Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20150411-0400-Nightly (related builds)
Time: 2015-04-11T00:04:16 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
Compiler Version: unknown
CTest version: ctest-2.8.11

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Stage: Update (0 errors, 0 warnings)

Start Time: 2015-04-11T00:03:55 EDT
End Time: 2015-04-11T00:03:56 EDT
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 3

Configure (0 errors, 0 warnings)

Start Time: 2015-04-11T00:03:57 EDT
End Time: 2015-04-11T00:04:15 EDT
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
CIP_PYTHON=/home/ec2-user/Projects/CIP-build/CIPPython-install
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (2 errors, 0 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2015-04-11T00:04:16 EDT
End Time: 2015-04-11T00:34:04 EDT

From git://github.com/acil-bwh/CIPPython
   8faff47..f8dc121  master     -> origin/master
Already on 'master'
Your branch is behind 'origin/master' by 4 commits, and can be fast-forwarded.
  (use "git pull" to update your local branch)
[ 51%] No configure step for 'CIPPython'
[ 53%] No build step for 'CIPPython'
[ 54%] Performing install step for 'CIPPython'
PREFIX=/.../CIP-build/CIPPython-install
installing: python-2.7.9-1 ...

tar (child): bzip2: Cannot exec: No such file or directory

tar (child): Error is not recoverable: exiting now
tar: Child returned status 2
tar: Error is not recoverable: exiting now
[ 55%] Performing installcython step for 'CIPPython'
gmake[2]: CIPPython-install/bin/conda: Command not found
[ 56%] Performing installnumpy step for 'CIPPython'
gmake[2]: CIPPython-install/bin/conda: Command not found
[ 58%] Performing installscipy step for 'CIPPython'
gmake[2]: CIPPython-install/bin/conda: Command not found
[ 59%] Performing installvtk step for 'CIPPython'
[  9%] Building CXX object Common/CMakeFiles/ChestConventions.dir/cipChestConventions.cxx.o
Linking CXX static library /.../CIP-build/lib/libChestConventions.a
[  9%] Built target ChestConventions
Scanning dependencies of target CIPIO
[ 10%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipLobeSurfaceModelIO.cxx.o
[ 10%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipChestRegionChestTypeLocationsIO.cxx.o
[ 10%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipThinPlateSplineSurfaceIO.cxx.o
[ 11%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipGeometryTopologyDataIO.cxx.o
Linking CXX static library /.../CIP-build/lib/libCIPIO.a
[ 11%] Built target CIPIO

/bin/sh: /.../CIP-build/CIPPython-install/bin/python: No such file or directory

[ 11%] Built target CIP_PYTHON
Scanning dependencies of target cipHelperTEST
[ 11%] Building CXX object Common/Testing/CMakeFiles/cipHelperTEST.dir/cipHelperTEST.cxx.o
Linking CXX executable cipHelperTEST
[ 11%] Built target cipHelperTEST
Scanning dependencies of target cipLobeSurfaceModelTEST
[ 12%] Building CXX object Common/Testing/CMakeFiles/cipLobeSurfaceModelTEST.dir/cipLobeSurfaceModelTEST.cxx.o
Linking CXX executable cipLobeSurfaceModelTEST
[ 12%] Built target cipLobeSurfaceModelTEST
Scanning dependencies of target cipNelderMeadSimplexOptimizerTEST
View Errors Summary


Build Warnings (0)

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Test (48  passed, 5 failed, 0 not run)
 
View Tests Summary