Friday, August 14 2026 02:02:55
CIP
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Show Build Graphs----------- ENTRY ------------ ----------- PHASE 2 ------------ Configuring CIP... ----------- DONE ------------ -- Configuring SEM CLI module: ConvertDicom -- Configuring SEM CLI module: MergeParticleDataSets -- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet -- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType -- Configuring SEM CLI module: GenerateOtsuLungCast -- Configuring SEM CLI module: GenerateAtlasConvexHull -- Configuring SEM CLI module: RegisterLungAtlas -- Configuring SEM CLI module: ResampleLabelMap -- Configuring SEM CLI module: RescaleLabelMap -- Configuring CIP -- Configuring SEM CLI module: ResampleCT2D -- Configuring CIP -- Configuring SEM CLI module: ResampleCT3D -- Configuring CIP -- Configuring SEM CLI module: ResampleCT -- Configuring SEM CLI module: QualityControl -- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles -- Configuring SEM CLI module: SegmentLungLobes -- Configuring SEM CLI module: ReadDicomWriteTags -- Configuring SEM CLI module: SplitLeftLungRightLung -- Configuring SEM CLI module: ExtractChestLabelMap -- Configuring SEM CLI module: LabelParticlesByChestRegionChestType -- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles -- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap -- Configuring SEM CLI module: FilterVesselParticleData -- Configuring SEM CLI module: FilterAirwayParticleData -- Configuring SEM CLI module: ScourParticleData -- Configuring SEM CLI module: ReadNRRDsWriteVTK -- Configuring SEM CLI module: ComputeCrossSectionalArea -- Configuring SEM CLI module: ComputeIntensityStatistics -- Configuring SEM CLI module: FilterFissureParticleData -- Configuring SEM CLI module: GenerateLobeSurfaceModels -- Configuring SEM CLI module: ClassifyFissureParticles -- Configuring SEM CLI module: CropLung -- Configuring SEM CLI module: GenerateModel -- Configuring SEM CLI module: GenerateImageSubVolumes -- Configuring SEM CLI module: GenerateMedianFilteredImage -- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults -- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType -- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes -- Configuring SEM CLI module: ComputeDistanceMap -- Configuring SEM CLI module: TransferFieldDataToFromPointData -- Configuring SEM CLI module: PerturbParticles -- Configuring SEM CLI module: ReadWriteRegionAndTypePoints -- Configuring SEM CLI module: PerformMorphological -- Configuring SEM CLI module: GenerateOverlayImages -- Configuring SEM CLI module: GetTransformationSimilarityMetric3D -- Configuring SEM CLI module: GetTransformationSimilarityMetric2D -- Configuring SEM CLI module: GetTransformationSimilarityMetric -- Configuring SEM CLI module: GetTransformationKappa2D -- Configuring SEM CLI module: GetTransformationKappa -- Configuring SEM CLI module: ReadWriteImageData -- Configuring SEM CLI module: GetStructuresInLabelMap -- Configuring SEM CLI module: GeneratePartialLungLabelMap -- Configuring SEM CLI module: ReadVidaWriteCIP -- Configuring SEM CLI module: RegisterLabelMaps -- Configuring SEM CLI module: RegisterCT -- Configuring SEM CLI module: RegisterCT2D -- Configuring SEM CLI module: MergeChestLabelMaps -- Configuring SEM CLI module: MaskOutLabelMapStructures -- Configuring SEM CLI module: ComputeFeatureStrength -- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints -- Configuring SEM CLI module: GenerateSimpleLungMask -- Configuring SEM CLI module: GenerateBinaryThinning3D -- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue -- Configuring SEM CLI module: FilterConnectedComponents -- Configuring SEM CLI module: EnhanceFissuresInImage -- Configuring SEM CLI module: ComputeFissureFeatureVectors -- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData -- Configuring SEM CLI module: GenerateLesionSegmentation -- Configuring SEM CLI module: RemapLabelMap CIP_PYTHON=/Users/jonieva/Projects/CIP-build/CIPPython-install -- Configuring done -- Generating done -- Build files have been written to: /Users/jonieva/Projects/CIP-build/CIP-build
The following packages will be REMOVED:
conda: 3.9.1-py27_0
conda-env: 2.1.3-py27_0
openssl: 1.0.1k-0
