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----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-master-build/CIP-build

Build Log line 1133

[  0%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkGlyph3DWithScaling.cxx.o
[  1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageConnectivity.cxx.o
[  1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageErode.cxx.o
[  1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageNeighborhoodFilter.cxx.o
[  1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkNRRDReaderCIP.cxx.o
[  2%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkNRRDWriterCIP.cxx.o
[  2%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkComputeAirwayWall.cxx.o
[  2%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageReformatAlongRay2.cxx.o
[  3%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkComputeAirwayWallPolyData.cxx.o
[  3%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageResliceWithPlane.cxx.o

/.../CIP-master/Utilities/VTK/vtkImageResliceWithPlane.cxx:31:27: fatal error: vtkNRRDReader.h: No such file or directory

 #include "vtkNRRDReader.h"
                           ^
compilation terminated.
[  3%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkComputeCentroid.cxx.o
[  4%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageTubularConfidence.cxx.o
[  4%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkComputeMonogenicSignal.cxx.o
[  4%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkLungIntensityCorrection.cxx.o
[  4%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkEllipseFitting.cxx.o
[  5%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkMaskBoundingBox.cxx.o
[  5%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkExtractAirwayTree.cxx.o

[  6%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkNRRDExport.cxx.o
[  6%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkGeneralizedQuadratureKernelSource.cxx.o
[  7%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkSmoothLines.cxx.o
[  7%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageKernel.cxx.o
[  7%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkTubularScalePolyDataFilter.cxx.o
[  7%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageKernelSource.cxx.o
[  8%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkTubularScaleSelection.cxx.o
[  8%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageReformatAlongRay.cxx.o
[  8%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/ITK/itkFactoryRegistration.cxx.o
Linking CXX static library /.../CIP-master-build/lib/libCIPUtilities.a

/usr/bin/ar: CMakeFiles/CIPUtilities.dir/VTK/vtkImageResliceWithPlane.cxx.o: No such file or directory

[  8%] Built target CIPUtilities
Scanning dependencies of target CIPCommon
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
[ 10%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o
[ 10%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `Common/Testing/cipHelperTEST'.  Stop.

[ 16%] Built target cipHelperTEST
Scanning dependencies of target cipLobeSurfaceModelTEST
[ 17%] Building CXX object Common/Testing/CMakeFiles/cipLobeSurfaceModelTEST.dir/cipLobeSurfaceModelTEST.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `Common/Testing/cipLobeSurfaceModelTEST'.  Stop.

[ 17%] Built target cipLobeSurfaceModelTEST
Scanning dependencies of target cipNelderMeadSimplexOptimizerTEST
[ 17%] Building CXX object Common/Testing/CMakeFiles/cipNelderMeadSimplexOptimizerTEST.dir/cipNelderMeadSimplexOptimizerTEST.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `Common/Testing/cipNelderMeadSimplexOptimizerTEST'.  Stop.

[ 17%] Built target cipNelderMeadSimplexOptimizerTEST
Scanning dependencies of target itkCIPExtractChestLabelMapImageFilterTEST
[ 17%] Building CXX object Common/Testing/CMakeFiles/itkCIPExtractChestLabelMapImageFilterTEST.dir/itkCIPExtractChestLabelMapImageFilterTEST.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `Common/Testing/itkCIPExtractChestLabelMapImageFilterTEST'.  Stop.

[ 17%] Built target itkCIPExtractChestLabelMapImageFilterTEST
Scanning dependencies of target itkCIPMergeChestLabelMapsImageFilterTEST
[ 18%] Building CXX object Common/Testing/CMakeFiles/itkCIPMergeChestLabelMapsImageFilterTEST.dir/itkCIPMergeChestLabelMapsImageFilterTEST.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `Common/Testing/itkCIPMergeChestLabelMapsImageFilterTEST'.  Stop.

[ 18%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
Scanning dependencies of target cipChestRegionChestTypeLocationsIOTEST
[ 19%] Building CXX object IO/Testing/CMakeFiles/cipChestRegionChestTypeLocationsIOTEST.dir/cipChestRegionChestTypeLocationsIOTEST.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `IO/Testing/cipChestRegionChestTypeLocationsIOTEST'.  Stop.

