-- Build files have been written to: /.../CIP-build/CIP-build
[ 91%] Performing forcebuild step for 'CIP'
[ 92%] Performing build step for 'CIP'
[ 0%] Copying Resource files
[ 0%] Built target copy-external-files
[ 0%] Built target copy-input-files
[ 2%] Built target CIPUtilities
[ 2%] Built target generateChestConventions
[ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestConventions.cxx.o
/.../CIP/Common/cipChestConventions.cxx: In member function ‘bool cip::ChestConventions::IsFissurePhenotypeName(std::string) const’:
/.../CIP/Common/cipChestConventions.cxx:357:44: error: ‘const class cip::ChestConventionsStatic’ has no member named ‘FissurePhenotypeNames’
for (int i = 0; i < s_ChestConventions.FissurePhenotypeNames.size(); i++) {
^
/.../CIP/Common/cipChestConventions.cxx:358:33: error: ‘const class cip::ChestConventionsStatic’ has no member named ‘FissurePhenotypeNames’
if (!s_ChestConventions.FissurePhenotypeNames[i].compare(pheno)) {
^
/.../CIP/Common/cipChestConventions.cxx: In member function ‘bool cip::ChestConventions::IsPhenotypeName(std::string) const’:
/usr/bin/ar: CMakeFiles/CIPCommon.dir/cipChestConventions.cxx.o: No such file or directory
[ 9%] Built target CIPCommon
[ 10%] Built target CIPIO
running build_ext
skipping '/.../CIP/cip_python/utils/gco_python/gco_python.cpp' Cython extension (up-to-date)
[ 10%] Built target CIP_PYTHON
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipNelderMeadSimplexOptimizerTEST'. Stop.
[ 11%] Built target cipNelderMeadSimplexOptimizerTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPExtractChestLabelMapImageFilterTEST'. Stop.
[ 11%] Built target itkCIPExtractChestLabelMapImageFilterTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipHelperTEST'. Stop.
[ 12%] Built target cipHelperTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipLobeSurfaceModelTEST'. Stop.
[ 12%] Built target cipLobeSurfaceModelTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPMergeChestLabelMapsImageFilterTEST'. Stop.
[ 13%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `IO/Testing/cipChestRegionChestTypeLocationsIOTEST'. Stop.
[ 13%] Built target cipChestRegionChestTypeLocationsIOTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `IO/Testing/cipLobeSurfaceModelIOTEST'. Stop.
[ 13%] Built target cipLobeSurfaceModelIOTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `IO/Testing/cipGeometryTopologyDataIOTEST'. Stop.
[ 13%] Built target cipGeometryTopologyDataIOTEST
[ 14%] Built target ExampleCLILib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ExampleCLI'. Stop.
[ 14%] Built target ExampleCLI
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/ExampleCLITest'. Stop.
[ 14%] Built target ExampleCLITest
[ 14%] Built target ConvertDicomLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ConvertDicom'. Stop.
[ 15%] Built target ConvertDicom
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/ConvertDicomTest'. Stop.
[ 15%] Built target ConvertDicomTest
[ 16%] Built target MergeParticleDataSetsLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/MergeParticleDataSets'. Stop.
[ 16%] Built target MergeParticleDataSets
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/MergeParticleDataSetsTest'. Stop.
[ 16%] Built target MergeParticleDataSetsTest
[ 17%] Built target RemoveParticlesFromParticlesDataSetLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RemoveParticlesFromParticlesDataSet'. Stop.
[ 17%] Built target RemoveParticlesFromParticlesDataSet
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/RemoveParticlesFromParticlesDataSetTest'. Stop.
[ 17%] Built target RemoveParticlesFromParticlesDataSetTest
[ 18%] Built target ExtractParticlesFromChestRegionChestTypeLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/ExtractParticlesFromChestRegionChestTypeTest'. Stop.
[ 18%] Built target ExtractParticlesFromChestRegionChestTypeTest
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ExtractParticlesFromChestRegionChestType'. Stop.
[ 18%] Built target ExtractParticlesFromChestRegionChestType
[ 19%] Built target GenerateOtsuLungCastLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateOtsuLungCast'. Stop.
[ 19%] Built target GenerateOtsuLungCast
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/GenerateOtsuLungCastTest'. Stop.
[ 19%] Built target GenerateOtsuLungCastTest
[ 20%] Built target GenerateAtlasConvexHullLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateAtlasConvexHull'. Stop.
[ 20%] Built target GenerateAtlasConvexHull
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/GenerateAtlasConvexHullTest'. Stop.
[ 20%] Built target GenerateAtlasConvexHullTest
[ 21%] Built target RegisterLungAtlasLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/RegisterLungAtlasTest'. Stop.
[ 21%] Built target RegisterLungAtlasTest
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RegisterLungAtlas'. Stop.
[ 21%] Built target RegisterLungAtlas
[ 21%] Built target ResampleLabelMapLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ResampleLabelMap'. Stop.
[ 22%] Built target ResampleLabelMap
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/ResampleLabelMapTest'. Stop.
[ 22%] Built target ResampleLabelMapTest
[ 22%] Built target RescaleLabelMapLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RescaleLabelMap'. Stop.
