Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-17.7.0-x86_64-incr-SL-ON (view notes)
Stamp: 20181020-0400-Nightly (related builds)
Time: 2018-10-20T23:01:52 EDT
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.13.6
OS Version: 17G65
CTest version: ctest-3.5.0-rc1

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Stage: Update (0 errors, 0 warnings)

Start Time: 2018-10-20T23:01:16 EDT
End Time: 2018-10-20T23:01:16 EDT
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2018-10-20T23:01:17 EDT
End Time: 2018-10-20T23:01:47 EDT
Configure Command: /Applications/CMake.app/Contents/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ExampleCLI
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ComputeAirwayWallFromImages
-- Configuring SEM CLI module: FitBSplineToDeformationField
-- Configuring SEM CLI module: CreateVolumeFromSlices
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in /Users/acil-user/Projects/CIP-build/CIPPython-install/bin/python2.7 and flags   -fPIC  
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/example_pythonCLI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_example.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram_emphysema.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramModel.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramMapper.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/lung_segmenter_dcnn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/metrics.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/tests/test_lung_segmentation_dcnn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/tests/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/tests/baseline
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/utils.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/deep_learning_models_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/transfer_particles_region_type_values.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/biomechanical_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_vasculature_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/lung_segmentation_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/vasculature_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/body_composition_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/xml_points_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/qc_base.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_registration_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/rind_core_partition.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/anterior_vs_posterior_partition.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/lung_splitter.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/biomechanical_metrics.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/merge_particle_files.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_compute_dice_coefficient.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/setup.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/extract_2D_patches_from_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/convert_labelmap_to_int.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests/baseline/crop_ct_2slices.nrrd
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/tests/baseline
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/dcnn/tests/baseline/crop_ct_2slices_dcnnLungSegmentationLabelmap.nrrd
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (50 errors, 17 warnings)

Build command: /Applications/CMake.app/Contents/bin/cmake --build . --config "Release" -- -i
Start Time: 2018-10-20T23:01:52 EDT
End Time: 2018-10-20T23:22:04 EDT

Build Log line 1278


  File: VTKv8/ThirdParty/expat/vtkexpat/lib/xmlparse.c
  Line: 12 
[ 21%] Built target vtkFiltersGeneralObjects
[ 22%] Built target vtkFiltersGeometryObjects
[ 23%] Built target vtkFiltersSourcesObjects
[ 23%] Built target vtkCommonColorObjects
[ 27%] Built target vtkRenderingCoreObjects
[ 28%] Built target vtkImagingCoreObjects
[ 28%] Built target vtklz4
[ 29%] Built target vtkzlib
[ 30%] Built target vtkIOCoreObjects
[ 30%] Building C object ThirdParty/expat/vtkexpat/CMakeFiles/vtkexpat.dir/lib/xmlparse.c.o

/.../CIP-build/VTKv8/ThirdParty/expat/vtkexpat/lib/xmlparse.c:12:10: fatal error: 'string.h' file not found
#include <string.h>                     /* memset(), memcpy() */
         ^
1 error generated.
[ 30%] Linking C shared library ../../../lib/libvtkexpat-8.1.dylib

clang: error: no such file or directory: 'CMakeFiles/vtkexpat.dir/lib/xmlparse.c.o'
[ 30%] Built target vtkexpat
[ 30%] Built target vtkIOXMLParserObjects
[ 32%] Built target vtkIOXMLObjects
[ 33%] Built target vtkRenderingVolumeObjects
[ 33%] Built target verdict
[ 33%] Built target vtkFiltersVerdictObjects
[ 34%] Built target vtkalglib
[ 35%] Built target vtkImagingFourierObjects
[ 36%] Built target vtkFiltersStatisticsObjects
[ 36%] Built target vtkFiltersExtractionObjects
Build Log line 1326


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
[ 40%] Built target vtkmetaio
[ 42%] Built target vtkjpeg
[ 43%] Built target vtkpng
[ 44%] Built target vtktiff
[ 45%] Built target vtkIOImageObjects
[ 46%] Built target vtkIOLegacyObjects
[ 46%] Built target vtkIOEnSightObjects
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5detect.c:57:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Linking C executable ../../../../bin/vtkH5detect

clang: error: no such file or directory: 'CMakeFiles/H5detect.dir/H5detect.c.o'
[ 46%] Built target H5detect
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o

Build Log line 1334


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5make_libsettings.c
  Line: 44 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5make_libsettings.c:44:10: fatal error: 'stdio.h' file not found
#include <stdio.h>
         ^
1 error generated.
[ 46%] Linking C executable ../../../../bin/vtkH5make_libsettings

clang: error: no such file or directory: 'CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o'
[ 46%] Built target H5make_libsettings
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5.c:24:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1344


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5checksum.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5checksum.c:35:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1351


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5dbg.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5dbg.c:34:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1358


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5system.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5system.c:35:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1365


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5timer.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5timer.c:35:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1372


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5trace.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5trace.c:36:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1379