requests: 2.5.3-py27_0
sqlite: 3.8.4.1-0
tk: 8.5.15-0
[ 66%] Performing installnumpy step for 'CIPPython'
make[2]: CIPPython-install/bin/conda: No such file or directory
[ 67%] Performing installscipy step for 'CIPPython'
make[2]: CIPPython-install/bin/conda: No such file or directory
[ 69%] Performing installvtk step for 'CIPPython'
make[2]: CIPPython-install/bin/conda: No such file or directory
[ 70%] Performing installpandas step for 'CIPPython'
make[2]: CIPPython-install/bin/conda: No such file or directory
[ 71%] Performing installnose step for 'CIPPython'
make[2]: CIPPython-install/bin/conda: No such file or directory
[ 72%] Performing installpynrrd step for 'CIPPython'
ERROR:root:code for hash md5 was not found.
Traceback (most recent call last):
File "/.../CIP-build/CIPPython-install/lib/python2.7/hashlib.py", line 147, in <module>
globals()[__func_name] = __get_hash(__func_name)
File "/.../CIP-build/CIPPython-install/lib/python2.7/hashlib.py", line 97, in __get_builtin_constructor
raise ValueError('unsupported hash type ' + name)
ValueError: unsupported hash type md5
ERROR:root:code for hash sha1 was not found.
Traceback (most recent call last):View Errors Summary-- Up-to-date: /.../CIP-build/zlib-install/include/zlib.h -- Up-to-date: /.../CIP-build/zlib-install/include/zconf.h -- Up-to-date: /.../CIP-build/zlib-install/include/zlib_mangle.h -- Up-to-date: /.../CIP-build/zlib-install/include/zlibDllConfig.h -- Up-to-date: /.../CIP-build/zlib-install/doc/zlib-1.2.3/Copyright.txt [ 16%] Completed 'zlib' [ 19%] Built target zlib [ 20%] Performing update step for 'VTKv6' [ 22%] Performing configure step for 'VTKv6' loading initial cache file /.../CIP-build/VTKv6-prefix/tmp/VTKv6-cache.cmake
CMake Warning (dev) at CMake/CheckCXXSourceRuns.cmake:16 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_CMAKE_REQUIRE_LARGE_FILE_SUPPORT" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:228 (CHECK_CXX_SOURCE_RUNS)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/vtkTestTypes.cmake:132 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_TYPE_CHAR_IS_SIGNED" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:305 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/vtkTestFullSpecialization.cmake:1 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_COMPILER_HAS_FULL_SPECIALIZATION" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:311 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/vtkTestExplicitInstantiation.cmake:6 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_EXPLICIT_TEMPLATES" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:314 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/vtkTestBuiltins.cmake:3 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_HAVE_SYNC_BUILTINS" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:317 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/vtkTestStreamsLibrary.cmake:5 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_ANSI_STREAM_EOF_RESULT" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:323 (INCLUDE)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/vtkTestStreamsLibrary.cmake:22 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_OSTREAM_SUPPORTS_LONG_LONG" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:323 (INCLUDE)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/vtkTestStreamsLibrary.cmake:45 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_ISTREAM_SUPPORTS_LONG_LONG" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:323 (INCLUDE)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMake/VTKParallelCMakeTests.cmake:7 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VTK_HAVE_GETSOCKNAME_WITH_SOCKLEN_T" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:338 (include)
vtkIOCore
vtkIOGeometry
vtkIOImage
vtkMetaIO
vtkfreetype
vtkgl2ps
vtkhdf5
vtklibxml2
vtkpng
vtktiff
CMake Warning (dev) at Utilities/KWSys/vtksys/kwsysPlatformTests.cmake:16 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "KWSYS_CXX_HAS_CSTDIO_COMPILED" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Utilities/KWSys/vtksys/kwsysPlatformTests.cmake:155 (KWSYS_PLATFORM_TEST)
