Start Time: 2017-12-05T23:01:53 EST End Time: 2017-12-05T23:01:54 EST Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch" Update Type: GIT Number of Updates: 7
Configure (0 errors, 0 warnings)
Start Time: 2017-12-05T23:01:54 EST End Time: 2017-12-05T23:02:24 EST Configure Command: /Applications/CMake.app/Contents/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP" Configure Return Value: 0 Configure Output:
[100%] Building CXX object Infovis/BoostGraphAlgorithms/CMakeFiles/vtkInfovisBoostGraphAlgorithms.dir/vtkBoostRandomSparseArraySource.cxx.o
In file included from /.../CIP-build/VTKv8/Infovis/BoostGraphAlgorithms/vtkBoostRandomSparseArraySource.cxx:29:
In file included from /.../CIP-build/Boost-install/include/boost/random.hpp:52:
In file included from /.../CIP-build/Boost-install/include/boost/random/generate_canonical.hpp:22:
In file included from /.../CIP-build/Boost-install/include/boost/math/special_functions.hpp:15:
In file included from /.../CIP-build/Boost-install/include/boost/math/special_functions/airy.hpp:10:
In file included from /.../CIP-build/Boost-install/include/boost/math/special_functions/bessel.hpp:18:
In file included from /.../CIP-build/Boost-install/include/boost/math/special_functions/detail/bessel_jy.hpp:14:
In file included from /.../CIP-build/Boost-install/include/boost/math/special_functions/gamma.hpp:28:
In file included from /.../CIP-build/Boost-install/include/boost/math/special_functions/lanczos.hpp:1288:
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:54:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:55:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:56:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:57:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:57:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:58:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:139:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:140:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:141:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:142:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:142:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP-build/Boost-install/include/boost/math/special_functions/detail/lanczos_sse2.hpp:143:4: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register __m128d vx2 = _mm_mul_pd(vx, vx);
^~~~~~~~~
12 warnings generated.
[100%] Building CXX object Infovis/BoostGraphAlgorithms/CMakeFiles/vtkInfovisBoostGraphAlgorithms.dir/vtkBoostSplitTableField.cxx.o
[100%] Linking CXX shared library ../../lib/libvtkInfovisBoostGraphAlgorithms-8.1.dylib
[100%] Built target vtkInfovisBoostGraphAlgorithms
Scanning dependencies of target vtkTestingRendering
[100%] Building CXX object Testing/Rendering/CMakeFiles/vtkTestingRendering.dir/vtkTesting.cxx.o
[100%] Building CXX object Testing/Rendering/CMakeFiles/vtkTestingRendering.dir/vtkTestingInteractor.cxx.o
[100%] Building CXX object Testing/Rendering/CMakeFiles/vtkTestingRendering.dir/vtkTestingObjectFactory.cxx.o
[100%] Building CXX object Views/Infovis/CMakeFiles/vtkViewsInfovis.dir/vtkTreeRingView.cxx.o
[100%] Building CXX object Views/Infovis/CMakeFiles/vtkViewsInfovis.dir/vtkViewUpdater.cxx.o
[100%] Linking CXX shared library ../../lib/libvtkViewsInfovis-8.1.dylib
[100%] Built target vtkViewsInfovis
[ 54%] No install step for 'VTKv8'
[ 56%] Completed 'VTKv8'
[ 59%] Built target VTKv8
[ 60%] Performing update step for 'teem'
[ 62%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake
CMake Warning (dev) at CMakeLists.txt:555 (install):
Policy CMP0062 is not set: Disallow install() of export() result. Run
"cmake --help-policy CMP0062" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The file
/.../CIP-build/teem-build/TeemLibraryDepends.cmake
was generated by the export() command. It should not be installed with the
install() command. Use the install(EXPORT) mechanism instead. See the
cmake-packages(7) manual for more.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
teem
This warning is for project developers. Use -Wno-dev to suppress it.
