Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20170829-0400-Nightly (related builds)
Time: 2017-08-29T00:02:30 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
CTest version: ctest-3.9.0

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Stage: Update (0 errors, 0 warnings)

Start Time: 2017-08-29T00:02:13 EDT
End Time: 2017-08-29T00:02:14 EDT
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 5

Configure (0 errors, 0 warnings)

Start Time: 2017-08-29T00:02:15 EDT
End Time: 2017-08-29T00:02:27 EDT
Configure Command: /home/ec2-user/sw/cmake-3.9.0-Linux-x86_64/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
-- Using CYTHON components
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ComputeStrainFromDeformationField
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/__init__.py
Wrapping GraphCutsOptimization with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python and flags   -fPIC  -Wno-array-bounds -msse2 
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/anatomic_structures_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/emphysema_classification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/body_composition_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_transfer_particles_region_type_values.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/transfer_particles_region_type_values.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_laa_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/laa_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/xml_points_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_registration_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/lung_segmentation_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/body_composition_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/qc_base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/vasculature_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/lung_splitter.py
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
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-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/locate_CARDIA_gated_artifacts.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/gco_python/setup.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/merge_particle_files.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/convert_labelmap_to_int.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (5 errors, 1 warnings)

Build command: /home/ec2-user/sw/cmake-3.9.0-Linux-x86_64/bin/cmake --build . --config "Release" -- -i
Start Time: 2017-08-29T00:02:30 EDT
End Time: 2017-08-29T00:05:06 EDT

Build Log line 2154


  File: Utilities/ITKStrain/itkSplitComponentsImageFilter.h
  Line: 98 
[ 92%] Built target ExecuteSystemCommand
[ 92%] Built target GraphCutsOptimizationLib
[ 93%] Built target GraphCutsOptimization
[ 94%] Built target GraphCutsOptimizationTest
[ 94%] Built target SegmentLungAirwaysLib
[ 94%] Built target SegmentLungAirwaysTest
[ 95%] Built target SegmentLungAirways
[ 95%] Building CXX object CommandLineTools/ComputeStrainFromDeformationField/CMakeFiles/ComputeStrainFromDeformationFieldLib.dir/ComputeStrainFromDeformationField.cxx.o
In file included from /.../CIP/Utilities/ITKStrain/itkStrainImageFilter.h:24:0,
                 from /.../CIP/CommandLineTools/ComputeStrainFromDeformationField/ComputeStrainFromDeformationField.cxx:15:

/.../CIP/Utilities/ITKStrain/itkSplitComponentsImageFilter.h:98:58: error: ISO C++ forbids declaration of ‘ITK_DISALLOW_COPY_AND_ASSIGN’ with no type [-fpermissive]
   ITK_DISALLOW_COPY_AND_ASSIGN(SplitComponentsImageFilter);
                                                          ^
In file included from /.../CIP/CommandLineTools/ComputeStrainFromDeformationField/ComputeStrainFromDeformationField.cxx:15:0:

Build Log line 2158


  File: Utilities/ITKStrain/itkStrainImageFilter.h
  Line: 136 
/.../CIP/Utilities/ITKStrain/itkStrainImageFilter.h:136:49: error: ISO C++ forbids declaration of ‘ITK_DISALLOW_COPY_AND_ASSIGN’ with no type [-fpermissive]
   ITK_DISALLOW_COPY_AND_ASSIGN(StrainImageFilter);
                                                 ^
[ 95%] Linking CXX static library ../../bin/libComputeStrainFromDeformationFieldLib.a

/usr/bin/ar: CMakeFiles/ComputeStrainFromDeformationFieldLib.dir/ComputeStrainFromDeformationField.cxx.o: No such file or directory
[ 95%] Built target ComputeStrainFromDeformationFieldLib

gmake[5]: *** No rule to make target `bin/libComputeStrainFromDeformationFieldLib.a', needed by `CommandLineTools/Testing/bin/ComputeStrainFromDeformationFieldTest'.  Stop.
[ 96%] Built target ComputeStrainFromDeformationFieldTest

gmake[5]: *** No rule to make target `bin/libComputeStrainFromDeformationFieldLib.a', needed by `bin/ComputeStrainFromDeformationField'.  Stop.
[ 97%] Built target ComputeStrainFromDeformationField
[ 98%] Built target ReadParticlesWriteConnectedParticlesLib
[ 98%] Built target ReadParticlesWriteConnectedParticlesTest
[ 98%] Built target ReadParticlesWriteConnectedParticles
[ 98%] Built target LabelAirwayParticlesByGenerationLib
[ 98%] Built target LabelAirwayParticlesByGeneration
[ 99%] Built target LabelAirwayParticlesByGenerationTest
[ 99%] Built target GenerateStatisticsForAirwayGenerationLabelingLib
[100%] Built target GenerateStatisticsForAirwayGenerationLabelingTest
[100%] Built target GenerateStatisticsForAirwayGenerationLabeling
View Errors Summary


Build Warnings (1)
[ 99%] Built target vtkInfovisBoostGraphAlgorithms
[ 99%] Built target vtkTestingRendering
[100%] Built target vtkViewsInfovis
[ 24%] No install step for 'VTKv7'
[ 25%] Completed 'VTKv7'
[ 29%] Built target VTKv7
[ 30%] Performing update step for 'teem'
[ 31%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake
-- Configuring done

CMake Warning (dev) at CMakeLists.txt:555 (install):
  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

View Warnings Summary


Test (66  passed, 11 failed, 0 not run)
 
View Tests Summary