CDash : CIP

Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20180525-0400-Nightly (related builds)
Time: 2018-05-25T23:02:40 EDT
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F1911
CTest version: ctest-3.5.0-rc1

Current Build
Stage	Errors	Warnings
Update	0	0
Configure	1	0
Build	50	2
Test	124	0

Previous Build
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Update	0	0
Configure	0	0
Build	0	3
Test	2	0

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Stage: Update (0 errors, 0 warnings)

Start Time: 2018-05-25T23:02:07 EDT
End Time: 2018-05-25T23:02:08 EDT
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (1 errors, 0 warnings)

Start Time: 2018-05-25T23:02:08 EDT
End Time: 2018-05-25T23:02:38 EDT
Configure Command: /Applications/CMake.app/Contents/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 1
Configure Output:

----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ExampleCLI
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ComputeAirwayWallFromImages
-- Configuring SEM CLI module: FitBSplineToDeformationField
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in /Users/acil-user/Projects/CIP-build/CIPPython-install/bin/python2.7 and flags   -fPIC  
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/data
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/data/baseline
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/deep_learning_models_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/example_pythonCLI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_example_pythonCLI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/data/baseline
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/common/data/baseline/crop_ct_smooth.nrrd
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram_emphysema.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramMapper.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/localHistogramModel.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/body_composition_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/transfer_particles_region_type_values.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/biomechanical_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/laa_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_laa_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_vasculature_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/body_composition_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_registration_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/lung_segmentation_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/qc_base.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/vasculature_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/xml_points_qc.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/anterior_vs_posterior_partition.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
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-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
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-- Up-to-date: /Users/acil-user/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Configuring done
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-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (50 errors, 2 warnings)

Build command: /Applications/CMake.app/Contents/bin/cmake --build . --config "Release" -- -i
Start Time: 2018-05-25T23:02:40 EDT
End Time: 2018-05-25T23:03:40 EDT

      File "/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 465, in validate
        raise ValidationError(getattr(self, 'name', 'undefined name'), val)
    ValidationError: Invalid value 1506080179.37 for timestamp

[ 32%] Completed 'CIPPython'
[ 32%] Built target CIPPython
[ 32%] Built target Boost
[ 32%] Performing update step for 'VTKv8'
[ 32%] Performing configure step for 'VTKv8'
loading initial cache file /.../CIP-build/VTKv8-prefix/tmp/VTKv8-cache-Release.cmake

CMake Error: Cannot open file for write: /.../CIP-build/VTKv8-build/CMakeTmp/VTK_UNDEFINED_SYMBOLS_ALLOWED/CMakeCache.txt.tmp

CMake Error: : System Error: No space left on device

CMake Error: Unable to open cache file for save. /.../CIP-build/VTKv8-build/CMakeTmp/VTK_UNDEFINED_SYMBOLS_ALLOWED/CMakeCache.txt