[100%] Linking CXX shared library ../../../../lib/libitkMGHIO-4.12.dylib
[100%] Built target MGHIO
[100%] Built target MGHIO-all
[ 74%] No install step for 'ITKv4'
[ 75%] Completed 'ITKv4'
[ 79%] Built target ITKv4
[ 80%] Performing update step for 'SlicerExecutionModel'
[ 81%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache-Release.cmake
-- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
ModuleDescriptionParser
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
-- Build files have been written to: /.../CIP-build/CIP-build
[ 91%] Performing forcebuild step for 'CIP'
[ 92%] Performing build step for 'CIP'
[ 0%] Built target copy-input-files
[ 0%] Copying Resource files
[ 0%] Built target copy-external-files
Scanning dependencies of target CIPUtilities
[ 0%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkSuperquadricTensorGlyphFilter.cxx.o
[ 1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkGlyph3DWithScaling.cxx.o
[ 1%] Building CXX object Utilities/CMakeFiles/CIPUtilities.dir/VTK/vtkImageConnectivity.cxx.o
/.../CIP/Utilities/VTK/vtkImageConnectivity.cxx:82:3: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
/.../CIP/Utilities/GraphCutsOptimization/energy.h:264:2: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register Var u;
^~~~~~~~~
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:111:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:584:22: note: in instantiation of member function 'Graph<int, int, long long>::process_sink_orphan' requested here
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:25: note: in instantiation of member function 'Graph<int, int, long long>::maxflow' requested here
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:28: note: in instantiation of member function 'Energy<int, int, long long>::minimize' requested here
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:585:22: note: in instantiation of member function 'Graph<int, int, long long>::process_source_orphan' requested here
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:25: note: in instantiation of member function 'Graph<int, int, long long>::maxflow' requested here
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:28: note: in instantiation of member function 'Energy<int, int, long long>::minimize' requested here
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/lib/libCIPUtilities.a(graph.cpp.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/lib/libCIPUtilities.a(maxflow.cpp.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/lib/libCIPUtilities.a(graph.cpp.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/lib/libCIPUtilities.a(maxflow.cpp.o) has no symbols
[ 2%] Built target CIPUtilities
[ 2%] Generating static ChestConventions files with /.../CIP-build/CIPPython-install/bin/python2.7
cipChestConventionsXmlAutoGenerated.h will be saved in /.../CIP/Common
Convention Files generated succesfully.
C++ Output path: /.../CIP/Common/cipChestConventionsXmlAutoGenerated.h
Python source path: /.../CIP/cip_python/common/chest_conventions_static.py
Python dest binary folder path: /.../CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
[ 2%] Built target generateChestConventions
Scanning dependencies of target CIPCommon
[ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[ 26%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobes.dir/.../CIP-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
[ 26%] Linking CXX executable ../../bin/SegmentLungLobes
Copying XML file 'SegmentLungLobes.xml' along side the executable
[ 26%] Built target SegmentLungLobes
Scanning dependencies of target SegmentLungLobesTest
[ 26%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
[ 27%] Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 27%] Built target SegmentLungLobesTest
Scanning dependencies of target ReadDicomWriteTagsLib
[ 28%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o
/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:246:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( commaLocation != std::string::npos )
~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:252:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( newlineLocation != std::string::npos )
~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
2 warnings generated.
[ 28%] Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 28%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 28%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../CIP-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
[ 28%] Linking CXX executable ../../bin/ReadDicomWriteTags
Copying XML file 'ReadDicomWriteTags.xml' along side the executable
[ 28%] Built target ReadDicomWriteTags
Copying XML file 'ExecuteSystemCommand.xml' along side the executable
[ 91%] Built target ExecuteSystemCommand
Scanning dependencies of target ExecuteSystemCommandTest
[ 91%] Building CXX object CommandLineTools/ExecuteSystemCommand/CMakeFiles/ExecuteSystemCommandTest.dir/Testing/ExecuteSystemCommandTest.cxx.o
[ 92%] Linking CXX executable ../Testing/bin/ExecuteSystemCommandTest
[ 92%] Built target ExecuteSystemCommandTest
Scanning dependencies of target GraphCutsOptimizationLib
[ 92%] Building CXX object CommandLineTools/GraphCutsOptimization/CMakeFiles/GraphCutsOptimizationLib.dir/GraphCutsOptimization.cxx.o
In file included from /.../CIP/CommandLineTools/GraphCutsOptimization/GraphCutsOptimization.cxx:14:
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:109:
/.../CIP/Utilities/GraphCutsOptimization/energy.h:262:2: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register Value pi = (E000 + E011 + E101 + E110) - (E100 + E010 + E001 + E111);
^~~~~~~~~
/.../CIP/Utilities/GraphCutsOptimization/energy.h:264:2: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register]
register Var u;
^~~~~~~~~
In file included from /.../CIP/CommandLineTools/GraphCutsOptimization/GraphCutsOptimization.cxx:14:
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:111:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
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