Wednesday, August 12 2026 14:30:52
CIP
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Show Build Graphs-- The C compiler identification is GNU 4.8.2 -- The CXX compiler identification is GNU 4.8.2 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done ----------- ENTRY ------------ Configuring Superbuild... -- Found Git: /usr/bin/git (found version "1.8.3.1") -- PRIMARY_PROJECT_NAME_DEPENDENCIES: CIPPython;SlicerExecutionModel;VTKv8;ITKv4;Boost;teem -- SuperBuild - First pass -- SuperBuild - First pass - done -- SuperBuild - CIP => Requires CIPPython[INCLUDED], SlicerExecutionModel, VTKv8, ITKv4, Boost[INCLUDED], teem, -- SuperBuild - SlicerExecutionModel => Requires ITKv4, -- SuperBuild - ITKv4 => Requires zlib, VTKv8, -- SuperBuild - zlib[OK] -- SuperBuild - ZLIB_INCLUDE_DIR:/home/ec2-user/Projects/CIP-build/CIP-build/zlib-install/include -- SuperBuild - ZLIB_LIBRARY:/home/ec2-user/Projects/CIP-build/CIP-build/zlib-install/lib/libzlib.a -- SuperBuild - ZLIB_ROOT:/home/ec2-user/Projects/CIP-build/CIP-build/zlib-install -- SuperBuild - VTKv8 => Requires zlib[INCLUDED], Boost[INCLUDED], -- SuperBuild - VTKv8[OK] -- SuperBuild - PNG_INCLUDE_DIR:/home/ec2-user/Projects/CIP-build/CIP-build/VTKv8/Utilities/vtkpng -- SuperBuild - PNG_LIBRARY:/home/ec2-user/Projects/CIP-build/CIP-build/VTKv8-build/bin/libvtkpng.so -- SuperBuild - LIBXML_INCLUDE_DIR:/home/ec2-user/Projects/CIP-build/CIP-build/VTKv8/ThirdParty/libxml2/vtklibxml2 -- SuperBuild - ITKv4[OK] -- SuperBuild - SlicerExecutionModel[OK] -- SuperBuild - teem => Requires zlib[INCLUDED], VTKv8[INCLUDED], -- SuperBuild - teem[OK] -- SuperBuild - CIP[OK] ----------- DONE ------------ -- Configuring done -- Generating done -- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build
- Command line help:
./b2 --help
- Getting started guide:
http://www.boost.org/more/getting_started/unix-variants.html
- Boost.Build documentation:
http://www.boost.org/boost-build2/doc/html/index.html
/.../CIP-build/Boost/tools/build/v2/tools/types/._asm.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._cpp.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._exe.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._html.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._lib.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._obj.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._objc.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._preprocessed.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._qt.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._register.jam:1: syntax error at EOF
/.../CIP-build/Boost/tools/build/v2/tools/types/._rsp.jam:1: syntax error at EOF
error: No best alternative for libs/coroutine/build/allocator_sources
next alternative: required properties: <link>static <target-os>windows <threading>multi
not matched
next alternative: required properties: <link>static <segmented-stacks>on <threading>multi
not matched
next alternative: required properties: <link>static <threading>multi
not matched
Performing configuration checks
- 32-bit : noView Errors Summarycommon.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread/thread.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/detail/thread.hpp:29,
from ./boost/thread/thread_only.hpp:22,
from libs/thread/src/pthread/thread.cpp:11:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
In file included from ./boost/tuple/tuple.hpp:33:0,
from ./boost/thread/detail/async_func.hpp:37,
from ./boost/thread/future.hpp:22,
from libs/thread/src/pthread/thread.cpp:19:
./boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:
./boost/tuple/detail/tuple_basic.hpp:228:45: warning: typedef ‘cons_element’ locally defined but not used [-Wunused-local-typedefs]
typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/pthread/once.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/pthread/once_atomic.hpp:19,
from ./boost/thread/once.hpp:20,
from libs/thread/src/pthread/./once_atomic.cpp:9,
from libs/thread/src/pthread/once.cpp:8:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/future.o