CMake Error: : System Error: No space left on device

CMake Error: Internal CMake error, TryCompile configure of cmake failed

-- Performing Test VTK_UNDEFINED_SYMBOLS_ALLOWED - Failed
-- Group StandAlone modules: vtkChartsCore;vtkCommonComputationalGeometry;vtkCommonCore;vtkCommonDataModel;vtkCommonExecutionModel;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkDomainsChemistry;vtkFiltersAMR;vtkFiltersCore;vtkFiltersExtraction;vtkFiltersFlowPaths;vtkFiltersGeneral;vtkFiltersGeneric;vtkFiltersGeometry;vtkFiltersHybrid;vtkFiltersHyperTree;vtkFiltersImaging;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelImaging;vtkFiltersPoints;vtkFiltersProgrammable;vtkFiltersSelection;vtkFiltersSMP;vtkFiltersSources;vtkFiltersStatistics;vtkFiltersTexture;vtkFiltersTopology;vtkFiltersVerdict;vtkImagingColor;vtkImagingCore;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInfovisCore;vtkInfovisLayout;vtkIOAMR;vtkIOCore;vtkIOEnSight;vtkIOExodus;vtkIOGeometry;vtkIOImage;vtkIOImport;vtkIOInfovis;vtkIOLegacy;vtkIOLSDyna;vtkIOMINC;vtkIOMovie;vtkIONetCDF;vtkIOParallel;vtkIOParallelXML;vtkIOPLY;vtkIOSQL;vtkIOTecplotTable;vtkIOVideo;vtkIOXML;vtkIOXMLParser;vtkParallelCore
-- Group Imaging modules: vtkFiltersImaging;vtkImagingColor;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkRenderingImage
-- Group MPI modules: vtkFiltersParallelDIY2;vtkFiltersParallelGeometry;vtkFiltersParallelMPI;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallelNetCDF;vtkParallelMPI;vtkdiy2
-- Group Rendering modules: vtkGeovisCore;vtkInteractionImage;vtkInteractionStyle;vtkInteractionWidgets;vtkIOExport;vtkRenderingAnnotation;vtkRenderingContext2D;vtkRenderingCore;vtkRenderingFreeType;vtkRenderingImage;vtkRenderingLabel;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingVolume;vtkViewsContext2D;vtkViewsCore;vtkViewsInfovis
-- Group Qt modules: vtkGUISupportQt;vtkGUISupportQtOpenGL;vtkGUISupportQtSQL;vtkRenderingQt;vtkViewsQt
-- Group Tk modules: vtkRenderingTk
-- Group Views modules: vtkViewsContext2D;vtkViewsGeovis
-- Group Web modules: vtkWebCore;vtkWebPython;vtkWebGLExporter
-- Backend OpenGL2 modules: vtkDomainsChemistryOpenGL2;vtkImagingOpenGL2;vtkIOExportOpenGL2;vtkRenderingContextOpenGL2;vtkRenderingGL2PSOpenGL2;vtkRenderingLICOpenGL2;vtkRenderingOculus;vtkRenderingOpenGL2;vtkRenderingOpenVR;vtkRenderingVolumeOpenGL2

-- BUNDLEDIR                                = Applications/OSGEO 
-- PROJ_INSTALL_NAME_DIR                    = @executable_path/../../Library/Frameworks 
-- FRAMEWORKDIR                             = Library/Frameworks 
-- 
-- [NON-XML-CHAR-0x1B][1;4;34mConfiguring proj library:[NON-XML-CHAR-0x1B][0m 
-- 
-- PROJ_CORE_TARGET                         = vtkproj4 
-- PROJ_CORE_TARGET_OUTPUT_NAME             = vtkproj4 
-- PROJ_LIBRARIES                           = vtkproj4 
-- Boost version: 1.65.1

CMake Error at CMake/vtkModuleTop.cmake:451 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMakeLists.txt:511 (include)


-- Configuring incomplete, errors occurred!
See also "/.../CIP-build/VTKv8-build/CMakeFiles/CMakeOutput.log".
See also "/.../CIP-build/VTKv8-build/CMakeFiles/CMakeError.log".
[  1%] Built target vtksys
[  1%] Built target vtkCommonCoreObjects

[  1%] Built target vtkIOTecplotTable
[  1%] Built target vtkInfovisBoostGraphAlgorithms
[  1%] Built target vtkTestingRendering
[  1%] Built target vtkViewsInfovis
[ 34%] No install step for 'VTKv8'
[ 35%] Completed 'VTKv8'
[ 35%] Built target VTKv8
[ 35%] Performing update step for 'teem'
[ 35%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake

CMake Error at CMakeLists.txt:108 (try_run):

  Failed to open

    /.../CIP-build/teem-build/CMakeFiles/CMakeTmp/CMakeLists.txt

  No space left on device

CMake Error: Could not open file for write in copy operation /.../CIP-build/teem-build/include/teem/airExistsConf.h.tmp

CMake Error: : System Error: No space left on device

CMake Error at CMakeLists.txt:337 (configure_file):

  configure_file Problem configuring file

CMake Error: Could not open file for write in copy operation /.../CIP-build/teem-build/TeemConfig.cmake.tmp

CMake Error: : System Error: No space left on device

CMake Error at CMakeLists.txt:524 (configure_file):

  configure_file Problem configuring file

CMake Error: Could not open file for write in copy operation /.../CIP-build/teem-build/CMake/TeemConfig.cmake.tmp

CMake Error: : System Error: No space left on device

CMake Error at CMakeLists.txt:547 (configure_file):

  configure_file Problem configuring file

  cmake-packages(7) manual for more.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring incomplete, errors occurred!
See also "/.../CIP-build/teem-build/CMakeFiles/CMakeOutput.log".
See also "/.../CIP-build/teem-build/CMakeFiles/CMakeError.log".