Utilities/KWSys/vtksys/CMakeLists.txt:307 (KWSYS_PLATFORM_CXX_TEST) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Utilities/KWSys/vtksys/kwsysPlatformTests.cmake:63 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "KWSYS_LFS_WORKS" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Utilities/KWSys/vtksys/kwsysPlatformTests.cmake:164 (KWSYS_PLATFORM_TEST_RUN)
Utilities/KWSys/vtksys/CMakeLists.txt:317 (KWSYS_PLATFORM_CXX_TEST_RUN) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at ThirdParty/hdf5/vtkhdf5/ConfigureChecks.cmake:386 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_HAVE_SYS_TIME_GETTIMEOFDAY" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): ThirdParty/hdf5/vtkhdf5/CMakeLists.txt:189 (INCLUDE)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at ThirdParty/hdf5/vtkhdf5/ConfigureChecks.cmake:433 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_TIME_WITH_SYS_TIME" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): ThirdParty/hdf5/vtkhdf5/ConfigureChecks.cmake:511 (HDF5_FUNCTION_TEST)
ThirdParty/hdf5/vtkhdf5/CMakeLists.txt:189 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at ThirdParty/hdf5/vtkhdf5/ConfigureChecks.cmake:648 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_LDOUBLE_TO_INTEGER_ACCURATE" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): ThirdParty/hdf5/vtkhdf5/ConfigureChecks.cmake:670 (H5MiscConversionTest)
ThirdParty/hdf5/vtkhdf5/CMakeLists.txt:189 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at ThirdParty/hdf5/vtkhdf5/ConfigureChecks.cmake:614 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_LDOUBLE_TO_INTEGER_WORKS" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): ThirdParty/hdf5/vtkhdf5/ConfigureChecks.cmake:679 (H5ConversionTests)
ThirdParty/hdf5/vtkhdf5/CMakeLists.txt:189 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at ThirdParty/netcdf/vtknetcdf/CMakeLists.txt:49 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_ST_BLKSIZE" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): ThirdParty/netcdf/vtknetcdf/CMakeLists.txt:134 (C_SOURCE_COMPILES)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at ThirdParty/libxml2/vtklibxml2/libxml2PlatformTests.cmake:2 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_GETADDRINFO_COMPILED" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): ThirdParty/libxml2/vtklibxml2/libxml2PlatformTests.cmake:123 (LIBXML2_PLATFORM_TEST)
Linking CXX shared library ../../lib/libvtkViewsInfovis-6.2.dylib [100%] Built target vtkViewsInfovis [ 24%] No install step for 'VTKv6' [ 25%] Completed 'VTKv6' [ 29%] Built target VTKv6 [ 30%] Performing update step (SVN update) for 'teem' Updating '.': At revision 6222. [ 32%] Performing configure step for 'teem' loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake
CMake Warning (dev) at CMake/TestQnanhibit.cmake:33 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_QNANHIBIT_VALUE" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:80 (TEST_QNANHIBIT)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):
Policy CMP0033 is not set: The export_library_dependencies command should not be called. Run "cmake --help-policy CMP0033" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: teem This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done
-- Enabled ITKTransform, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVNL, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVNLInstantiation, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVTK, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoCore, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoFiltering, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES. -- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
CMake Warning (dev) at Modules/ThirdParty/KWSys/src/KWSys/kwsysPlatformTests.cmake:16 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "KWSYS_CXX_HAS_CSTDIO_COMPILED" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/KWSys/src/KWSys/kwsysPlatformTests.cmake:155 (KWSYS_PLATFORM_TEST)
Modules/ThirdParty/KWSys/src/KWSys/CMakeLists.txt:314 (KWSYS_PLATFORM_CXX_TEST) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/KWSys/src/KWSys/kwsysPlatformTests.cmake:63 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "KWSYS_LFS_WORKS" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/KWSys/src/KWSys/kwsysPlatformTests.cmake:164 (KWSYS_PLATFORM_TEST_RUN)
