Wednesday, August 12 2026 01:56:49
CIP
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Show Build Graphs----------- ENTRY ------------ ----------- PHASE 2 ------------ Configuring CIP... -- Using Infovis Boost ----------- DONE ------------ Appending new list -- Configuring SEM CLI module: ExampleCLI -- Configuring SEM CLI module: ConvertDicom -- Configuring SEM CLI module: MergeParticleDataSets -- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet -- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType -- Configuring SEM CLI module: GenerateOtsuLungCast -- Configuring SEM CLI module: GenerateAtlasConvexHull -- Configuring SEM CLI module: RegisterLungAtlas -- Configuring SEM CLI module: ResampleLabelMap -- Configuring SEM CLI module: RescaleLabelMap -- Configuring CIP -- Configuring SEM CLI module: ResampleCT -- Configuring SEM CLI module: QualityControl -- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles -- Configuring SEM CLI module: SegmentLungLobes -- Configuring SEM CLI module: ReadDicomWriteTags -- Configuring SEM CLI module: SplitLeftLungRightLung -- Configuring SEM CLI module: ExtractChestLabelMap -- Configuring SEM CLI module: LabelParticlesByChestRegionChestType -- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles -- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap -- Configuring SEM CLI module: FilterVesselParticleData -- Configuring SEM CLI module: FilterAirwayParticleData -- Configuring SEM CLI module: ReadNRRDsWriteVTK -- Configuring SEM CLI module: ReadVTKWriteNRRDs -- Configuring SEM CLI module: ComputeCrossSectionalArea -- Configuring SEM CLI module: ComputeIntensityStatistics -- Configuring SEM CLI module: FilterFissureParticleData -- Configuring SEM CLI module: GenerateLobeSurfaceModels -- Configuring SEM CLI module: ClassifyFissureParticles -- Configuring SEM CLI module: CropLung -- Configuring SEM CLI module: GenerateModel -- Configuring SEM CLI module: GenerateImageSubVolumes -- Configuring SEM CLI module: GenerateMedianFilteredImage -- Configuring SEM CLI module: FindPatchMatch -- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints -- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults -- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType -- Configuring SEM CLI module: GenerateParenchymaPhenotypes -- Configuring SEM CLI module: ComputeDistanceMap -- Configuring SEM CLI module: PerturbParticles -- Configuring SEM CLI module: ReadWriteRegionAndTypePoints -- Configuring SEM CLI module: PerformMorphological -- Configuring SEM CLI module: GenerateOverlayImages -- Configuring SEM CLI module: GetTransformationSimilarityMetric -- Configuring SEM CLI module: GetTransformationKappa2D -- Configuring SEM CLI module: GetTransformationKappa -- Configuring SEM CLI module: ReadWriteImageData -- Configuring SEM CLI module: GetStructuresInLabelMap -- Configuring SEM CLI module: GeneratePartialLungLabelMap -- Configuring SEM CLI module: ReadVidaWriteCIP -- Configuring SEM CLI module: RegisterLabelMaps -- Configuring SEM CLI module: RegisterCT -- Configuring SEM CLI module: MergeChestLabelMaps -- Configuring SEM CLI module: MaskOutLabelMapStructures -- Configuring SEM CLI module: ComputeFeatureStrength -- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints -- Configuring SEM CLI module: GenerateSimpleLungMask -- Configuring SEM CLI module: GenerateBinaryThinning3D -- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue -- Configuring SEM CLI module: FilterConnectedComponents -- Configuring SEM CLI module: EnhanceFissuresInImage -- Configuring SEM CLI module: ComputeFissureFeatureVectors -- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData -- Configuring SEM CLI module: GenerateLesionSegmentation -- Configuring SEM CLI module: RemapLabelMap -- Configuring SEM CLI module: GenerateNLMFilteredImage -- Configuring SEM CLI module: ComputeAirwayWallFromParticles -- Configuring SEM CLI module: RegionTypeLocationsToROIVolume -- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap -- Configuring SEM CLI module: ExecuteSystemCommand -- Configuring SEM CLI module: GraphCutsOptimization -- Configuring SEM CLI module: SegmentLungAirways -- Configuring SEM CLI module: ComputeStrainFromDeformationField -- Configuring SEM CLI module: ComputeAirwayWallFromImages -- Configuring SEM CLI module: FitBSplineToDeformationField -- Configuring SEM CLI module: CreateVolumeFromSlices -- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles -- Configuring SEM CLI module: LabelAirwayParticlesByGeneration -- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/__init__.py Wrapping GraphCutsOptimization with Python in /PHShome/jo780/Projects/CIP-build-4.9.2/CIPPython-install/bin/python2.7 and flags -fPIC -msse2 -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/cipChestConventionsXmlParser.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/deep_learning_models_manager.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/__pycache__ -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/dcnn_models_tmp -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/dcnn_models_tmp/lung_segmentation -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/tests -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/tests/test_geometry_topology_data.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/tests/baseline -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/tests/test_example.