CMake Error: Cannot open file for write: /.../CIP-build/teem-build/CMakeCache.txt.tmp

CMake Error: : System Error: No space left on device

CMake Error: Unable to open cache file for save. /.../CIP-build/teem-build/CMakeCache.txt

CMake Error: : System Error: No space left on device

[ 35%] Performing build step for 'teem'
Linking C shared library bin/libteem.dylib
ld: malformed archive TOC entry for _slicer_zlib_zlibVersion, offset 131248 is beyond end of file 65536
 file '/.../CIP-build/zlib-install/lib/libzlib.a' for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

Built target teem

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/qbert'.  Stop.

Built target qbert

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/ninspect'.  Stop.

Built target ninspect

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/deconv'.  Stop.

Built target deconv

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/miter'.  Stop.

Built target miter

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/cubic'.  Stop.

Built target cubic

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/talkweb'.  Stop.

Built target talkweb

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/pprobe'.  Stop.

Built target pprobe

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/airSanity'.  Stop.

Built target airSanity

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/puller'.  Stop.

Built target puller

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/tend'.  Stop.

Built target tend

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/vprobe'.  Stop.

Built target vprobe

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/unu'.  Stop.

Built target unu

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/emap'.  Stop.

Built target emap

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/nrrdSanity'.  Stop.

Built target nrrdSanity

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/gprobe'.  Stop.

Built target gprobe

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/mrender'.  Stop.

Built target mrender

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/overrgb'.  Stop.

Built target overrgb

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/ungantry'.  Stop.

Built target ungantry

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/spots'.  Stop.

Built target spots

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/ilk'.  Stop.

Built target ilk

make[5]: *** No rule to make target `bin/libteem.1.12.0.dylib', needed by `bin/gkms'.  Stop.

Built target gkms
[ 37%] No install step for 'teem'
[ 38%] Completed 'teem'
[ 45%] Built target teem
[ 46%] Performing update step for 'ITKv4'
[ 48%] Performing configure step for 'ITKv4'
loading initial cache file /.../CIP-build/ITKv4-prefix/tmp/ITKv4-cache-Release.cmake
-- Enabled ITKAnisotropicSmoothing, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKAntiAlias, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKBiasCorrection, requested by ITK_BUILD_DEFAULT_MODULES.

-- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue.
-- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled MGHIO, requested by Module_MGHIO.
-- Performing Test ITK_PRIVATE_DYNAMIC_CAST - Failed
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") 
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a  
-- Performing TEST_DIRECT_VFD_WORKS... no
-- Filter ZLIB is ON

CMake Error at Modules/Bridge/VtkGlue/itk-module-init.cmake:9 (find_package):

  A logical block opening on the line

    /.../CIP-build/VTKv8-build/VTKConfig.cmake:109 (if)

  is not closed.
Call Stack (most recent call first):
  CMake/ITKModuleEnablement.cmake:316 (include)
  CMakeLists.txt:337 (include)

-- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue.
-- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled MGHIO, requested by Module_MGHIO.
-- Performing Test ITK_PRIVATE_DYNAMIC_CAST - Failed
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") 
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a  
-- Performing TEST_DIRECT_VFD_WORKS... no
-- Filter ZLIB is ON

CMake Error at Modules/Bridge/VtkGlue/itk-module-init.cmake:9 (find_package):

  A logical block opening on the line

    /.../CIP-build/VTKv8-build/VTKConfig.cmake:109 (if)

  is not closed.
Call Stack (most recent call first):
  CMake/ITKModuleEnablement.cmake:316 (include)
  CMakeLists.txt:337 (include)

[ 41%] Built target ITKAnisotropicSmoothing-all
[ 41%] Built target ITKLabelMap
[ 41%] Built target ITKLabelMap-all
[ 41%] Built target ITKImageCompose-all
[ 41%] Built target ITKMesh
[ 41%] Built target ITKMesh-all
[ 41%] Built target ITKZLIB-all
[ 42%] Linking CXX shared library ../../../../../../lib/libITKMetaIO-4.12.dylib
ld: malformed archive TOC entry for _slicer_zlib_zlibVersion, offset 131248 is beyond end of file 65536
 file '/.../CIP-build/zlib-install/lib/libzlib.a' for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