[ 19%] Built target cipChestRegionChestTypeLocationsIOTEST
Scanning dependencies of target cipLobeSurfaceModelIOTEST
[ 19%] Building CXX object IO/Testing/CMakeFiles/cipLobeSurfaceModelIOTEST.dir/cipLobeSurfaceModelIOTEST.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `IO/Testing/cipLobeSurfaceModelIOTEST'.  Stop.

[ 19%] Built target cipLobeSurfaceModelIOTEST
Scanning dependencies of target ConvertDicomLib
[ 19%] Building CXX object CommandLineTools/ConvertDicom/CMakeFiles/ConvertDicomLib.dir/ConvertDicom.cxx.o
Linking CXX static library ../../bin/libConvertDicomLib.a
[ 20%] Built target ConvertDicomLib
Scanning dependencies of target ConvertDicom
[ 20%] Building CXX object CommandLineTools/ConvertDicom/CMakeFiles/ConvertDicom.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ConvertDicom'.  Stop.

[ 20%] Built target ConvertDicom
Scanning dependencies of target ConvertDicomTest
[ 20%] Building CXX object CommandLineTools/ConvertDicom/CMakeFiles/ConvertDicomTest.dir/Testing/ConvertDicomTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ConvertDicomTest'.  Stop.

[ 20%] Built target ConvertDicomTest
Scanning dependencies of target MergeParticleDataSetsLib
[ 20%] Building CXX object CommandLineTools/MergeParticleDataSets/CMakeFiles/MergeParticleDataSetsLib.dir/MergeParticleDataSets.cxx.o
Linking CXX static library ../../bin/libMergeParticleDataSetsLib.a
[ 20%] Built target MergeParticleDataSetsLib
Scanning dependencies of target MergeParticleDataSets
[ 20%] Building CXX object CommandLineTools/MergeParticleDataSets/CMakeFiles/MergeParticleDataSets.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/MergeParticleDataSets'.  Stop.

[ 20%] Built target MergeParticleDataSets
Scanning dependencies of target MergeParticleDataSetsTest
[ 21%] Building CXX object CommandLineTools/MergeParticleDataSets/CMakeFiles/MergeParticleDataSetsTest.dir/Testing/MergeParticleDataSetsTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/MergeParticleDataSetsTest'.  Stop.

[ 21%] Built target MergeParticleDataSetsTest
Scanning dependencies of target RemoveParticlesFromParticlesDataSetLib
[ 21%] Building CXX object CommandLineTools/RemoveParticlesFromParticlesDataSet/CMakeFiles/RemoveParticlesFromParticlesDataSetLib.dir/RemoveParticlesFromParticlesDataSet.cxx.o
Linking CXX static library ../../bin/libRemoveParticlesFromParticlesDataSetLib.a
[ 21%] Built target RemoveParticlesFromParticlesDataSetLib
Scanning dependencies of target RemoveParticlesFromParticlesDataSet
[ 22%] Building CXX object CommandLineTools/RemoveParticlesFromParticlesDataSet/CMakeFiles/RemoveParticlesFromParticlesDataSet.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/RemoveParticlesFromParticlesDataSet'.  Stop.

[ 22%] Built target RemoveParticlesFromParticlesDataSet
Scanning dependencies of target RemoveParticlesFromParticlesDataSetTest
[ 23%] Building CXX object CommandLineTools/RemoveParticlesFromParticlesDataSet/CMakeFiles/RemoveParticlesFromParticlesDataSetTest.dir/Testing/RemoveParticlesFromParticlesDataSetTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/RemoveParticlesFromParticlesDataSetTest'.  Stop.

[ 23%] Built target RemoveParticlesFromParticlesDataSetTest
Scanning dependencies of target ExtractParticlesFromChestRegionChestTypeLib
[ 23%] Building CXX object CommandLineTools/ExtractParticlesFromChestRegionChestType/CMakeFiles/ExtractParticlesFromChestRegionChestTypeLib.dir/ExtractParticlesFromChestRegionChestType.cxx.o
Linking CXX static library ../../bin/libExtractParticlesFromChestRegionChestTypeLib.a
[ 24%] Built target ExtractParticlesFromChestRegionChestTypeLib
Scanning dependencies of target ExtractParticlesFromChestRegionChestType
[ 24%] Building CXX object CommandLineTools/ExtractParticlesFromChestRegionChestType/CMakeFiles/ExtractParticlesFromChestRegionChestType.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ExtractParticlesFromChestRegionChestType'.  Stop.

