CDash : CIP

Site Name: ip-172-31-24-227.ec2.internal
Build Name: CIP-release-Linux-3.10.0-123.8.1.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20190708-0400-Nightly (related builds)
Time: 2019-07-08T09:33:22 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.8.1.el7.x86_64
OS Version: #1 SMP Mon Sep 22 19:06:58 UTC 2014
CTest version: ctest-3.9.0

Current Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	2	3
Test	0	35

Previous Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	2	2
Test	0	35

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Stage: Update (0 errors, 0 warnings)

Start Time: 2019-07-08T09:32:47 EDT
End Time: 2019-07-08T09:32:49 EDT
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 1

Configure (0 errors, 0 warnings)

Start Time: 2019-07-08T09:32:50 EDT
End Time: 2019-07-08T09:33:20 EDT
Configure Command: /home/centos/sw/cmake-3.9.0-Linux-x86_64/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/centos/Projects/CIP-release"
Configure Return Value: 0
Configure Output:

--  - C++11
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ExampleCLI
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ComputeAirwayWallFromImages
-- Configuring SEM CLI module: FitBSplineToDeformationField
-- Configuring SEM CLI module: CreateVolumeFromSlices
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: UpdateParticlesData
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in /home/centos/Projects/CIP-release-build/CIPPython-install/bin/python2.7 and flags   -fPIC  -Wno-array-bounds -msse2 
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/tests/test_example.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/example_pythonCLI.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/localHistogramMapper.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/local_histogram_emphysema.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/localHistogramModel.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/volume_file.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/h5_dataset_store.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/data_operators
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/data_operators/uniform_affine_2D_transform_DO.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/data_operators/uniform_similarity_3D_transform_with_coords_DO.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/data_operators/gaussian_noise_DO.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/data_operators/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/data_operators/data_operator.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects/lung_segmenter
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/test_lung_segmentation_dcnn.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/tests/baseline
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/lung_segmenter_dcnn.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/projects/lung_segmenter/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/logic
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/logic/metrics_manager.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/logic/deep_learning_models_manager.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/logic/utils.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/logic/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/logic/network.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/logic/engine.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/data
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/data/h5_manager.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/data/data_processing.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/data/data_augmentor.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/dcnn/data/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/fissure_phenotypes_workflow.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/transfer_particles_region_type_values.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/vessel_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/tests/test_fissure_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/tests/test_vasculature_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/fissure_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/biomechanical_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/ct_qc.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/vasculature_qc.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/body_composition_qc.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/qc_base.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/xml_points_qc.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/lung_segmentation_qc.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/ct_registration_qc.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/quality_control/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/registration
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/registration/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/registration/cip_registration.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/lung_splitter.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/anterior_vs_posterior_partition.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/rind_core_partition.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/convert_labelmap_to_int.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/gco_python
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/gco_python/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/gco_python/setup.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_compute_dice_coefficient.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/isotropic_dicom_converter.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/remap_lm.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/extract_2D_patches_from_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/biomechanical_metrics.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/vtk_not_empty.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/merge_particle_files.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/visualization
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/visualization/tests
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/visualization/display_particles.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /auxvol/CIP-release-build/CIP-build/cip_python/common/tests/baseline/crop_ct_2slices.nrrd
-- Configuring done
-- Generating done
-- Build files have been written to: /auxvol/CIP-release-build/CIP-build

View Configure Summary

Build (2 errors, 3 warnings)

Build command: /home/centos/sw/cmake-3.9.0-Linux-x86_64/bin/cmake --build . --config "Release" -- -i
Start Time: 2019-07-08T09:33:22 EDT
End Time: 2019-07-08T09:41:04 EDT