[ 43%] Built target ITKMetaIO
[ 43%] Built target ITKMetaIO-all
[ 43%] Built target ITKSpatialObjects
[ 43%] Built target ITKSpatialObjects-all
[ 43%] Built target ITKImageStatistics-all
[ 44%] Built target ITKPath
[ 44%] Built target ITKPath-all
[ 44%] Built target ITKImageIntensity-all
[ 44%] Built target ITKThresholding-all
[ 44%] Built target ITKConnectedComponents-all

[ 47%] Built target ITKDiffusionTensorImage-all
[ 47%] Built target ITKDisplacementField-all
[ 47%] Built target ITKEigen-all
[ 47%] Built target ITKEXPAT
[ 47%] Built target ITKExpat-all
[ 48%] Built target ITKIOXML
[ 48%] Built target ITKIOXML-all
[ 48%] Built target ITKIOSpatialObjects
[ 48%] Built target ITKIOSpatialObjects-all
[ 48%] Built target ITKRegistrationCommon-all

make[5]: *** No rule to make target `lib/libITKMetaIO-4.12.1.dylib', needed by `lib/libITKFEM-4.12.1.dylib'.  Stop.

[ 50%] Built target ITKFEM
[ 50%] Built target ITKFEM-all
[ 50%] Built target ITKPDEDeformableRegistration-all
[ 50%] Built target ITKFEMRegistration-all
[ 50%] Built target gdcmsocketxx
[ 51%] Built target gdcmCommon
[ 51%] Linking CXX shared library ../../../../../../../lib/libitkgdcmDSED-4.12.dylib
ld: malformed archive TOC entry for _slicer_zlib_zlibVersion, offset 131248 is beyond end of file 65536
 file '/.../CIP-build/zlib-install/lib/libzlib.a' for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

[ 53%] Built target gdcmDSED

make[5]: *** No rule to make target `lib/libitkgdcmDSED-4.12.1.dylib', needed by `lib/libitkgdcmIOD-4.12.1.dylib'.  Stop.

[ 54%] Built target gdcmIOD

make[5]: *** No rule to make target `lib/libitkgdcmDSED-4.12.1.dylib', needed by `lib/libitkgdcmDICT-4.12.1.dylib'.  Stop.

[ 55%] Built target gdcmDICT
[ 56%] Built target gdcmopenjpeg
[ 56%] Built target gdcmcharls
[ 56%] Built target gdcmuuid
[ 59%] Built target gdcmjpeg8
[ 62%] Built target gdcmjpeg12
[ 65%] Built target gdcmjpeg16

make[5]: *** No rule to make target `lib/libitkgdcmDSED-4.12.1.dylib', needed by `lib/libitkgdcmMSFF-4.12.1.dylib'.  Stop.

[ 70%] Built target gdcmMSFF
make[5]: *** No rule to make target `lib/libitkgdcmDSED-4.12.1.dylib', needed by `lib/libitkgdcmMEXD-4.12.1.dylib'.  Stop.
[ 73%] Built target gdcmMEXD
[ 73%] Built target ITKGDCM-all
[ 73%] Linking C shared library ../../../../../../lib/libITKznz-4.12.dylib
ld: malformed archive TOC entry for _slicer_zlib_zlibVersion, offset 131248 is beyond end of file 65536
 file '/.../CIP-build/zlib-install/lib/libzlib.a' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
[ 73%] Built target ITKznz
make[5]: *** No rule to make target `lib/libITKznz-4.12.1.dylib', needed by `lib/libITKniftiio-4.12.1.dylib'.  Stop.
The maximum number of reported warnings or errors has been reached!!!

View Errors Summary

Build Warnings (2)

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

[100%] Built target MGHIO
[100%] Built target MGHIO-all
[ 50%] No install step for 'ITKv4'
[ 51%] Completed 'ITKv4'
[ 55%] Built target ITKv4
[ 56%] Performing update step for 'SlicerExecutionModel'
[ 58%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache-Release.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

View Warnings Summary

Test (44 passed, 124 failed, 0 not run)

View Tests Summary