[ 24%] Built target ExtractParticlesFromChestRegionChestType
Scanning dependencies of target ExtractParticlesFromChestRegionChestTypeTest
[ 24%] Building CXX object CommandLineTools/ExtractParticlesFromChestRegionChestType/CMakeFiles/ExtractParticlesFromChestRegionChestTypeTest.dir/Testing/ExtractParticlesFromChestRegionChestTypeTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ExtractParticlesFromChestRegionChestTypeTest'.  Stop.

[ 24%] Built target ExtractParticlesFromChestRegionChestTypeTest
Scanning dependencies of target GenerateOtsuLungCastLib
[ 24%] Building CXX object CommandLineTools/GenerateOtsuLungCast/CMakeFiles/GenerateOtsuLungCastLib.dir/GenerateOtsuLungCast.cxx.o
Linking CXX static library ../../bin/libGenerateOtsuLungCastLib.a
[ 24%] Built target GenerateOtsuLungCastLib
Scanning dependencies of target GenerateOtsuLungCast
[ 25%] Building CXX object CommandLineTools/GenerateOtsuLungCast/CMakeFiles/GenerateOtsuLungCast.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/GenerateOtsuLungCast'.  Stop.

[ 25%] Built target GenerateOtsuLungCast
Scanning dependencies of target GenerateOtsuLungCastTest
[ 26%] Building CXX object CommandLineTools/GenerateOtsuLungCast/CMakeFiles/GenerateOtsuLungCastTest.dir/Testing/GenerateOtsuLungCastTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/GenerateOtsuLungCastTest'.  Stop.

[ 26%] Built target GenerateOtsuLungCastTest
[ 26%] Generating GenerateAtlasConvexHullCLP.h
GenerateCLP --InputXML /.../CIP-master/CommandLineTools/GenerateAtlasConvexHull/GenerateAtlasConvexHull.xml --OutputCxx /.../CIP-master-build/CIP-build/CommandLineTools/GenerateAtlasConvexHull/GenerateAtlasConvexHullCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "" has 7 parameters
Scanning dependencies of target GenerateAtlasConvexHullLib
[ 27%] Building CXX object CommandLineTools/GenerateAtlasConvexHull/CMakeFiles/GenerateAtlasConvexHullLib.dir/GenerateAtlasConvexHull.cxx.o
Linking CXX static library ../../bin/libGenerateAtlasConvexHullLib.a
[ 27%] Built target GenerateAtlasConvexHullLib
Scanning dependencies of target GenerateAtlasConvexHull

[ 27%] Building CXX object CommandLineTools/GenerateAtlasConvexHull/CMakeFiles/GenerateAtlasConvexHull.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/GenerateAtlasConvexHull'.  Stop.

[ 27%] Built target GenerateAtlasConvexHull
Scanning dependencies of target GenerateAtlasConvexHullTest
[ 27%] Building CXX object CommandLineTools/GenerateAtlasConvexHull/CMakeFiles/GenerateAtlasConvexHullTest.dir/Testing/GenerateAtlasConvexHullTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/GenerateAtlasConvexHullTest'.  Stop.

[ 27%] Built target GenerateAtlasConvexHullTest
[ 27%] Generating RegisterLungAtlasCLP.h
GenerateCLP --InputXML /.../CIP-master/CommandLineTools/RegisterLungAtlas/RegisterLungAtlas.xml --OutputCxx /.../CIP-master-build/CIP-build/CommandLineTools/RegisterLungAtlas/RegisterLungAtlasCLP.h
GenerateCLP: Found 2 parameters groups
GenerateCLP: Group "I/O" has 3 parameters
GenerateCLP: Group "Parameters" has 2 parameters
Scanning dependencies of target RegisterLungAtlasLib
[ 28%] Building CXX object CommandLineTools/RegisterLungAtlas/CMakeFiles/RegisterLungAtlasLib.dir/RegisterLungAtlas.cxx.o
Linking CXX static library ../../bin/libRegisterLungAtlasLib.a
[ 28%] Built target RegisterLungAtlasLib

Scanning dependencies of target RegisterLungAtlas
[ 28%] Building CXX object CommandLineTools/RegisterLungAtlas/CMakeFiles/RegisterLungAtlas.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/RegisterLungAtlas'.  Stop.

[ 28%] Built target RegisterLungAtlas
Scanning dependencies of target RegisterLungAtlasTest
[ 28%] Building CXX object CommandLineTools/RegisterLungAtlas/CMakeFiles/RegisterLungAtlasTest.dir/Testing/RegisterLungAtlasTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/RegisterLungAtlasTest'.  Stop.