gcc.link.dll bin.v2/libs/thread/build/gcc-4.8.2/release/threading-multi/libboost_thread.so.1.54.0
common.copy /.../CIP-build/Boost-install/lib/libboost_thread.so.1.54.0
ln-UNIX /.../CIP-build/Boost-install/lib/libboost_thread.so
common.mkdir bin.v2/libs/context/build
common.mkdir bin.v2/libs/context/build/gcc-4.8.2
common.mkdir bin.v2/libs/context/build/gcc-4.8.2/release
common.mkdir bin.v2/libs/context/build/gcc-4.8.2/release/link-staticcommon.copy /.../CIP-build/Boost-install/lib/libboost_context.a common.mkdir bin.v2/libs/coroutine common.mkdir bin.v2/libs/coroutine/build common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2 common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi common.mkdir bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/detail gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/detail/standard_stack_allocator_posix.o libs/coroutine/src/detail/standard_stack_allocator_posix.cpp: In function ‘rlimit boost::coroutines::detail::stacksize_limit_()’:
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:61:15: warning: unused variable ‘result’ [-Wunused-variable]
const int result = ::getrlimit( RLIMIT_STACK, & limit);
^
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp: In member function ‘void boost::coroutines::detail::standard_stack_allocator::allocate(boost::coroutines::stack_context&, std::size_t)’:
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:135:15: warning: unused variable ‘result’ [-Wunused-variable]
const int result( ::mprotect( limit, detail::pagesize(), PROT_NONE) );
^
gcc.compile.c++ bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/detail/coroutine_context.o
gcc.archive bin.v2/libs/coroutine/build/gcc-4.8.2/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../CIP-build/Boost-install/lib/libboost_coroutine.a
common.mkdir /.../CIP-build/Boost-install/include
common.mkdir /.../CIP-build/Boost-install/include/boost
common.copy /.../CIP-build/Boost-install/include/boost/._aligned_storage.hpp
common.copy /.../CIP-build/Boost-install/include/boost/aligned_storage.hpp
common.copy /.../CIP-build/Boost-install/include/boost/._any.hppcommon.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi
common.mkdir bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/thread.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/detail/thread.hpp:29,
from ./boost/thread/thread_only.hpp:22,
from libs/thread/src/pthread/thread.cpp:11:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:
./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
In file included from ./boost/tuple/tuple.hpp:33:0,
from ./boost/thread/detail/async_func.hpp:37,
from ./boost/thread/future.hpp:22,
from libs/thread/src/pthread/thread.cpp:19:
./boost/tuple/detail/tuple_basic.hpp: In function ‘typename boost::tuples::access_traits<typename boost::tuples::element<N, boost::tuples::cons<HT, TT> >::type>::const_type boost::tuples::get(const boost::tuples::cons<HT, TT>&)’:
./boost/tuple/detail/tuple_basic.hpp:228:45: warning: typedef ‘cons_element’ locally defined but not used [-Wunused-local-typedefs]
typedef BOOST_DEDUCED_TYPENAME impl::type cons_element;
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/pthread/once.o
In file included from ./boost/bind/bind.hpp:29:0,
from ./boost/bind.hpp:22,
from ./boost/thread/pthread/once_atomic.hpp:19,
from ./boost/thread/once.hpp:20,
from libs/thread/src/pthread/./once_atomic.cpp:9,
from libs/thread/src/pthread/once.cpp:8:
./boost/bind/arg.hpp: In constructor ‘boost::arg<I>::arg(const T&)’:./boost/bind/arg.hpp:37:22: warning: typedef ‘T_must_be_placeholder’ locally defined but not used [-Wunused-local-typedefs]
typedef char T_must_be_placeholder[ I == is_placeholder<T>::value? 1: -1 ];
^
gcc.compile.c++ bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/future.o
gcc.archive bin.v2/libs/thread/build/gcc-4.8.2/release/link-static/threading-multi/libboost_thread.a
common.copy /.../CIP-build/Boost-install/lib/libboost_thread.a
...updated 20378 targets...
