Thursday, August 20 2026 15:21:30
CIP
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Show Build Graphs-- The C compiler identification is AppleClang 6.0.0.6000056 -- The CXX compiler identification is AppleClang 6.0.0.6000056 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done ----------- ENTRY ------------ Configuring Superbuild... -- Found Git: /Applications/GitHub.app/Contents/Resources/git/bin/git (found version "1.8.4") -- SuperBuild - First pass -- SuperBuild - First pass - done -- SuperBuild - CIP => Requires SlicerExecutionModel, ITKv4, VTKv6, Boost[INCLUDED], teem, -- SuperBuild - SlicerExecutionModel => Requires ITKv4, -- SuperBuild - ITKv4 => Requires zlib, -- SuperBuild - zlib[OK] -- SuperBuild - ZLIB_INCLUDE_DIR:/Users/acil-user/Projects/ChestImagingPlatform-master-build/CIP-build/zlib-install/include -- SuperBuild - ZLIB_LIBRARY:/Users/acil-user/Projects/ChestImagingPlatform-master-build/CIP-build/zlib-install/lib/libzlib.a -- SuperBuild - ZLIB_ROOT:/Users/acil-user/Projects/ChestImagingPlatform-master-build/CIP-build/zlib-install -- SuperBuild - ITKv4[OK] -- SuperBuild - SlicerExecutionModel[OK] -- SuperBuild - VTKv6 => Requires zlib[INCLUDED], -- SuperBuild - VTKv6[OK] -- SuperBuild - PNG_INCLUDE_DIR:/Users/acil-user/Projects/ChestImagingPlatform-master-build/CIP-build/VTKv6/Utilities/vtkpng -- SuperBuild - PNG_LIBRARY:/Users/acil-user/Projects/ChestImagingPlatform-master-build/CIP-build/VTKv6-build/bin/libvtkpng.dylib -- SuperBuild - teem => Requires zlib[INCLUDED], VTKv6[INCLUDED], -- SuperBuild - teem[OK] -- Found Subversion: /usr/bin/svn (found version "1.7.17") -- SuperBuild - CIP[OK] ----------- DONE ------------ -- Configuring done -- Generating done -- Build files have been written to: /Users/acil-user/Projects/ChestImagingPlatform-master-build/CIP-build
darwin.archive bin.v2/libs/context/build/darwin-4.2.1/release/link-static/threading-multi/libboost_context.a common.copy /.../ChestImagingPlatform-master-build/Boost-install/lib/libboost_context.a common.mkdir bin.v2/libs/coroutine common.mkdir bin.v2/libs/coroutine/build common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1 common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/standard_stack_allocator_posix.o
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:61:15: warning: unused variable 'result' [-Wunused-variable]
const int result = ::getrlimit( RLIMIT_STACK, & limit);
^
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:135:15: warning: unused variable 'result' [-Wunused-variable]
const int result( ::mprotect( limit, detail::pagesize(), PROT_NONE) );
^
2 warnings generated.
darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/coroutine_context.o
darwin.archive bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../ChestImagingPlatform-master-build/Boost-install/lib/libboost_coroutine.a
common.mkdir /.../ChestImagingPlatform-master-build/Boost-install/include
common.mkdir /.../ChestImagingPlatform-master-build/Boost-install/include/boost
common.copy /.../ChestImagingPlatform-master-build/Boost-install/include/boost/aligned_storage.hpp
common.copy /.../ChestImagingPlatform-master-build/Boost-install/include/boost/any.hpp-- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/X11R6/lib/libX11.dylib -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Check the value of the 22nd bit of a 32-bit quiet-NaN -- Check the value of the 22nd bit of a 32-bit quiet-NaN - 1 -- Found ZLIB: /.../ChestImagingPlatform-master-build/zlib-install/lib/libzlib.a (found version "1.2.3")
CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):
Policy CMP0033 is not set: The export_library_dependencies command should not be called. Run "cmake --help-policy CMP0033" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: teem This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done
-- Detecting CXX compiler ABI info - done -- Setting build type to 'Debug' as none was specified. -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: ModuleDescriptionParser This warning is for project developers. Use -Wno-dev to suppress it.
Linking CXX static library /.../ChestImagingPlatform-master-build/lib/libCIPUtilities.a [ 2%] Built target CIPUtilities Scanning dependencies of target CIPCommon [ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o [ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o [ 2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o [ 3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o [ 3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o [ 3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o [ 4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o
/.../ChestImagingPlatform-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:1:9: warning: '_itCIPkMergeChestLabelMapsImageFilter_txx' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]
#ifndef _itCIPkMergeChestLabelMapsImageFilter_txx
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/.../ChestImagingPlatform-master/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:2:9: note: '_itkCIPMergeChestLabelMapsImageFilter_txx' is defined here; did you mean '_itCIPkMergeChestLabelMapsImageFilter_txx'?