[ 28%] Built target RegisterLungAtlasTest
Scanning dependencies of target ResampleLabelMapLib
[ 28%] Building CXX object CommandLineTools/ResampleLabelMap/CMakeFiles/ResampleLabelMapLib.dir/ResampleLabelMap.cxx.o
Linking CXX static library ../../bin/libResampleLabelMapLib.a
[ 28%] Built target ResampleLabelMapLib
Scanning dependencies of target ResampleLabelMap
[ 29%] Building CXX object CommandLineTools/ResampleLabelMap/CMakeFiles/ResampleLabelMap.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ResampleLabelMap'.  Stop.

[ 29%] Built target ResampleLabelMap
Scanning dependencies of target ResampleLabelMapTest
[ 29%] Building CXX object CommandLineTools/ResampleLabelMap/CMakeFiles/ResampleLabelMapTest.dir/Testing/ResampleLabelMapTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ResampleLabelMapTest'.  Stop.

[ 29%] Built target ResampleLabelMapTest
[ 29%] Generating RescaleLabelMapCLP.h
GenerateCLP --InputXML /.../CIP-master/CommandLineTools/RescaleLabelMap/RescaleLabelMap.xml --OutputCxx /.../CIP-master-build/CIP-build/CommandLineTools/RescaleLabelMap/RescaleLabelMapCLP.h
GenerateCLP: Found 2 parameters groups
GenerateCLP: Group "I/O" has 2 parameters
GenerateCLP: Group "Rescaling parameters" has 3 parameters
Scanning dependencies of target RescaleLabelMapLib
[ 29%] Building CXX object CommandLineTools/RescaleLabelMap/CMakeFiles/RescaleLabelMapLib.dir/RescaleLabelMap.cxx.o
Linking CXX static library ../../bin/libRescaleLabelMapLib.a
[ 29%] Built target RescaleLabelMapLib

Scanning dependencies of target RescaleLabelMap
[ 30%] Building CXX object CommandLineTools/RescaleLabelMap/CMakeFiles/RescaleLabelMap.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/RescaleLabelMap'.  Stop.

[ 30%] Built target RescaleLabelMap
Scanning dependencies of target RescaleLabelMapTest
[ 31%] Building CXX object CommandLineTools/RescaleLabelMap/CMakeFiles/RescaleLabelMapTest.dir/Testing/RescaleLabelMapTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/RescaleLabelMapTest'.  Stop.

[ 31%] Built target RescaleLabelMapTest
Scanning dependencies of target ResampleCT2DLib
[ 31%] Building CXX object CommandLineTools/ResampleCT2D/CMakeFiles/ResampleCT2DLib.dir/ResampleCT2D.cxx.o
Linking CXX static library ../../bin/libResampleCT2DLib.a
[ 32%] Built target ResampleCT2DLib
Scanning dependencies of target ResampleCT2D
[ 32%] Building CXX object CommandLineTools/ResampleCT2D/CMakeFiles/ResampleCT2D.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ResampleCT2D'.  Stop.

[ 32%] Built target ResampleCT2D
Scanning dependencies of target ResampleCT2DTest
[ 32%] Building CXX object CommandLineTools/ResampleCT2D/CMakeFiles/ResampleCT2DTest.dir/Testing/ResampleCT2DTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ResampleCT2DTest'.  Stop.

[ 32%] Built target ResampleCT2DTest
Scanning dependencies of target ResampleCT3DLib
[ 32%] Building CXX object CommandLineTools/ResampleCT3D/CMakeFiles/ResampleCT3DLib.dir/ResampleCT3D.cxx.o
Linking CXX static library ../../bin/libResampleCT3DLib.a
[ 33%] Built target ResampleCT3DLib
Scanning dependencies of target ResampleCT3D
[ 33%] Building CXX object CommandLineTools/ResampleCT3D/CMakeFiles/ResampleCT3D.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ResampleCT3D'.  Stop.

[ 33%] Built target ResampleCT3D
Scanning dependencies of target ResampleCT3DTest
[ 33%] Building CXX object CommandLineTools/ResampleCT3D/CMakeFiles/ResampleCT3DTest.dir/Testing/ResampleCT3DTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ResampleCT3DTest'.  Stop.