[ 47%] Performing build step for 'Boost'
Usage
cmake [options] <path-to-source>-- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Check the value of the 22nd bit of a 32-bit quiet-NaN -- Check the value of the 22nd bit of a 32-bit quiet-NaN - 1 -- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3")
CMake Warning (dev) at CMakeLists.txt:555 (install):
Policy CMP0062 is not set: Disallow install() of export() result. Run
"cmake --help-policy CMP0062" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
The file
/.../CIP-build/teem-build/TeemLibraryDepends.cmake
was generated by the export() command. It should not be installed with the
install() command. Use the install(EXPORT) mechanism instead. See thecreating build/temp.linux-x86_64-2.7/home creating build/temp.linux-x86_64-2.7/home/ec2-user creating build/temp.linux-x86_64-2.7/home/ec2-user/Projects creating build/temp.linux-x86_64-2.7/.../CIP creating build/temp.linux-x86_64-2.7/.../CIP/cip_python creating build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils creating build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python creating build/temp.linux-x86_64-2.7/.../CIP/Utilities creating build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization /usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/cip_python/utils/gco_python/gco_python.cpp -o build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /.../CIP/cip_python/utils/gco_python/gco_python.cpp:449:
/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \ ^ /usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0: /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In constructor ‘GCoptimization::GCoptimization(GCoptimization::SiteID, GCoptimization::LabelID)’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:311:10: warning: ‘GCoptimization::m_smoothcostFn’ will be initialized after [-Wreorder]
void* m_smoothcostFn;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:310:10: warning: ‘void* GCoptimization::m_datacostFn’ [-Wreorder]
void* m_datacostFn;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:321:86: warning: ‘GCoptimization::m_setupDataCostsSwap’ will be initialized after [-Wreorder]
void (GCoptimization::*m_setupDataCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:319:83: warning: ‘void (GCoptimization::* GCoptimization::m_setupDataCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]
void (GCoptimization::*m_setupDataCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:322:88: warning: ‘GCoptimization::m_setupSmoothCostsSwap’ will be initialized after [-Wreorder]
void (GCoptimization::*m_setupSmoothCostsSwap)(SiteID,LabelID,LabelID,EnergyT*,SiteID*);
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:320:85: warning: ‘void (GCoptimization::* GCoptimization::m_setupSmoothCostsExpansion)(GCoptimization::SiteID, GCoptimization::LabelID, GCoptimization::EnergyT*, GCoptimization::SiteID*)’ [-Wreorder]
void (GCoptimization::*m_setupSmoothCostsExpansion)(SiteID,LabelID,EnergyT*,SiteID*);
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:324:52: warning: ‘GCoptimization::m_updateLabelingDataCosts’ will be initialized after [-Wreorder]
void (GCoptimization::*m_updateLabelingDataCosts)();
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:317:59: warning: ‘GCoptimization::EnergyType (GCoptimization::* GCoptimization::m_giveSmoothEnergyInternal)()’ [-Wreorder]
EnergyType (GCoptimization::*m_giveSmoothEnergyInternal)();
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:328:57: warning: ‘GCoptimization::m_solveSpecialCases’ will be initialized after [-Wreorder]
bool (GCoptimization::*m_solveSpecialCases)(EnergyType&);
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:326:36: warning: ‘void (* GCoptimization::m_datacostFnDelete)(void*)’ [-Wreorder]
void (*m_datacostFnDelete)(void* f);
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:327:38: warning: ‘GCoptimization::m_smoothcostFnDelete’ will be initialized after [-Wreorder]
void (*m_smoothcostFnDelete)(void* f);
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:298:11: warning: ‘int GCoptimization::m_random_label_order’ [-Wreorder]
int m_random_label_order;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:308:18: warning: ‘GCoptimization::m_verbosity’ will be initialized after [-Wreorder]
int m_verbosity;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning: ‘bool GCoptimization::m_labelingInfoDirty’ [-Wreorder]
bool m_labelingInfoDirty;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:307:18: warning: ‘GCoptimization::m_labelingInfoDirty’ will be initialized after [-Wreorder]
bool m_labelingInfoDirty;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning: ‘GCoptimization::SiteID* GCoptimization::m_lookupSiteVar’ [-Wreorder]
SiteID *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:293:11: warning: ‘GCoptimization::m_lookupSiteVar’ will be initialized after [-Wreorder]
SiteID *m_lookupSiteVar; // holds index of variable corresponding to site participating in a move,
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:292:11: warning: ‘GCoptimization::LabelID* GCoptimization::m_labeling’ [-Wreorder]
LabelID *m_labeling;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:303:18: warning: ‘GCoptimization::m_activeLabelCounts’ will be initialized after [-Wreorder]
SiteID* m_activeLabelCounts;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:296:11: warning: ‘int GCoptimization::m_stepsThisCycle’ [-Wreorder]
int m_stepsThisCycle;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:89:1: warning: when initialized here [-Wreorder]
GCoptimization::GCoptimization(SiteID nSites, LabelID nLabels) ^ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimization::updateLabelingInfo(bool, bool, bool)’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1177:15: warning: unused variable ‘energy’ [-Wunused-variable]
EnergyType energy = 0;
^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::SiteID = int]’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45: required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36: required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromArray; GCoptimization::EnergyType = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:121:26: required from here
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_dc’ will be initialized after [-Wreorder]
DataCostT& m_dc;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning: ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromArray>::m_site’ [-Wreorder]
SiteID m_site;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning: when initialized here [-Wreorder]
GreedyIter(DataCostT& dc, SiteID numSites) ^ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::SiteID = int]’: /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45: required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36: required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFunctor; GCoptimization::EnergyType = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:769:30: required from here