Modules/ThirdParty/KWSys/src/KWSys/CMakeLists.txt:324 (KWSYS_PLATFORM_CXX_TEST_RUN) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/VNL/src/vxl/config/cmake/config/vxl_config_macros.cmake:15 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VCL_HAS_BOOL" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/VNL/src/vxl/config/cmake/config/CMakeLists.txt:51 (PERFORM_CMAKE_TEST)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/VNL/src/vxl/config/cmake/config/vxl_config_macros.cmake:106 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VCL_HAS_TEMPLATE_SYMBOLS" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/VNL/src/vxl/config/cmake/config/CMakeLists.txt:81 (PERFORM_CMAKE_TEST_RUN)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/VNL/src/vxl/config/cmake/config/vxl_config_macros.cmake:62 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VXL_PIC_COMPATIBLE" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/VNL/src/vxl/config/cmake/config/CMakeLists.txt:136 (PERFORM_CMAKE_TEST_CUSTOM)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/VNL/src/vxl/config/cmake/config/vxl_config_macros.cmake:160 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VCL_CXX_HAS_HEADER_CASSERT" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/VNL/src/vxl/config/cmake/config/CMakeLists.txt:142 (PERFORM_CHECK_HEADER)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/VNL/src/vxl/config/cmake/config/vxl_config_macros.cmake:200 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "VCL_MEMORY_HAS_SHARED_PTR" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/VNL/src/vxl/config/cmake/config/vxl_config_macros.cmake:253 (CHECK_TYPE_EXISTS)
Modules/ThirdParty/VNL/src/vxl/config/cmake/config/CMakeLists.txt:204 (CHECK_TYPE_EXISTS_ZERO) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/Core/Common/CMake/CheckCPPDirective.cmake:10 (if):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_ITK_CPP_FUNCTION" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/Core/Common/CMakeLists.txt:29 (check_cpp_directive_exists)
This warning is for project developers. Use -Wno-dev to suppress it. -- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") -- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a
CMake Warning (dev) at Modules/ThirdParty/HDF5/src/itkhdf5/config/cmake/ConfigureChecks.cmake:456 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_HAVE_SYS_TIME_GETTIMEOFDAY" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/HDF5/src/itkhdf5/CMakeLists.txt:242 (INCLUDE)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/HDF5/src/itkhdf5/config/cmake/ConfigureChecks.cmake:503 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_TIME_WITH_SYS_TIME" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/HDF5/src/itkhdf5/config/cmake/ConfigureChecks.cmake:580 (HDF5_FUNCTION_TEST)
Modules/ThirdParty/HDF5/src/itkhdf5/CMakeLists.txt:242 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/HDF5/src/itkhdf5/config/cmake/ConfigureChecks.cmake:787 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_LDOUBLE_TO_INTEGER_ACCURATE" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/HDF5/src/itkhdf5/config/cmake/ConfigureChecks.cmake:809 (H5MiscConversionTest)
Modules/ThirdParty/HDF5/src/itkhdf5/CMakeLists.txt:242 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at Modules/ThirdParty/HDF5/src/itkhdf5/config/cmake/ConfigureChecks.cmake:753 (IF):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "H5_LDOUBLE_TO_INTEGER_WORKS" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/HDF5/src/itkhdf5/config/cmake/ConfigureChecks.cmake:818 (H5ConversionTests)
Modules/ThirdParty/HDF5/src/itkhdf5/CMakeLists.txt:242 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it. -- Filter ZLIB is ON
CMake Warning (dev) at Modules/ThirdParty/NrrdIO/src/NrrdIO/CMake/TestQnanhibit.cmake:10 (if):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_QNANHIBIT_VALUE" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeLists.txt:39 (test_qnanhibit)