#define _itkCIPMergeChestLabelMapsImageFilter_txx
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_itCIPkMergeChestLabelMapsImageFilter_txx
1 warning generated.
[ 4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
[ 4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselParticleConnectedComponentFilter.cxx.o
[ 5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayParticleConnectedComponentFilter.cxx.o
[ 5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureParticleConnectedComponentFilter.cxx.o
[ 5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
[ 6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.ocythoning /.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.pyx to /.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp building 'ChestConventions' extension creating build creating build/temp.macosx-10.5-x86_64-2.7 creating build/temp.macosx-10.5-x86_64-2.7/Users creating build/temp.macosx-10.5-x86_64-2.7/Users/acil-user creating build/temp.macosx-10.5-x86_64-2.7/Users/acil-user/Projects creating build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master creating build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master/cip_python /usr/bin/cc -fno-strict-aliasing -I/Users/acil-user/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/.../ChestImagingPlatform-master/Common/ -I/Users/acil-user/anaconda/include/python2.7 -c /.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp -o build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.o
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4391:28: warning: unused function '__Pyx_PyObject_AsString' [-Wunused-function]
static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
^
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4388:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
^
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:297:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
^
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4503:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
^
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4528:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
^
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4127:32: warning: unused function '__Pyx_PyInt_From_long' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
^
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4153:27: warning: function '__Pyx_PyInt_As_long' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
^
/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.cpp:4248:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
^
8 warnings generated.
/usr/bin/c++ -bundle -undefined dynamic_lookup -L/Users/acil-user/anaconda/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/.../ChestImagingPlatform-master/cip_python/wrap_ChestConventions.o -L/.../ChestImagingPlatform-master-build/lib -L/Users/acil-user/anaconda/lib -lChestConventions -o /.../ChestImagingPlatform-master/cip_python/ChestConventions.so
[ 10%] Built target CIP_PYTHON
Scanning dependencies of target cipHelperTEST
[ 10%] Building CXX object Common/Testing/CMakeFiles/cipHelperTEST.dir/cipHelperTEST.cxx.o
Linking CXX executable cipHelperTEST
[ 10%] Built target cipHelperTEST
Scanning dependencies of target cipLobeSurfaceModelTESTScanning dependencies of target SegmentLungLobesTest [ 32%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o Linking CXX executable ../Testing/bin/SegmentLungLobesTest [ 32%] Built target SegmentLungLobesTest [ 32%] Generating ReadDicomWriteTagsCLP.h GenerateCLP --InputXML /.../ChestImagingPlatform-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.xml --OutputCxx /.../ChestImagingPlatform-master-build/CIP-build/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTagsCLP.h GenerateCLP: Found 1 parameters groups GenerateCLP: Group "IO" has 4 parameters Scanning dependencies of target ReadDicomWriteTagsLib [ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o
/.../ChestImagingPlatform-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( commaLocation != std::string::npos )
~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
/.../ChestImagingPlatform-master/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
if ( newlineLocation != std::string::npos )
~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 33%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../ChestImagingPlatform-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 33%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTestScanning dependencies of target CropLungTest [ 49%] Building CXX object CommandLineTools/CropLung/CMakeFiles/CropLungTest.dir/Testing/CropLungTest.cxx.o Linking CXX executable ../Testing/bin/CropLungTest [ 49%] Built target CropLungTest [ 49%] Generating GenerateModelCLP.h GenerateCLP --InputXML /.../ChestImagingPlatform-master/CommandLineTools/GenerateModel/GenerateModel.xml --OutputCxx /.../ChestImagingPlatform-master-build/CIP-build/CommandLineTools/GenerateModel/GenerateModelCLP.h GenerateCLP: Found 1 parameters groups GenerateCLP: Group "" has 6 parameters Scanning dependencies of target GenerateModelLib [ 50%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModelLib.dir/GenerateModel.cxx.o
/.../ChestImagingPlatform-master/CommandLineTools/GenerateModel/GenerateModel.cxx:131:24: warning: comparison of constant -1 with expression of type 'unsigned short' is always false [-Wtautological-constant-out-of-range-compare]
if ( foregroundLabel == -1 )
~~~~~~~~~~~~~~~ ^ ~~
1 warning generated.
Linking CXX static library ../../bin/libGenerateModelLib.a
[ 50%] Built target GenerateModelLib
Scanning dependencies of target GenerateModel
[ 50%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModel.dir/.../ChestImagingPlatform-master-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/GenerateModel
[ 50%] Built target GenerateModel
Scanning dependencies of target GenerateModelTest