[ 33%] Built target ResampleCT3DTest
Scanning dependencies of target ResampleCTLib
[ 33%] Building CXX object CommandLineTools/ResampleCT/CMakeFiles/ResampleCTLib.dir/ResampleCT.cxx.o
Linking CXX static library ../../bin/libResampleCTLib.a
[ 34%] Built target ResampleCTLib
Scanning dependencies of target ResampleCT
[ 34%] Building CXX object CommandLineTools/ResampleCT/CMakeFiles/ResampleCT.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ResampleCT'.  Stop.

[ 34%] Built target ResampleCT
Scanning dependencies of target ResampleCTTest
[ 34%] Building CXX object CommandLineTools/ResampleCT/CMakeFiles/ResampleCTTest.dir/Testing/ResampleCTTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ResampleCTTest'.  Stop.

[ 34%] Built target ResampleCTTest
Scanning dependencies of target QualityControlLib
[ 34%] Building CXX object CommandLineTools/QualityControl/CMakeFiles/QualityControlLib.dir/QualityControl.cxx.o
Linking CXX static library ../../bin/libQualityControlLib.a
[ 35%] Built target QualityControlLib
Scanning dependencies of target QualityControl
[ 35%] Building CXX object CommandLineTools/QualityControl/CMakeFiles/QualityControl.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/QualityControl'.  Stop.

[ 35%] Built target QualityControl
Scanning dependencies of target QualityControlTest
[ 35%] Building CXX object CommandLineTools/QualityControl/CMakeFiles/QualityControlTest.dir/Testing/QualityControlTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/QualityControlTest'.  Stop.

[ 35%] Built target QualityControlTest
[ 35%] Generating RemoveChestTypeFromLabelMapUsingParticlesCLP.h
GenerateCLP --InputXML /.../CIP-master/CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/RemoveChestTypeFromLabelMapUsingParticles.xml --OutputCxx /.../CIP-master-build/CIP-build/CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/RemoveChestTypeFromLabelMapUsingParticlesCLP.h
GenerateCLP: Found 2 parameters groups
GenerateCLP: Group "I/O" has 3 parameters
GenerateCLP: Group "Parameters" has 1 parameters
Scanning dependencies of target RemoveChestTypeFromLabelMapUsingParticlesLib
[ 35%] Building CXX object CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/CMakeFiles/RemoveChestTypeFromLabelMapUsingParticlesLib.dir/RemoveChestTypeFromLabelMapUsingParticles.cxx.o
Linking CXX static library ../../bin/libRemoveChestTypeFromLabelMapUsingParticlesLib.a
[ 35%] Built target RemoveChestTypeFromLabelMapUsingParticlesLib

Scanning dependencies of target RemoveChestTypeFromLabelMapUsingParticles
[ 36%] Building CXX object CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/CMakeFiles/RemoveChestTypeFromLabelMapUsingParticles.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/RemoveChestTypeFromLabelMapUsingParticles'.  Stop.

[ 36%] Built target RemoveChestTypeFromLabelMapUsingParticles
Scanning dependencies of target RemoveChestTypeFromLabelMapUsingParticlesTest
[ 36%] Building CXX object CommandLineTools/RemoveChestTypeFromLabelMapUsingParticles/CMakeFiles/RemoveChestTypeFromLabelMapUsingParticlesTest.dir/Testing/RemoveChestTypeFromLabelMapUsingParticlesTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/RemoveChestTypeFromLabelMapUsingParticlesTest'.  Stop.

[ 36%] Built target RemoveChestTypeFromLabelMapUsingParticlesTest
Scanning dependencies of target SegmentLungLobesLib
[ 37%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesLib.dir/SegmentLungLobes.cxx.o
Linking CXX static library ../../bin/libSegmentLungLobesLib.a
[ 37%] Built target SegmentLungLobesLib
Scanning dependencies of target SegmentLungLobes
[ 37%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobes.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/SegmentLungLobes'.  Stop.

[ 37%] Built target SegmentLungLobes
Scanning dependencies of target SegmentLungLobesTest
[ 37%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/SegmentLungLobesTest'.  Stop.

[ 37%] Built target SegmentLungLobesTest
Scanning dependencies of target ReadDicomWriteTagsLib
[ 37%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 37%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 38%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ReadDicomWriteTags'.  Stop.

[ 38%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest
[ 39%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsTest.dir/Testing/ReadDicomWriteTagsTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ReadDicomWriteTagsTest'.  Stop.