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5A.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5A.c:30:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1386


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Abtree2.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Abtree2.c:37:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1393


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Adense.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Adense.c:39:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1400


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Adeprec.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Adeprec.c:44:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1407


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Aint.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Aint.c:38:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1414


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Atest.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Atest.c:38:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1421


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5AC.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5AC.c:41:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1428


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 46%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B.c:106:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1435


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B2.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B2.c:41:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1442


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B2cache.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B2cache.c:37:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1449


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B2dbg.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B2dbg.c:36:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1456


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B2hdr.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B2hdr.c:36:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1463


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B2int.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B2int.c:36:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1470


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B2stat.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B2stat.c:33:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1477


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5B2test.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5B2test.c:35:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1484


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Bcache.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Bcache.c:37:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1491


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Bdbg.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Bdbg.c:37:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1498


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5D.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5D.c:29:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1505


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dcompact.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dcompact.c:34:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1512


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dbtree.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dbtree.c:35:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1519


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dchunk.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dchunk.c:53:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1526


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dcontig.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dcontig.c:36:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1533


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Ddbg.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Ddbg.c:29:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1540


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Ddeprec.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Ddeprec.c:43:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1547


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Defl.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Defl.c:31:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1554


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dfill.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dfill.c:36:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1561


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dint.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dint.c:29:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1568


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dio.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dio.c:26:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1575


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dlayout.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dlayout.c:26:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1582


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dmpio.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dmpio.c:36:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1589


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Doh.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Doh.c:27:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1596


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dscatgath.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dscatgath.c:26:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1603


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dselect.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dselect.c:32:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1610


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Dtest.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Dtest.c:33:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1617


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5E.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5E.c:57:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1624


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Edeprec.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Edeprec.c:43:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1631


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Eint.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Eint.c:40:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1638


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5F.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5F.c:29:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:

Build Log line 1645


  File: VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h
  Line: 42 
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Faccum.c.o
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5Faccum.c:39:
In file included from /.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5private.h:37:
/.../CIP-build/VTKv8/ThirdParty/hdf5/vtkhdf5/src/H5public.h:42:10: fatal error: 'sys/types.h' file not found
#include <sys/types.h>
         ^
1 error generated.
The maximum number of reported warnings or errors has been reached!!!

View Errors Summary


Build Warnings (17)
[ 10%] Performing update step for 'CIPPython'
Current branch master is up to date.
[ 12%] No configure step for 'CIPPython'
[ 13%] No build step for 'CIPPython'
[ 14%] Performing install step for 'CIPPython'
/.../CIP-build/CIPPython-install already exists. Miniconda will not be installed
[ 15%] Performing installtensorflow step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



## Package Plan ##
Requirement already satisfied: scipy>=0.14 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: numpy>=1.9.1 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: pyyaml in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
Requirement already satisfied: six>=1.9.0 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8)
You are using pip version 9.0.1, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 18%] Performing installnipype step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 19%] Performing installnetworkx step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 20%] Performing installscikit-image step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
You are using pip version 9.0.1, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 24%] Performing installnibabel step for 'CIPPython'
Requirement already satisfied: nibabel in ./CIPPython-install/lib/python2.7/site-packages
You are using pip version 9.0.1, however version 18.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
[ 25%] Performing installnumpy step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



## Package Plan ##
    certifi:         2018.10.15-py27_1000  conda-forge --> 2018.10.15-py27_0
    openssl:         1.0.2p-h470a237_1     conda-forge --> 1.0.2p-h1de35cc_0

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ 26%] Performing installcython step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 27%] Performing installscipy step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 28%] Performing installvtk step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 30%] Performing installpandas step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 31%] Performing installnose step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 32%] Performing installsphinx step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 33%] Performing installsimpleitk step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 34%] Performing installxml step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[ 36%] Performing installscikit-learn step for 'CIPPython'
Solving environment: ...working... done



==> WARNING: A newer version of conda exists. <==
  current version: 4.4.10
  latest version: 4.5.11

Please update conda by running

    $ conda update -n base conda



# All requested packages already installed.
[100%] Built target vtkIOTecplotTable
[100%] Built target vtkInfovisBoostGraphAlgorithms
[100%] Built target vtkTestingRendering
[100%] Built target vtkViewsInfovis
[ 55%] No install step for 'VTKv8'
[ 56%] Completed 'VTKv8'
[ 60%] Built target VTKv8
[ 61%] Performing update step for 'teem'
[ 62%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake

CMake Warning (dev) at CMakeLists.txt:555 (install):
  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the
  cmake-packages(7) manual for more.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done

CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

[100%] Built target MGHIO
[100%] Built target MGHIO-all
[ 74%] No install step for 'ITKv4'
[ 75%] Completed 'ITKv4'
[ 79%] Built target ITKv4
[ 80%] Performing update step for 'SlicerExecutionModel'
[ 81%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache-Release.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.


View Warnings Summary


Test (93  passed, 2 failed, 0 not run)
 
View Tests Summary