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_dc’ will be initialized after [-Wreorder]
DataCostT& m_dc;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning: ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFunctor>::m_site’ [-Wreorder]
SiteID m_site;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning: when initialized here [-Wreorder]
GreedyIter(DataCostT& dc, SiteID numSites)
^
In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:111:0,
from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_sink_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’:
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:584:43: required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33: required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37: required from here
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:443:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (i->parent = a0_min) ^ /.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp: In instantiation of ‘void Graph<captype, tcaptype, flowtype>::process_source_orphan(Graph<captype, tcaptype, flowtype>::node*) [with captype = int; tcaptype = int; flowtype = long long int]’: /.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:585:45: required from ‘flowtype Graph<captype, tcaptype, flowtype>::maxflow(bool, Block<int>*) [with captype = int; tcaptype = int; flowtype = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/energy.h:325:33: required from ‘Energy<captype, tcaptype, flowtype>::TotalValue Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1241:37: required from here
/.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp:366:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (i->parent = a0_min) ^ In file included from /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:4:0: /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::SiteID = int]’: /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45: required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36: required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunction; GCoptimization::EnergyType = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30: required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunction]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:717:54: required from here
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_dc’ will be initialized after [-Wreorder]
DataCostT& m_dc;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning: ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunction>::m_site’ [-Wreorder]
SiteID m_site;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning: when initialized here [-Wreorder]
GreedyIter(DataCostT& dc, SiteID numSites) ^ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h: In instantiation of ‘GCoptimization::GreedyIter<DataCostT>::GreedyIter(DataCostT&, GCoptimization::SiteID) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::SiteID = int]’: /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:591:45: required from ‘GCoptimization::EnergyType GCoptimization::solveGreedy() [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:510:36: required from ‘bool GCoptimization::solveSpecialCases(GCoptimization::EnergyType&) [with DataCostT = GCoptimization::DataCostFnFromFunctionExtra; GCoptimization::EnergyType = long long int]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:235:30: required from ‘void GCoptimization::specializeDataCostFunctor(UserFunctor) [with UserFunctor = GCoptimization::DataCostFnFromFunctionExtra]’ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:725:70: required from here
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:520:14: warning: ‘GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_dc’ will be initialized after [-Wreorder]
DataCostT& m_dc;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:519:10: warning: ‘GCoptimization::SiteID GCoptimization::GreedyIter<GCoptimization::DataCostFnFromFunctionExtra>::m_site’ [-Wreorder]
SiteID m_site;
^
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.h:491:3: warning: when initialized here [-Wreorder]
GreedyIter(DataCostT& dc, SiteID numSites) ^ /.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp: In member function ‘void GCoptimizationGridGraph::computeNeighborWeights(GCoptimization::EnergyTermType*, GCoptimization::EnergyTermType*)’:
/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.cpp:1514:38: warning: ‘weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]
m_neighborsWeights[i*4+n] = weight;
^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/graph.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void LinkedBlockList::addFront(ListType)’:
/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:18:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
m_head ->m_item[m_head_block_size] = item;
^
/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp: In member function ‘void* LinkedBlockList::next()’:
/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.cpp:26:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]
ListType toReturn = m_cursor -> m_item[m_cursor_ind];
^
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Utilities/GraphCutsOptimization -I/.../CIP-build/CIPPython-install/lib/python2.7/site-packages/numpy/core/include -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/Utilities/GraphCutsOptimization/maxflow.cpp -o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
/usr/bin/c++ -pthread -shared -L/.../CIP-build/CIPPython-install/lib -Wl,-rpath=/.../CIP-build/CIPPython-install/lib,--no-as-needed build/temp.linux-x86_64-2.7/.../CIP/cip_python/utils/gco_python/gco_python.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/GCoptimization.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/graph.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/LinkedBlockList.o build/temp.linux-x86_64-2.7/.../CIP/Utilities/GraphCutsOptimization/maxflow.o -L/.../CIP/Utilities/GraphCutsOptimization -L/.../CIP-build/CIPPython-install/lib -lpython2.7 -o /.../CIP-build/CIP-build/cip_python/utils/pygco.so [ 10%] Built target CIP_PYTHON Scanning dependencies of target cipNelderMeadSimplexOptimizerTEST [ 10%] Building CXX object Common/Testing/CMakeFiles/cipNelderMeadSimplexOptimizerTEST.dir/cipNelderMeadSimplexOptimizerTEST.cxx.o [ 11%] Linking CXX executable cipNelderMeadSimplexOptimizerTEST [ 11%] Built target cipNelderMeadSimplexOptimizerTEST Scanning dependencies of target itkCIPExtractChestLabelMapImageFilterTEST [ 11%] Building CXX object Common/Testing/CMakeFiles/itkCIPExtractChestLabelMapImageFilterTEST.dir/itkCIPExtractChestLabelMapImageFilterTEST.cxx.o [ 11%] Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST [ 11%] Built target itkCIPExtractChestLabelMapImageFilterTEST