[ 39%] Built target ReadDicomWriteTagsTest
Scanning dependencies of target SplitLeftLungRightLungLib
[ 39%] Building CXX object CommandLineTools/SplitLeftLungRightLung/CMakeFiles/SplitLeftLungRightLungLib.dir/SplitLeftLungRightLung.cxx.o
Linking CXX static library ../../bin/libSplitLeftLungRightLungLib.a
[ 40%] Built target SplitLeftLungRightLungLib
Scanning dependencies of target SplitLeftLungRightLung
[ 40%] Building CXX object CommandLineTools/SplitLeftLungRightLung/CMakeFiles/SplitLeftLungRightLung.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/SplitLeftLungRightLung'.  Stop.

[ 40%] Built target SplitLeftLungRightLung
Scanning dependencies of target SplitLeftLungRightLungTest
[ 40%] Building CXX object CommandLineTools/SplitLeftLungRightLung/CMakeFiles/SplitLeftLungRightLungTest.dir/Testing/SplitLeftLungRightLungTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/SplitLeftLungRightLungTest'.  Stop.

[ 40%] Built target SplitLeftLungRightLungTest
Scanning dependencies of target ExtractChestLabelMapLib
[ 40%] Building CXX object CommandLineTools/ExtractChestLabelMap/CMakeFiles/ExtractChestLabelMapLib.dir/ExtractChestLabelMap.cxx.o
Linking CXX static library ../../bin/libExtractChestLabelMapLib.a
[ 41%] Built target ExtractChestLabelMapLib
Scanning dependencies of target ExtractChestLabelMap
[ 41%] Building CXX object CommandLineTools/ExtractChestLabelMap/CMakeFiles/ExtractChestLabelMap.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/ExtractChestLabelMap'.  Stop.

[ 41%] Built target ExtractChestLabelMap
Scanning dependencies of target ExtractChestLabelMapTest
[ 41%] Building CXX object CommandLineTools/ExtractChestLabelMap/CMakeFiles/ExtractChestLabelMapTest.dir/Testing/ExtractChestLabelMapTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/ExtractChestLabelMapTest'.  Stop.

[ 41%] Built target ExtractChestLabelMapTest
Scanning dependencies of target LabelParticlesByChestRegionChestTypeLib
[ 41%] Building CXX object CommandLineTools/LabelParticlesByChestRegionChestType/CMakeFiles/LabelParticlesByChestRegionChestTypeLib.dir/LabelParticlesByChestRegionChestType.cxx.o
Linking CXX static library ../../bin/libLabelParticlesByChestRegionChestTypeLib.a
[ 42%] Built target LabelParticlesByChestRegionChestTypeLib
Scanning dependencies of target LabelParticlesByChestRegionChestType
[ 42%] Building CXX object CommandLineTools/LabelParticlesByChestRegionChestType/CMakeFiles/LabelParticlesByChestRegionChestType.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/LabelParticlesByChestRegionChestType'.  Stop.

[ 42%] Built target LabelParticlesByChestRegionChestType
Scanning dependencies of target LabelParticlesByChestRegionChestTypeTest
[ 42%] Building CXX object CommandLineTools/LabelParticlesByChestRegionChestType/CMakeFiles/LabelParticlesByChestRegionChestTypeTest.dir/Testing/LabelParticlesByChestRegionChestTypeTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/LabelParticlesByChestRegionChestTypeTest'.  Stop.

[ 42%] Built target LabelParticlesByChestRegionChestTypeTest
Scanning dependencies of target GenerateStenciledLabelMapFromParticlesLib
[ 42%] Building CXX object CommandLineTools/GenerateStenciledLabelMapFromParticles/CMakeFiles/GenerateStenciledLabelMapFromParticlesLib.dir/GenerateStenciledLabelMapFromParticles.cxx.o
Linking CXX static library ../../bin/libGenerateStenciledLabelMapFromParticlesLib.a
[ 42%] Built target GenerateStenciledLabelMapFromParticlesLib
Scanning dependencies of target GenerateStenciledLabelMapFromParticles
[ 43%] Building CXX object CommandLineTools/GenerateStenciledLabelMapFromParticles/CMakeFiles/GenerateStenciledLabelMapFromParticles.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/GenerateStenciledLabelMapFromParticles'.  Stop.

