target RegisterLungAtlas
Linking CXX executable ../Testing/bin/RegisterLungAtlasTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 28%] Built target RegisterLungAtlasTest
[ 29%] Built target ResampleLabelMapLib
Linking CXX executable ../../bin/ResampleLabelMap
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: unable to execute command: Segmentation fault: 11
clang: error: linker command failed due to signal (use -v to see invocation)
[ 29%] Built target ResampleLabelMap
Linking CXX executable ../Testing/bin/ResampleLabelMapTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 29%] Built target ResampleLabelMapTest
[ 29%] Built target RescaleLabelMapLib
Linking CXX executable ../../bin/RescaleLabelMap
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: unable to execute command: Segmentation fault: 11
clang: error: linker command failed due to signal (use -v to see invocation)
[ 30%] Built target RescaleLabelMap
Linking CXX executable ../Testing/bin/RescaleLabelMapTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 30%] Built target RescaleLabelMapTest
[ 31%] Built target ResampleCT2DLib
Linking CXX executable ../../bin/ResampleCT2D
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 31%] Built target ResampleCT2D
Linking CXX executable ../Testing/bin/ResampleCT2DTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 31%] Built target ResampleCT2DTest
[ 32%] Built target ResampleCT3DLib
Linking CXX executable ../../bin/ResampleCT3D
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 32%] Built target ResampleCT3D
Linking CXX executable ../Testing/bin/ResampleCT3DTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 32%] Built target ResampleCT3DTest
[ 33%] Built target ResampleCTLib
Linking CXX executable ../../bin/ResampleCT
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 34%] Built target ResampleCT
Linking CXX executable ../Testing/bin/ResampleCTTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 34%] Built target ResampleCTTest
[ 35%] Built target QualityControlLib
Linking CXX executable ../../bin/QualityControl
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 35%] Built target QualityControl
Linking CXX executable ../Testing/bin/QualityControlTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 35%] Built target QualityControlTest
[ 36%] Built target RemoveChestTypeFromLabelMapUsingParticlesLib
Linking CXX executable ../../bin/RemoveChestTypeFromLabelMapUsingParticles
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: unable to execute command: Segmentation fault: 11
clang: error: linker command failed due to signal (use -v to see invocation)
[ 36%] Built target RemoveChestTypeFromLabelMapUsingParticles
Linking CXX executable ../Testing/bin/RemoveChestTypeFromLabelMapUsingParticlesTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 36%] Built target RemoveChestTypeFromLabelMapUsingParticlesTest
[ 36%] Built target SegmentLungLobesLib
Linking CXX executable ../../bin/SegmentLungLobes
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 36%] Built target SegmentLungLobes
Linking CXX executable ../Testing/bin/SegmentLungLobesTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 37%] Built target SegmentLungLobesTest
[ 37%] Built target ReadDicomWriteTagsLib
Linking CXX executable ../../bin/ReadDicomWriteTags
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 38%] Built target ReadDicomWriteTags
Linking CXX executable ../Testing/bin/ReadDicomWriteTagsTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 38%] Built target ReadDicomWriteTagsTest
[ 39%] Built target SplitLeftLungRightLungLib
Linking CXX executable ../../bin/SplitLeftLungRightLung
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 39%] Built target SplitLeftLungRightLung
Linking CXX executable ../Testing/bin/SplitLeftLungRightLungTest
ld: archive has no table of contents file '/.../CIP-build/lib/libCIPCommon.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 39%] Built target SplitLeftLungRightLungTest
The maximum number of reported warnings or errors has been reached!!!
Linking CXX shared library ../../lib/libvtkViewsInfovis-6.2.dylib
[100%] Built target vtkViewsInfovis
[ 24%] No install step for 'VTKv6'
[ 25%] Completed 'VTKv6'
[ 29%] Built target VTKv6
[ 30%] Performing update step (SVN update) for 'teem'
Updating '.':
At revision 6245.
[ 31%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake
CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):
Policy CMP0033 is not set: The export_library_dependencies command should
not be called. Run "cmake --help-policy CMP0033" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
teem
This warning is for project developers. Use -Wno-dev to suppress it.
[100%] Built target ITKVideoIO
[100%] Built target ITKVideoIO-all
[ 64%] No install step for 'ITKv4'
[ 65%] Completed 'ITKv4'
[ 69%] Built target ITKv4
[ 70%] Performing update step for 'SlicerExecutionModel'
[ 71%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
ModuleDescriptionParser
This warning is for project developers. Use -Wno-dev to suppress it.
-- Could NOT find PythonInterp: Found unsuitable version "2.7.9", but required is at least "3.2" (found /Users/acil-user/anaconda/bin/python)
-- Found Sphinx 1.2.3: /Users/acil-user/anaconda/bin/sphinx-build
-- Could NOT find Matlab (missing: MATLAB_MEX_SCRIPT MATLAB_INCLUDE_DIRS MATLAB_ROOT_DIR MATLAB_LIBRARIES MATLAB_LIBRARY_DIRS MATLAB_MEXEXT MATLAB_ARCH MATLAB_BIN)
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
-- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved!
-- Module opencv_shape disabled because opencv_video dependency can't be resolved!
-- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved!
-- Module opencv_superres disabled because opencv_video dependency can't be resolved!
-- Module opencv_ts disabled because opencv_videoio dependency can't be resolved!
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_core". Use
the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_features2d".
Use the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_flann". Use
the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_imgcodecs".
Use the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_imgproc". Use
the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_ml". Use the
target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_objdetect".
Use the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property.
Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The LOCATION property should not be read from target "opencv_photo". Use
the target name directly with add_custom_command, or use the generator
expression $<TARGET_FILE>, as appropriate.
Call Stack (most recent call first):
CMakeLists.txt:576 (include)
-- Performance tests: NO
-- C/C++ Examples: NO
--
-- Install path: /.../CIP-build/OpenCV-install
--
-- cvconfig.h is in: /.../CIP-build/OpenCV-build
-- -----------------------------------------------------------------
--
-- Configuring done
-- Generating done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
opencv_core
opencv_features2d
opencv_flann
opencv_imgcodecs
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