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/chest_conventions_static.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/paths.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/example_pythonCLI.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/geometry_topology_data.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/anatomic_structures_manager.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/chest_conventions.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/__init__.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/classification -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/classification/tests -- Up-to-date: 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/PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/gaussian_rician.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/grid_segmenter.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/lung_splitter.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/nodule_segmenter.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/pectoralis_segmentor.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/register_tobase_get_closest.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/rind_vs_core_partition.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/segmentation/slic_segmenter.py -- 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/PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/__init__.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/anonymize_dicom.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/apply_label_from_classification.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/biomechanical_metrics.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/cluster_particles.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/convert_labelmap_to_int.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/extract_2D_patches_from_particles.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/gco_python -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/gco_python/__init__.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/gco_python/setup.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/generate_CLIs_description.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/get_closest_cases.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/interpolate_volume.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/visualization -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/visualization/tests -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/visualization/__init__.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/visualization/display_particles.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/visualization/display_particles_volume.py -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/tests/baseline -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/common/tests/baseline/crop_ct_2slices.nrrd -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/dcnn/tests/baseline -- Up-to-date: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build/cip_python/dcnn/tests/baseline/crop_ct_2slices_dcnnLungSegmentationLabelmap.nrrd -- Configuring done -- Generating done -- Build files have been written to: /PHShome/jo780/Projects/CIP-build-4.9.2/CIP-build
[ 4%] Performing update step for 'CIPPython' Current branch master is up to date. [ 6%] No configure step for 'CIPPython' [ 7%] No build step for 'CIPPython' [ 8%] Performing install step for 'CIPPython' /.../CIP-build-4.9.2/CIPPython-install already exists. Miniconda will not be installed [ 9%] Performing installtensorflow step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.5
Please update conda by running
$ conda update -n base conda
certifi 2018.4.16: | 0% certifi 2018.4.16: 8 | 8% certifi 2018.4.16: #######6 | 77% certifi 2018.4.16: ########## | 100%
Requirement already satisfied: pyyaml in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) Requirement already satisfied: six>=1.9.0 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) Requirement already satisfied: scipy>=0.14 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) Requirement already satisfied: numpy>=1.9.1 in ./CIPPython-install/lib/python2.7/site-packages (from keras==2.0.8) You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [ 12%] Performing installnipype step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.5
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 13%] Performing installnetworkx step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.5
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 14%] Performing installscikit-image step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.5
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [ 18%] Performing installnibabel step for 'CIPPython' Requirement already satisfied: nibabel in ./CIPPython-install/lib/python2.7/site-packages You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [ 19%] Performing installnumpy step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
certifi 2018.4.16: | 0% certifi 2018.4.16: 8 | 8% certifi 2018.4.16: ########1 | 82% certifi 2018.4.16: ########## | 100%