[ 23%] Built target RescaleLabelMap
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/RescaleLabelMapTest'. Stop.
[ 23%] Built target RescaleLabelMapTest
[ 24%] Built target ResampleCTLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ResampleCT'. Stop.
[ 24%] Built target ResampleCT
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/ResampleCTTest'. Stop.
[ 24%] Built target ResampleCTTest
[ 25%] Built target QualityControlLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/QualityControl'. Stop.
[ 25%] Built target QualityControl
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/QualityControlTest'. Stop.
[ 25%] Built target QualityControlTest
[ 26%] Built target RemoveChestTypeFromLabelMapUsingParticlesLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/RemoveChestTypeFromLabelMapUsingParticlesTest'. Stop.
[ 26%] Built target RemoveChestTypeFromLabelMapUsingParticlesTest
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RemoveChestTypeFromLabelMapUsingParticles'. Stop.
[ 26%] Built target RemoveChestTypeFromLabelMapUsingParticles
[ 26%] Built target SegmentLungLobesLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/SegmentLungLobes'. Stop.
[ 27%] Built target SegmentLungLobes
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/SegmentLungLobesTest'. Stop.
[ 27%] Built target SegmentLungLobesTest
[ 27%] Built target ReadDicomWriteTagsLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ReadDicomWriteTags'. Stop.
[ 28%] Built target ReadDicomWriteTags
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/ReadDicomWriteTagsTest'. Stop.
[ 28%] Built target ReadDicomWriteTagsTest
[ 28%] Built target SplitLeftLungRightLungLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/SplitLeftLungRightLung'. Stop.
[ 29%] Built target SplitLeftLungRightLung
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/SplitLeftLungRightLungTest'. Stop.
[ 30%] Built target SplitLeftLungRightLungTest
[ 31%] Built target ExtractChestLabelMapLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ExtractChestLabelMap'. Stop.
[ 31%] Built target ExtractChestLabelMap
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/ExtractChestLabelMapTest'. Stop.
[ 31%] Built target ExtractChestLabelMapTest
[ 32%] Built target LabelParticlesByChestRegionChestTypeLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/LabelParticlesByChestRegionChestTypeTest'. Stop.
[ 32%] Built target LabelParticlesByChestRegionChestTypeTest
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/LabelParticlesByChestRegionChestType'. Stop.
[ 32%] Built target LabelParticlesByChestRegionChestType
[ 32%] Built target GenerateStenciledLabelMapFromParticlesLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateStenciledLabelMapFromParticles'. Stop.
[ 33%] Built target GenerateStenciledLabelMapFromParticles
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/GenerateStenciledLabelMapFromParticlesTest'. Stop.
[ 33%] Built target GenerateStenciledLabelMapFromParticlesTest
[ 34%] Built target GenerateDistanceMapFromLabelMapLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateDistanceMapFromLabelMap'. Stop.
[ 34%] Built target GenerateDistanceMapFromLabelMap
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `CommandLineTools/Testing/bin/GenerateDistanceMapFromLabelMapTest'. Stop.
[ 34%] Built target GenerateDistanceMapFromLabelMapTest
[ 34%] Built target FilterVesselParticleDataLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/FilterVesselParticleData'. Stop.
The maximum number of reported warnings or errors has been reached!!!
[ 42%] Performing build step for 'SlicerExecutionModel'
[ 69%] Built target ModuleDescriptionParser
[ 84%] Built target GenerateCLP
[100%] Built target GenerateCLPLauncher
[ 43%] No install step for 'SlicerExecutionModel'
[ 44%] Completed 'SlicerExecutionModel'
[ 48%] Built target SlicerExecutionModel
[ 49%] Performing update step for 'teem'
[ 50%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake
CMake Warning (dev) at CMakeLists.txt:555 (install):
Policy CMP0062 is not set: Disallow install() of export() result. Run
"cmake --help-policy CMP0062" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The file
/.../CIP-build/teem-build/TeemLibraryDepends.cmake
was generated by the export() command. It should not be installed with the
install() command. Use the install(EXPORT) mechanism instead. See the
[ 59%] Performing update step for 'CIPPython'
Current branch master is up to date.
[ 60%] No configure step for 'CIPPython'
[ 61%] No build step for 'CIPPython'
[ 62%] Performing install step for 'CIPPython'
/.../CIP-build/CIPPython-install already exists. Miniconda will not be installed
[ 63%] Performing installtensorflow step for 'CIPPython'
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
Requirement already satisfied: pyyaml in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: six>=1.9.0 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: scipy>=0.14 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: numpy>=1.9.1 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
You are using pip version 9.0.1, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 66%] Performing installnipype step for 'CIPPython'
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.
current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.
You are using pip version 9.0.1, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 72%] Performing installnibabel step for 'CIPPython'
Requirement already satisfied: nibabel in ./CIPPython-install/lib/python2.7/site-packages
You are using pip version 9.0.1, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 73%] Performing installnumpy step for 'CIPPython'
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.11
Please update conda by running
$ conda update -n base conda
## Package Plan ##
Show Build Graphs