Requirement already satisfied: funcsigs>=1; python_version < "3.3" in ./CIPPython-install/lib/python2.7/site-packages (from mock>=2.0.0->tensorflow==1.12.0) (1.0.2)
Requirement already satisfied: futures>=3.1.1; python_version < "3" in ./CIPPython-install/lib/python2.7/site-packages (from tensorboard<1.13.0,>=1.12.0->tensorflow==1.12.0) (3.2.0)
Collecting markdown>=2.6.8 (from tensorboard<1.13.0,>=1.12.0->tensorflow==1.12.0)
  Using cached https://files.pythonhosted.org/packages/c0/4e/fd492e91abdc2d2fcb70ef453064d980688762079397f779758e055f6575/Markdown-3.1.1-py2.py3-none-any.whl
Collecting werkzeug>=0.11.10 (from tensorboard<1.13.0,>=1.12.0->tensorflow==1.12.0)
  Using cached https://files.pythonhosted.org/packages/9f/57/92a497e38161ce40606c27a86759c6b92dd34fcdb33f64171ec559257c02/Werkzeug-0.15.4-py2.py3-none-any.whl
Requirement already satisfied: setuptools in ./CIPPython-install/lib/python2.7/site-packages (from protobuf>=3.6.1->tensorflow==1.12.0) (41.0.0)
Requirement already satisfied: h5py in ./CIPPython-install/lib/python2.7/site-packages (from keras-applications>=1.0.6->tensorflow==1.12.0) (2.9.0)
Installing collected packages: keras-preprocessing, astor, backports.weakref, mock, protobuf, grpcio, markdown, werkzeug, tensorboard, gast, termcolor, absl-py, keras-applications, tensorflow
Successfully installed absl-py-0.7.1 astor-0.8.0 backports.weakref-1.0.post1 gast-0.2.2 grpcio-1.22.0 keras-applications-1.0.8 keras-preprocessing-1.1.0 markdown-3.1.1 mock-3.0.5 protobuf-3.8.0 tensorboard-1.12.2 tensorflow-1.12.0 termcolor-1.1.0 werkzeug-0.15.4

gmake[2]: *** No rule to make target `CIPPython-prefix/src/CIPPython-stamp/CIPPython-installnose', needed by `CIPPython-prefix/src/CIPPython-stamp/CIPPython-installsphinx'.  Stop.

[ 88%] Built target CIPPython

gmake[2]: *** No rule to make target `CIPPython-prefix/src/CIPPython-stamp/CIPPython-done', needed by `CIP-prefix/src/CIP-stamp/CIP-configure'.  Stop.

[100%] Built target CIP

View Errors Summary

Build Warnings (3)

[100%] Built target vtkTestingRendering
[100%] Linking CXX shared library ../../lib/libvtkViewsInfovis-8.2.so
[100%] Built target vtkViewsInfovis
[ 25%] No install step for 'VTKv8'
[ 27%] Completed 'VTKv8'
[ 31%] Built target VTKv8
[ 32%] Performing update step for 'teem'
[ 33%] Performing configure step for 'teem'
loading initial cache file /auxvol/CIP-release-build/teem-prefix/tmp/teem-cache-Release.cmake
-- Configuring done

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /auxvol/CIP-release-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

-- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue.
-- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled MGHIO, requested by Module_MGHIO.
-- Performing Test ITK_PRIVATE_DYNAMIC_CAST - Success
-- Found ZLIB: /auxvol/CIP-release-build/zlib-install/lib/libzlib.a (found version "1.2.3") 
-- Found ZLIB: /auxvol/CIP-release-build/zlib-install/lib/libzlib.a  
-- Filter ZLIB is ON

CMake Warning (dev) at Modules/Remote/MGHIO/CMakeLists.txt:2 (project):

  Policy CMP0048 is not set: project() command manages VERSION variables.
  Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The following variable(s) would be set to empty:

    PROJECT_VERSION
    PROJECT_VERSION_MAJOR
    PROJECT_VERSION_MINOR
    PROJECT_VERSION_PATCH

    You currently have a PYTHONPATH environment variable set. This may cause
    unexpected behavior when running the Python interpreter in Miniconda2.
    For best results, please verify that your PYTHONPATH only points to
    directories of packages that are compatible with the Python interpreter
    in Miniconda2: /.../CIP-release-build/CIPPython-install
[ 72%] Performing installnipype step for 'CIPPython'
Collecting package metadata: ...working... done
Solving environment: ...working... done

==> WARNING: A newer version of conda exists. <==

  current version: 4.6.14
  latest version: 4.7.5

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

View Warnings Summary

Test (62 passed, 0 failed, 35 not run)

View Tests Summary