Downloading and Extracting Packages Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ 20%] Performing installcython step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 21%] Performing installscipy step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 22%] Performing installvtk step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 24%] Performing installpandas step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 25%] Performing installnose step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 26%] Performing installsphinx step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 27%] Performing installsimpleitk step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 28%] Performing installxml step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.[ 30%] Performing installscikit-learn step for 'CIPPython' Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.4.10
latest version: 4.5.4
Please update conda by running
$ conda update -n base conda
# All requested packages already installed.common.mkdir bin.v2/libs/coroutine
common.mkdir bin.v2/libs/coroutine/build
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/detail
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/detail/coroutine_context.o
In file included from ./boost/coroutine/detail/coroutine_context.hpp:16:0,
from libs/coroutine/src/detail/coroutine_context.cpp:7:
./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]
# warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/exceptions.o
In file included from ./boost/coroutine/exceptions.hpp:19:0,
from libs/coroutine/src/exceptions.cpp:7:
./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]
# warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
^
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/posix
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/posix/stack_traits.o
In file included from ./boost/coroutine/stack_traits.hpp:14:0,
from libs/coroutine/src/posix/stack_traits.cpp:7:
./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]
# warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
^
gcc.archive bin.v2/libs/coroutine/build/gcc-4.9.2/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_coroutine.a
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static/threading-multi/noop.o
gcc.archive bin.v2/libs/stacktrace/build/gcc-4.9.2/release/link-static/threading-multi/libboost_stacktrace_noop.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_stacktrace_noop.aIn file included from ./boost/preprocessor/iteration/detail/iter/forward1.hpp:47:0,
from ./boost/type_erasure/detail/adapt_to_vtable.hpp:268,
from ./boost/type_erasure/call.hpp:33,
from ./boost/type_erasure/constructible.hpp:22,
from ./boost/type_erasure/builtin.hpp:17,
from ./boost/type_erasure/detail/normalize.hpp:34,
from ./boost/type_erasure/detail/check_map.hpp:24,
from ./boost/type_erasure/register_binding.hpp:14,
from libs/type_erasure/src/dynamic_binding.cpp:13:
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static R boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, R()>::value()’:
./boost/type_erasure/detail/adapt_to_vtable.hpp:315:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]
> traits;
^
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static boost::type_erasure::detail::storage boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, boost::type_erasure::detail::storage()>::value()’:
./boost/type_erasure/detail/adapt_to_vtable.hpp:332:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]
> traits;
^
gcc.archive bin.v2/libs/type_erasure/build/gcc-4.9.2/release/link-static/threading-multi/libboost_type_erasure.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_type_erasure.a
common.mkdir bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi
gcc.compile.c bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/alloc_lib.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/dlmalloc.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/global_resource.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/monotonic_buffer_resource.o
gcc.compile.c++ bin.v2/libs/container/build/gcc-4.9.2/release/threading-multi/pool_resource.ocommon.mkdir bin.v2/libs/context/build/gcc-4.9.2/release/threading-multi/posix
gcc.compile.c++ bin.v2/libs/context/build/gcc-4.9.2/release/threading-multi/posix/stack_traits.o
gcc.link.dll bin.v2/libs/context/build/gcc-4.9.2/release/threading-multi/libboost_context.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_context.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_context.so
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/detail
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/detail/coroutine_context.o
In file included from ./boost/coroutine/detail/coroutine_context.hpp:16:0,
from libs/coroutine/src/detail/coroutine_context.cpp:7:
./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]
# warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/exceptions.o
In file included from ./boost/coroutine/exceptions.hpp:19:0,
from libs/coroutine/src/exceptions.cpp:7:
./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]
# warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
^
common.mkdir bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/posix
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/posix/stack_traits.o
In file included from ./boost/coroutine/stack_traits.hpp:14:0,
from libs/coroutine/src/posix/stack_traits.cpp:7:
./boost/coroutine/detail/config.hpp:17:4: warning: #warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING." [-Wcpp]
# warning "Boost.Coroutine is now deprecated. Please switch to Boost.Coroutine2. To disable this warning message, define BOOST_COROUTINES_NO_DEPRECATION_WARNING."
