CDash : CIP

Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-master-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20150428-0400-Nightly (related builds)
Time: 2015-04-28T23:08:09 EDT
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F34
Compiler Version: unknown
CTest version: ctest-3.0.2

Current Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	0	19
Test	49	0

Previous Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	0	3
Test	40	0

History

Show Build History
Build History Filter

Notes

Add a Note to this Build

Graph

Show Build Graphs

Stage: Update (0 errors, 0 warnings)

Start Time: 2015-04-28T23:07:38 EDT
End Time: 2015-04-28T23:07:39 EDT
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 143

Configure (0 errors, 0 warnings)

Start Time: 2015-04-28T23:07:40 EDT
End Time: 2015-04-28T23:08:04 EDT
Configure Command: /Users/acil-user/Library/Enthought/Canopy_64bit/User/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP-master"
Configure Return Value: 0
Configure Output:

----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-master-build/CIP-build

View Configure Summary

Build (0 errors, 19 warnings)

Build command: -- -i
Start Time: 2015-04-28T23:08:09 EDT
End Time: 2015-04-28T23:19:57 EDT

View Errors Summary

Build Warnings (19)

Linking CXX shared library ../../lib/libvtkViewsInfovis-6.2.dylib
[100%] Built target vtkViewsInfovis
[ 49%] No install step for 'VTKv6'
[ 50%] Completed 'VTKv6'
[ 56%] Built target VTKv6
[ 57%] Performing update step (SVN update) for 'teem'
Updating '.':
At revision 6245.
[ 59%] Performing configure step for 'teem'
loading initial cache file /.../CIP-master-build/teem-prefix/tmp/teem-cache.cmake

CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):

  Policy CMP0033 is not set: The export_library_dependencies command should
  not be called.  Run "cmake --help-policy CMP0033" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

[ 99%] Built target unu
Linking C executable ../../bin/vprobe
[100%] Built target vprobe
[ 63%] No install step for 'teem'
[ 64%] Completed 'teem'
[ 70%] Built target teem
[ 71%] Performing update step for 'SlicerExecutionModel'
[ 73%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-master-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 1296

File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx Line: 1

Linking CXX static library /.../CIP-master-build/lib/libCIPUtilities.a
[  8%] Built target CIPUtilities
Scanning dependencies of target CIPCommon
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o
[  8%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o
[  9%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
[ 10%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o

/.../CIP-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:1:9: warning: '_itCIPkMergeChestLabelMapsImageFilter_txx' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]

#ifndef _itCIPkMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Build Log line 1299

File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx Line: 2

/.../CIP-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:2:9: note: '_itkCIPMergeChestLabelMapsImageFilter_txx' is defined here; did you mean '_itCIPkMergeChestLabelMapsImageFilter_txx'?

#define _itkCIPMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        _itCIPkMergeChestLabelMapsImageFilter_txx
1 warning generated.
[ 10%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
[ 10%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselParticleConnectedComponentFilter.cxx.o
[ 10%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayParticleConnectedComponentFilter.cxx.o
[ 11%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureParticleConnectedComponentFilter.cxx.o
[ 11%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
[ 11%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o

Build Log line 1335

File: cip_python/wrap_ChestConventions.cpp Line: 4934

[ 15%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipLobeSurfaceModelIO.cxx.o
[ 15%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipChestRegionChestTypeLocationsIO.cxx.o
[ 16%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipThinPlateSplineSurfaceIO.cxx.o
Linking CXX static library /.../CIP-master-build/lib/libCIPIO.a
[ 16%] Built target CIPIO
Scanning dependencies of target CIP_PYTHON
running build_ext
cythoning /.../CIP-master/cip_python/wrap_ChestConventions.pyx to /.../CIP-master/cip_python/wrap_ChestConventions.cpp
building 'ChestConventions' extension
/usr/bin/cc -fno-strict-aliasing -I/Users/acil-user/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/.../CIP-master/Common/ -I/Users/acil-user/anaconda/include/python2.7 -c /.../CIP-master/cip_python/wrap_ChestConventions.cpp -o build/temp.macosx-10.5-x86_64-2.7/.../CIP-master/cip_python/wrap_ChestConventions.o

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:4934:28: warning: unused function '__Pyx_PyObject_AsString' [-Wunused-function]

static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
                           ^

Build Log line 1338

File: cip_python/wrap_ChestConventions.cpp Line: 4931

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:4931:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
                               ^

Build Log line 1341

File: cip_python/wrap_ChestConventions.cpp Line: 315

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:315:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]

static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
                            ^

Build Log line 1344

File: cip_python/wrap_ChestConventions.cpp Line: 5046

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:5046:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]

static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^

Build Log line 1347

File: cip_python/wrap_ChestConventions.cpp Line: 5071

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:5071:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]

static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                ^

Build Log line 1350

File: cip_python/wrap_ChestConventions.cpp Line: 4670

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:4670:32: warning: unused function '__Pyx_PyInt_From_long' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
                               ^

Build Log line 1353

File: cip_python/wrap_ChestConventions.cpp Line: 4696

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:4696:27: warning: function '__Pyx_PyInt_As_long' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
                          ^

Build Log line 1356

File: cip_python/wrap_ChestConventions.cpp Line: 4791

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:4791:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
                         ^

Build Log line 1359

File: cip_python/wrap_ChestConventions.cpp Line: 3329

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:3329:32: warning: unused function '__pyx_convert_PyObject_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyObject_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1362

File: cip_python/wrap_ChestConventions.cpp Line: 3379

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:3379:32: warning: unused function '__pyx_convert_PyUnicode_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyUnicode_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1365

File: cip_python/wrap_ChestConventions.cpp Line: 3429

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:3429:32: warning: unused function '__pyx_convert_PyStr_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyStr_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1368

File: cip_python/wrap_ChestConventions.cpp Line: 3529

/.../CIP-master/cip_python/wrap_ChestConventions.cpp:3529:32: warning: unused function '__pyx_convert_PyByteArray_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyByteArray_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^
12 warnings generated.
/usr/bin/c++ -bundle -undefined dynamic_lookup -L/Users/acil-user/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/.../CIP-master/cip_python/wrap_ChestConventions.o -L/.../CIP-master-build/lib -L/Users/acil-user/anaconda/lib -lChestConventions -o /.../CIP-master/cip_python/ChestConventions.so
[ 16%] Built target CIP_PYTHON
Scanning dependencies of target cipHelperTEST
[ 16%] Building CXX object Common/Testing/CMakeFiles/cipHelperTEST.dir/cipHelperTEST.cxx.o
Linking CXX executable cipHelperTEST
[ 16%] Built target cipHelperTEST
Scanning dependencies of target cipLobeSurfaceModelTEST

Build Log line 1603

File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx Line: 298

Scanning dependencies of target SegmentLungLobes
[ 37%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobes.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/SegmentLungLobes
[ 37%] Built target SegmentLungLobes
Scanning dependencies of target SegmentLungLobesTest
[ 37%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 37%] Built target SegmentLungLobesTest
Scanning dependencies of target ReadDicomWriteTagsLib
[ 37%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o

/.../CIP-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]

        if ( commaLocation != std::string::npos )
             ~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~

Build Log line 1606

File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx Line: 304

/.../CIP-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]

        if ( newlineLocation != std::string::npos )
             ~~~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 37%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 38%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../CIP-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 38%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest

View Warnings Summary

Test (40 passed, 49 failed, 0 not run)

View Tests Summary