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----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleLabelMap2D
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps3D
-- Configuring SEM CLI module: RegisterLabelMaps2D
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/ChestImagingPlatform-build/CIP-build

Build Log line 1237

[ 48%] Built target GenerateLobeSurfaceModelsLib
[ 49%] Built target GenerateLobeSurfaceModels
[ 49%] Built target GenerateLobeSurfaceModelsTest
[ 50%] Built target ClassifyFissureParticlesLib
[ 50%] Built target ClassifyFissureParticles
[ 50%] Built target ClassifyFissureParticlesTest
[ 51%] Built target CropLungLib
[ 51%] Built target CropLung
[ 51%] Built target CropLungTest
[ 51%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModelLib.dir/GenerateModel.cxx.o

/.../ChestImagingPlatform/CommandLineTools/GenerateModel/GenerateModel.cxx:54:27: fatal error: vtkNRRDReader.h: No such file or directory

 #include "vtkNRRDReader.h"
                           ^
compilation terminated.
Linking CXX static library ../../bin/libGenerateModelLib.a

/usr/bin/ar: CMakeFiles/GenerateModelLib.dir/GenerateModel.cxx.o: No such file or directory

[ 52%] Built target GenerateModelLib

gmake[5]: *** No rule to make target `bin/libGenerateModelLib.a', needed by `bin/GenerateModel'.  Stop.

[ 52%] Built target GenerateModel

gmake[5]: *** No rule to make target `bin/libGenerateModelLib.a', needed by `CommandLineTools/Testing/bin/GenerateModelTest'.  Stop.

[ 52%] Built target GenerateModelTest
[ 53%] Built target GenerateImageSubVolumesLib
[ 53%] Built target GenerateImageSubVolumes
[ 53%] Built target GenerateImageSubVolumesTest
[ 54%] Built target GenerateMedianFilteredImageLib
[ 54%] Built target GenerateMedianFilteredImage
[ 54%] Built target GenerateMedianFilteredImageTest
[ 55%] Built target EvaluateLungLobeSegmentationResultsLib
[ 55%] Built target EvaluateLungLobeSegmentationResults
[ 55%] Built target EvaluateLungLobeSegmentationResultsTest

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