Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20150411-0400-Nightly (related builds)
Time: 2015-04-11T23:05:37 EDT
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F34
Compiler Version: unknown
CTest version: ctest-3.0.2

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Configure (0 errors, 0 warnings)

Start Time: 2015-04-11T23:05:10 EDT
End Time: 2015-04-11T23:05:34 EDT
Configure Command: /Users/acil-user/Library/Enthought/Canopy_64bit/User/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
CIP_PYTHON=/Users/acil-user/Projects/CIP-build/CIPPython-install
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (5 errors, 12 warnings)

Build command: -- -i
Start Time: 2015-04-11T23:05:37 EDT
End Time: 2015-04-11T23:07:19 EDT

The following packages will be REMOVED:

    conda:     3.9.1-py27_0
    conda-env: 2.1.3-py27_0
    openssl:   1.0.1k-0    
    requests:  2.5.3-py27_0
    sqlite:    3.8.4.1-0   
    tk:        8.5.15-0    

[ 37%] Performing installnumpy step for 'CIPPython'

make[2]: CIPPython-install/bin/conda: No such file or directory

[ 38%] Performing installscipy step for 'CIPPython'

make[2]: CIPPython-install/bin/conda: No such file or directory

[ 39%] Performing installvtk step for 'CIPPython'

make[2]: CIPPython-install/bin/conda: No such file or directory

[ 40%] Performing installpandas step for 'CIPPython'

make[2]: CIPPython-install/bin/conda: No such file or directory

[ 41%] Performing installnose step for 'CIPPython'

make[2]: CIPPython-install/bin/conda: No such file or directory

[ 43%] Performing installpynrrd step for 'CIPPython'
ERROR:root:code for hash md5 was not found.
Traceback (most recent call last):
  File "/.../CIP-build/CIPPython-install/lib/python2.7/hashlib.py", line 147, in <module>
    globals()[__func_name] = __get_hash(__func_name)
  File "/.../CIP-build/CIPPython-install/lib/python2.7/hashlib.py", line 97, in __get_builtin_constructor
    raise ValueError('unsupported hash type ' + name)
ValueError: unsupported hash type md5
ERROR:root:code for hash sha1 was not found.
Traceback (most recent call last):
View Errors Summary


Build Warnings (12)
Linking CXX shared library ../../lib/libvtkViewsInfovis-6.2.dylib
[100%] Built target vtkViewsInfovis
[ 54%] No install step for 'VTKv6'
[ 55%] Completed 'VTKv6'
[ 59%] Built target VTKv6
[ 60%] Performing update step for 'SlicerExecutionModel'
[ 61%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Could NOT find PythonInterp: Found unsuitable version "2.7.9", but required is at least "3.2" (found /Users/acil-user/anaconda/bin/python)
-- Found Sphinx 1.2.3: /Users/acil-user/anaconda/bin/sphinx-build
-- Could NOT find Matlab (missing:  MATLAB_MEX_SCRIPT MATLAB_INCLUDE_DIRS MATLAB_ROOT_DIR MATLAB_LIBRARIES MATLAB_LIBRARY_DIRS MATLAB_MEXEXT MATLAB_ARCH MATLAB_BIN) 
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
-- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved!
-- Module opencv_shape disabled because opencv_video dependency can't be resolved!
-- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved!
-- Module opencv_superres disabled because opencv_video dependency can't be resolved!
-- Module opencv_ts disabled because opencv_videoio dependency can't be resolved!
-- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)

CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_core".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.


CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_features2d".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.


CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_flann".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.


CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_imgcodecs".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.


CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_imgproc".  Use
  the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.


CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_ml".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
-- 
-- General configuration for OpenCV 3.0.0-beta =====================================
This warning is for project developers.  Use -Wno-dev to suppress it.


CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "opencv_objdetect".
  Use the target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

Call Stack (most recent call first):
  CMakeLists.txt:576 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.


CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):

  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

--   Version control:               3.0.0-beta
-- 
--   Platform:
--     Host:                        Darwin 13.4.0 x86_64
  The LOCATION property should not be read from target "opencv_photo".  Use
  the target name directly with add_custom_command, or use the generator
--     Performance tests:           NO
--     C/C++ Examples:              NO
-- 
--   Install path:                  /.../CIP-build/OpenCV-install
-- 
--   cvconfig.h is in:              /.../CIP-build/OpenCV-build
-- -----------------------------------------------------------------
-- 
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   opencv_core
   opencv_features2d
   opencv_flann
   opencv_imgcodecs
-- Up-to-date: /.../CIP-build/OpenCV-install/share/OpenCV/lbpcascades/lbpcascade_frontalface.xml
-- Up-to-date: /.../CIP-build/OpenCV-install/share/OpenCV/lbpcascades/lbpcascade_profileface.xml
-- Up-to-date: /.../CIP-build/OpenCV-install/share/OpenCV/lbpcascades/lbpcascade_silverware.xml
[ 75%] Completed 'OpenCV'
[ 79%] Built target OpenCV
[ 80%] Performing update step (SVN update) for 'teem'
Updating '.':
At revision 6222.
[ 81%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake

CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):

  Policy CMP0033 is not set: The export_library_dependencies command should
  not be called.  Run "cmake --help-policy CMP0033" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.


View Warnings Summary


Test (41  passed, 12 failed, 0 not run)
 
View Tests Summary