Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20150413-0400-Nightly (related builds)
Time: 2015-04-13T23:02:24 EDT
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F34
Compiler Version: unknown
CTest version: ctest-3.0.2

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Stage: Update (0 errors, 0 warnings)

Start Time: 2015-04-13T23:01:55 EDT
End Time: 2015-04-13T23:01:55 EDT
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 2

Configure (0 errors, 0 warnings)

Start Time: 2015-04-13T23:01:56 EDT
End Time: 2015-04-13T23:02:20 EDT
Configure Command: /Users/acil-user/Library/Enthought/Canopy_64bit/User/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 0
Configure Output:
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
CIP_PYTHON=/Users/acil-user/Projects/CIP-build/CIPPython-install
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 24 warnings)

Build command: -- -i
Start Time: 2015-04-13T23:02:24 EDT
End Time: 2015-04-13T23:04:06 EDT

View Errors Summary

Build Warnings (24)
-- Could NOT find PythonInterp: Found unsuitable version "2.7.9", but required is at least "3.2" (found /Users/acil-user/anaconda/bin/python)
-- Found Sphinx 1.2.3: /Users/acil-user/anaconda/bin/sphinx-build
-- Could NOT find Matlab (missing:  MATLAB_MEX_SCRIPT MATLAB_INCLUDE_DIRS MATLAB_ROOT_DIR MATLAB_LIBRARIES MATLAB_LIBRARY_DIRS MATLAB_MEXEXT MATLAB_ARCH MATLAB_BIN) 
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
-- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved!
-- Module opencv_shape disabled because opencv_video dependency can't be resolved!
-- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved!
-- Module opencv_superres disabled because opencv_video dependency can't be resolved!
-- Module opencv_ts disabled because opencv_videoio dependency can't be resolved!
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_core".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_features2d".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_flann".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_imgcodecs".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_imgproc".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_ml".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
-- 
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_objdetect".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

-- General configuration for OpenCV 3.0.0-beta =====================================
--   Version control:               3.0.0-beta
-- 
  The LOCATION property should not be read from target "opencv_photo".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.
--     Tests:                       NO
--     Performance tests:           NO
--     C/C++ Examples:              NO
-- 
--   Install path:                  /.../CIP-build/OpenCV-install
-- 
--   cvconfig.h is in:              /.../CIP-build/OpenCV-build
-- -----------------------------------------------------------------
-- 
-- Configuring done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   opencv_core
   opencv_features2d
   opencv_flann
   opencv_imgcodecs
Linking CXX shared library ../../lib/libvtkViewsInfovis-6.2.dylib
[100%] Built target vtkViewsInfovis
[ 54%] No install step for 'VTKv6'
[ 56%] Completed 'VTKv6'
[ 59%] Built target VTKv6
[ 60%] Performing update step (SVN update) for 'teem'
Updating '.':
At revision 6222.
[ 62%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake
CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):
  Policy CMP0033 is not set: The export_library_dependencies command should
  not be called.  Run "cmake --help-policy CMP0033" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.
[100%] Built target ITKVideoIO
[100%] Built target ITKVideoIO-all
[ 74%] No install step for 'ITKv4'
[ 75%] Completed 'ITKv4'
[ 79%] Built target ITKv4
[ 80%] Performing update step for 'SlicerExecutionModel'
[ 81%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 1812


File: cip_python/wrap_ChestConventions.cpp Line: 4934
[ 91%] Performing forcebuild step for 'CIP'
[ 92%] Performing build step for 'CIP'
[  2%] Built target CIPUtilities
[  8%] Built target CIPCommon
[  9%] Built target ChestConventions
[ 11%] Built target CIPIO
running build_ext
skipping '/.../CIP/cip_python/wrap_ChestConventions.cpp' Cython extension (up-to-date)
building 'ChestConventions' extension
/usr/bin/cc -fno-strict-aliasing -I/.../CIP-build/CIPPython-install/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/.../CIP/Common/ -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/cip_python/wrap_ChestConventions.cpp -o build/temp.macosx-10.5-x86_64-2.7/.../CIP/cip_python/wrap_ChestConventions.o
/.../CIP/cip_python/wrap_ChestConventions.cpp:4934:28: warning: unused function '__Pyx_PyObject_AsString' [-Wunused-function]
static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
                           ^

Build Log line 1815


File: cip_python/wrap_ChestConventions.cpp Line: 4931
/.../CIP/cip_python/wrap_ChestConventions.cpp:4931:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
                               ^

Build Log line 1818


File: cip_python/wrap_ChestConventions.cpp Line: 315
/.../CIP/cip_python/wrap_ChestConventions.cpp:315:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
                            ^

Build Log line 1821


File: cip_python/wrap_ChestConventions.cpp Line: 5046
/.../CIP/cip_python/wrap_ChestConventions.cpp:5046:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^

Build Log line 1824


File: cip_python/wrap_ChestConventions.cpp Line: 5071
/.../CIP/cip_python/wrap_ChestConventions.cpp:5071:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                ^

Build Log line 1827


File: cip_python/wrap_ChestConventions.cpp Line: 4670
/.../CIP/cip_python/wrap_ChestConventions.cpp:4670:32: warning: unused function '__Pyx_PyInt_From_long' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
                               ^

Build Log line 1830


File: cip_python/wrap_ChestConventions.cpp Line: 4696
/.../CIP/cip_python/wrap_ChestConventions.cpp:4696:27: warning: function '__Pyx_PyInt_As_long' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
                          ^

Build Log line 1833


File: cip_python/wrap_ChestConventions.cpp Line: 4791
/.../CIP/cip_python/wrap_ChestConventions.cpp:4791:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
                         ^

Build Log line 1836


File: cip_python/wrap_ChestConventions.cpp Line: 3329
/.../CIP/cip_python/wrap_ChestConventions.cpp:3329:32: warning: unused function '__pyx_convert_PyObject_string_to_py_std__in_string' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_convert_PyObject_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1839


File: cip_python/wrap_ChestConventions.cpp Line: 3379
/.../CIP/cip_python/wrap_ChestConventions.cpp:3379:32: warning: unused function '__pyx_convert_PyUnicode_string_to_py_std__in_string' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_convert_PyUnicode_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1842


File: cip_python/wrap_ChestConventions.cpp Line: 3429
/.../CIP/cip_python/wrap_ChestConventions.cpp:3429:32: warning: unused function '__pyx_convert_PyStr_string_to_py_std__in_string' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_convert_PyStr_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1845


File: cip_python/wrap_ChestConventions.cpp Line: 3529
/.../CIP/cip_python/wrap_ChestConventions.cpp:3529:32: warning: unused function '__pyx_convert_PyByteArray_string_to_py_std__in_string' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_convert_PyByteArray_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^
12 warnings generated.
/usr/bin/c++ -bundle -undefined dynamic_lookup -L/.../CIP-build/CIPPython-install/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/.../CIP/cip_python/wrap_ChestConventions.o -L/.../CIP-build/lib -L/.../CIP-build/CIPPython-install/lib -lChestConventions -o /.../CIP-build/CIP-build/cip_python/ChestConventions.so
[ 11%] Built target CIP_PYTHON
Linking CXX executable cipHelperTEST
[ 11%] Built target cipHelperTEST
Linking CXX executable cipLobeSurfaceModelTEST
[ 12%] Built target cipLobeSurfaceModelTEST
Linking CXX executable cipNelderMeadSimplexOptimizerTEST

View Warnings Summary

Test (49 passed, 4 failed, 0 not run)
View Tests Summary