[100%] Built target ITKVideoCore-all [100%] Built target ITKVideoFiltering-all [100%] Built target ITKVideoIO [100%] Built target ITKVideoIO-all [ 44%] No install step for 'ITKv4' [ 45%] Completed 'ITKv4' [ 49%] Built target ITKv4 [ 50%] Performing update step for 'OpenCV' [ 51%] Performing configure step for 'OpenCV' loading initial cache file /.../CIP-build/OpenCV-prefix/tmp/OpenCV-cache.cmake
CMake Warning (dev) at cmake/OpenCVUtils.cmake:279 (if):
Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "APPLE" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): CMakeLists.txt:120 (OCV_OPTION)
-- Could NOT find PythonInterp: Found unsuitable version "2.7.9", but required is at least "3.4" (found /.../CIP-DevelopConda-build/CIPPython-install/bin/python) -- Could NOT find PythonInterp: Found unsuitable version "2.7.9", but required is at least "3.2" (found /.../CIP-DevelopConda-build/CIPPython-install/bin/python) -- Could NOT find Matlab (missing: MATLAB_MEX_SCRIPT MATLAB_INCLUDE_DIRS MATLAB_ROOT_DIR MATLAB_LIBRARIES MATLAB_LIBRARY_DIRS MATLAB_MEXEXT MATLAB_ARCH MATLAB_BIN) -- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core) -- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved! -- Module opencv_shape disabled because opencv_video dependency can't be resolved! -- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved! -- Module opencv_superres disabled because opencv_video dependency can't be resolved! -- Module opencv_ts disabled because opencv_videoio dependency can't be resolved! -- Assume that non-module dependency is available: -framework OpenCL (for module opencv_core)
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_core". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_features2d". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_flann". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_imgcodecs". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_imgproc". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_ml". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_objdetect". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/OpenCVGenPkgconfig.cmake:40 (get_target_property):
Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "opencv_photo". Use the target name directly with add_custom_command, or use the generator expression $<TARGET_FILE>, as appropriate. Call Stack (most recent call first): CMakeLists.txt:576 (include)
-- Tests: NO -- Performance tests: NO -- C/C++ Examples: NO -- -- Install path: /.../CIP-build/OpenCV-install -- -- cvconfig.h is in: /.../CIP-build/OpenCV-build -- ----------------------------------------------------------------- -- -- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: opencv_core opencv_features2d opencv_flann opencv_imgcodecs
from pip._vendor import requests, six
File "/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/pip/_vendor/__init__.py", line 92, in load_module
raise ImportError("No module named '%s'" % (name,))
ImportError: No module named 'pip._vendor.requests'
[ 75%] Completed 'CIPPython'
[ 79%] Built target CIPPython
[ 80%] Performing update step for 'SlicerExecutionModel'
[ 81%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: ModuleDescriptionParser This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done
Linking CXX static library ../../bin/libSegmentLungLobesLib.a [ 33%] Built target SegmentLungLobesLib Linking CXX executable ../../bin/SegmentLungLobes [ 34%] Built target SegmentLungLobes Scanning dependencies of target SegmentLungLobesTest [ 34%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o Linking CXX executable ../Testing/bin/SegmentLungLobesTest [ 34%] Built target SegmentLungLobesTest Scanning dependencies of target ReadDicomWriteTagsLib [ 34%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o
/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( commaLocation != std::string::npos )
~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( newlineLocation != std::string::npos )
~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 34%] Built target ReadDicomWriteTagsLib
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 35%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest
[ 36%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsTest.dir/Testing/ReadDicomWriteTagsTest.cxx.o
Linking CXX executable ../Testing/bin/ReadDicomWriteTagsTest