[ 43%] Built target GenerateStenciledLabelMapFromParticles
Scanning dependencies of target GenerateStenciledLabelMapFromParticlesTest
[ 44%] Building CXX object CommandLineTools/GenerateStenciledLabelMapFromParticles/CMakeFiles/GenerateStenciledLabelMapFromParticlesTest.dir/Testing/GenerateStenciledLabelMapFromParticlesTest.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/GenerateStenciledLabelMapFromParticlesTest'.  Stop.

[ 44%] Built target GenerateStenciledLabelMapFromParticlesTest
[ 45%] Generating GenerateDistanceMapFromLabelMapCLP.h
GenerateCLP --InputXML /.../CIP-master/CommandLineTools/GenerateDistanceMapFromLabelMap/GenerateDistanceMapFromLabelMap.xml --OutputCxx /.../CIP-master-build/CIP-build/CommandLineTools/GenerateDistanceMapFromLabelMap/GenerateDistanceMapFromLabelMapCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "" has 6 parameters
Scanning dependencies of target GenerateDistanceMapFromLabelMapLib
[ 45%] Building CXX object CommandLineTools/GenerateDistanceMapFromLabelMap/CMakeFiles/GenerateDistanceMapFromLabelMapLib.dir/GenerateDistanceMapFromLabelMap.cxx.o
Linking CXX static library ../../bin/libGenerateDistanceMapFromLabelMapLib.a
[ 45%] Built target GenerateDistanceMapFromLabelMapLib
Scanning dependencies of target GenerateDistanceMapFromLabelMap

[ 45%] Building CXX object CommandLineTools/GenerateDistanceMapFromLabelMap/CMakeFiles/GenerateDistanceMapFromLabelMap.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o

gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `bin/GenerateDistanceMapFromLabelMap'.  Stop.

[ 45%] Built target GenerateDistanceMapFromLabelMap
Scanning dependencies of target GenerateDistanceMapFromLabelMapTest
[ 45%] Building CXX object CommandLineTools/GenerateDistanceMapFromLabelMap/CMakeFiles/GenerateDistanceMapFromLabelMapTest.dir/Testing/GenerateDistanceMapFromLabelMapTest.cxx.o
gmake[5]: *** No rule to make target `/.../CIP-master-build/lib/libCIPUtilities.a', needed by `CommandLineTools/Testing/bin/GenerateDistanceMapFromLabelMapTest'.  Stop.
[ 45%] Built target GenerateDistanceMapFromLabelMapTest
[ 45%] Generating FilterVesselParticleDataCLP.h
GenerateCLP --InputXML /.../CIP-master/CommandLineTools/FilterVesselParticleData/FilterVesselParticleData.xml --OutputCxx /.../CIP-master-build/CIP-build/CommandLineTools/FilterVesselParticleData/FilterVesselParticleDataCLP.h
GenerateCLP: Found 2 parameters groups
GenerateCLP: Group "IO" has 2 parameters
GenerateCLP: Group "Parameters" has 8 parameters
The maximum number of reported warnings or errors has been reached!!!

[ 15%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipLobeSurfaceModelIO.cxx.o
[ 15%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipChestRegionChestTypeLocationsIO.cxx.o
[ 16%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipThinPlateSplineSurfaceIO.cxx.o
Linking CXX static library /.../CIP-master-build/lib/libCIPIO.a
[ 16%] Built target CIPIO
Scanning dependencies of target CIP_PYTHON
running build_ext
cythoning /.../CIP-master/cip_python/wrap_ChestConventions.pyx to /.../CIP-master/cip_python/wrap_ChestConventions.cpp
building 'ChestConventions' extension
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP-master/Common/ -I/home/ec2-user/anaconda/include/python2.7 -c /.../CIP-master/cip_python/wrap_ChestConventions.cpp -o build/temp.linux-x86_64-2.7/.../CIP-master/cip_python/wrap_ChestConventions.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/c++ -pthread -shared build/temp.linux-x86_64-2.7/.../CIP-master/cip_python/wrap_ChestConventions.o -L/.../CIP-master-build/lib -L/home/ec2-user/anaconda/lib -lChestConventions -lpython2.7 -o /.../CIP-master/cip_python/ChestConventions.so
[ 16%] Built target CIP_PYTHON
Scanning dependencies of target cipHelperTEST
[ 16%] Building CXX object Common/Testing/CMakeFiles/cipHelperTEST.dir/cipHelperTEST.cxx.o

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