^
gcc.link.dll bin.v2/libs/coroutine/build/gcc-4.9.2/release/threading-multi/libboost_coroutine.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_coroutine.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_coroutine.so
common.mkdir bin.v2/libs/stacktrace/build/gcc-4.9.2/release/threading-multi
gcc.compile.c++ bin.v2/libs/stacktrace/build/gcc-4.9.2/release/threading-multi/noop.o
gcc.link.dll bin.v2/libs/stacktrace/build/gcc-4.9.2/release/threading-multi/libboost_stacktrace_noop.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_stacktrace_noop.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_stacktrace_noop.soIn file included from ./boost/preprocessor/iteration/detail/iter/forward1.hpp:47:0,
from ./boost/type_erasure/detail/adapt_to_vtable.hpp:268,
from ./boost/type_erasure/call.hpp:33,
from ./boost/type_erasure/constructible.hpp:22,
from ./boost/type_erasure/builtin.hpp:17,
from ./boost/type_erasure/detail/normalize.hpp:34,
from ./boost/type_erasure/detail/check_map.hpp:24,
from ./boost/type_erasure/register_binding.hpp:14,
from libs/type_erasure/src/dynamic_binding.cpp:13:
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static R boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, R()>::value()’:
./boost/type_erasure/detail/adapt_to_vtable.hpp:315:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]
> traits;
^
./boost/type_erasure/detail/adapt_to_vtable.hpp: In static member function ‘static boost::type_erasure::detail::storage boost::type_erasure::detail::vtable_adapter<PrimitiveConcept, boost::type_erasure::detail::storage()>::value()’:
./boost/type_erasure/detail/adapt_to_vtable.hpp:332:11: warning: typedef ‘traits’ locally defined but not used [-Wunused-local-typedefs]
> traits;
^
gcc.link.dll bin.v2/libs/type_erasure/build/gcc-4.9.2/release/threading-multi/libboost_type_erasure.so.1.65.1
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_type_erasure.so.1.65.1
ln-UNIX /.../CIP-build-4.9.2/Boost-install/lib/libboost_type_erasure.so
common.mkdir bin.v2/libs/system/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/system/build/gcc-4.9.2/release/link-static/threading-multi
gcc.compile.c++ bin.v2/libs/system/build/gcc-4.9.2/release/link-static/threading-multi/error_code.o
gcc.archive bin.v2/libs/system/build/gcc-4.9.2/release/link-static/threading-multi/libboost_system.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_system.agcc.archive bin.v2/libs/chrono/build/gcc-4.9.2/release/link-static/threading-multi/libboost_chrono.a common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_chrono.a common.mkdir bin.v2/libs/timer common.mkdir bin.v2/libs/timer/build common.mkdir bin.v2/libs/timer/build/gcc-4.9.2 common.mkdir bin.v2/libs/timer/build/gcc-4.9.2/release common.mkdir bin.v2/libs/timer/build/gcc-4.9.2/release/link-static common.mkdir bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi gcc.compile.c++ bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi/auto_timers_construction.o In file included from libs/timer/src/auto_timers_construction.cpp:23:0:
./boost/timer/timer.hpp:44:43: warning: use of C++11 long long integer constant [-Wlong-long]
void clear() { wall = user = system = 0LL; }
^
gcc.compile.c++ bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi/cpu_timer.o
In file included from libs/timer/src/cpu_timer.cpp:16:0:
./boost/timer/timer.hpp:44:43: warning: use of C++11 long long integer constant [-Wlong-long]
void clear() { wall = user = system = 0LL; }
^
libs/timer/src/cpu_timer.cpp:108:23: warning: use of C++11 long long integer constant [-Wlong-long]
tick_factor = 1000000000LL / tick_factor; // compute factor
^
gcc.archive bin.v2/libs/timer/build/gcc-4.9.2/release/link-static/threading-multi/libboost_timer.a
common.copy /.../CIP-build-4.9.2/Boost-install/lib/libboost_timer.a
common.mkdir bin.v2/libs/test
common.mkdir bin.v2/libs/test/build
common.mkdir bin.v2/libs/test/build/gcc-4.9.2
common.mkdir bin.v2/libs/test/build/gcc-4.9.2/release
common.mkdir bin.v2/libs/test/build/gcc-4.9.2/release/link-static
common.mkdir bin.v2/libs/test/build/gcc-4.9.2/release/link-static/threading-multi[ 69%] Completed 'ITKv4' [ 69%] Built target ITKv4 Scanning dependencies of target teem [ 71%] Creating directories for 'teem' [ 72%] Performing download step (git clone) for 'teem' -- Avoiding repeated git clone, stamp file is up to date: '/.../CIP-build-4.9.2/teem-prefix/src/teem-stamp/teem-gitclone-lastrun.txt' [ 73%] No patch step for 'teem' [ 74%] Performing update step for 'teem' [ 75%] Performing configure step for 'teem' loading initial cache file /.../CIP-build-4.9.2/teem-prefix/tmp/teem-cache-Release.cmake
CMake Warning (dev) at CMakeLists.txt:555 (install):
Policy CMP0062 is not set: Disallow install() of export() result. Run
"cmake --help-policy CMP0062" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The file
/.../CIP-build-4.9.2/teem-build/TeemLibraryDepends.cmake
was generated by the export() command. It should not be installed with the
install() command. Use the install(EXPORT) mechanism instead. See the
