CDash : CIP

Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20190724-0400-Nightly (related builds)
Time: 2019-07-24T00:03:43 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
CTest version: ctest-3.9.0

Current Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	0	2
Test	2	0

Previous Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	0	2
Test	2	0

History

Show Build History
Build History Filter

Notes

Add a Note to this Build

Graph

Show Build Graphs

Stage: Update (0 errors, 0 warnings)

Start Time: 2019-07-24T00:03:23 EDT
End Time: 2019-07-24T00:03:24 EDT
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2019-07-24T00:03:24 EDT
End Time: 2019-07-24T00:03:42 EDT
Configure Command: /home/ec2-user/sw/cmake-3.9.0-Linux-x86_64/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output:

--  - C++11
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ExampleCLI
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ComputeAirwayWallFromImages
-- Configuring SEM CLI module: FitBSplineToDeformationField
-- Configuring SEM CLI module: CreateVolumeFromSlices
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: UpdateParticlesData
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python2.7 and flags   -fPIC  -Wno-array-bounds -msse2 
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_example.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/example_pythonCLI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram_emphysema.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramModel.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramMapper.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/data_operator.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/gaussian_noise_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/uniform_affine_2D_transform_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/data_operators/uniform_similarity_3D_transform_with_coords_DO.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/volume_file.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/h5_dataset_store.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/data_augmentor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/h5_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/data/data_processing.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/deep_learning_models_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/metrics_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/network.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/engine.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/logic/utils.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/baseline
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/test_lung_segmentation_dcnn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/lung_segmenter_dcnn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/fissure_phenotypes_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/transfer_particles_region_type_values.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_vasculature_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_fissure_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/biomechanical_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/fissure_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/ct_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/ct_registration_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/lung_segmentation_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/qc_base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/vasculature_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/xml_points_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/body_composition_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/quality_control/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/anterior_vs_posterior_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/rind_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/lung_splitter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/setup.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/merge_particle_files.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/convert_labelmap_to_int.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/biomechanical_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/extract_2D_patches_from_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/vtk_not_empty.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/isotropic_dicom_converter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline/crop_ct_2slices.nrrd
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 2 warnings)

Build command: /home/ec2-user/sw/cmake-3.9.0-Linux-x86_64/bin/cmake --build . --config "Release" -- -i
Start Time: 2019-07-24T00:03:43 EDT
End Time: 2019-07-24T00:06:13 EDT

View Errors Summary

Build Warnings (2)

-- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue.
-- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled MGHIO, requested by Module_MGHIO.
-- Performing Test ITK_PRIVATE_DYNAMIC_CAST - Success
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") 
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a  
-- Filter ZLIB is ON

CMake Warning (dev) at Modules/Remote/MGHIO/CMakeLists.txt:2 (project):

  Policy CMP0048 is not set: project() command manages VERSION variables.
  Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The following variable(s) would be set to empty:

    PROJECT_VERSION
    PROJECT_VERSION_MAJOR
    PROJECT_VERSION_MINOR
    PROJECT_VERSION_PATCH

[ 69%] Built target ModuleDescriptionParser
[ 84%] Built target GenerateCLP
[100%] Built target GenerateCLPLauncher
[ 67%] No install step for 'SlicerExecutionModel'
[ 69%] Completed 'SlicerExecutionModel'
[ 73%] Built target SlicerExecutionModel
[ 75%] Performing update step for 'teem'
[ 76%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake
-- Configuring done

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

View Warnings Summary

Test (95 passed, 2 failed, 0 not run)

View Tests Summary