Site Name: MacJ.local
Build Name: ChestImagingPlatformPrivate-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20150106-0400-Nightly (related builds)
Time: 2015-01-06T02:36:27 EST
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F34
Compiler Version: unknown
CTest version: ctest-3.0.0

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Stage: Update (0 errors, 0 warnings)

Start Time: 2015-01-06T02:35:32 EST
End Time: 2015-01-06T02:35:34 EST
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 2

Configure (0 errors, 0 warnings)

Start Time: 2015-01-06T02:35:36 EST
End Time: 2015-01-06T02:36:24 EST
Configure Command: /Applications/CMake.app/Contents/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/Jorge/Projects/BWH/ChestImagingPlatformPrivate"
Configure Return Value: 0
Configure Output:
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleLabelMap2D
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT2D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT3D
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric3D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric2D
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps3D
-- Configuring SEM CLI module: RegisterLabelMaps2D
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: RegisterCT2D
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/Jorge/Projects/BWH/ChestImagingPlatformPrivate-build/CIP-build

View Configure Summary

Build (0 errors, 10 warnings)

Build command: -- -i
Start Time: 2015-01-06T02:36:27 EST
End Time: 2015-01-06T02:59:09 EST

View Errors Summary

Build Warnings (10)

Build Log line 137


File: /Users/Jorge/Projects/BWH/ChestImagingPlatformPrivate-build/libs/coroutine/src/detail/standard_stack_allocator_posix.cpp Line: 61
darwin.archive bin.v2/libs/context/build/darwin-4.2.1/release/link-static/threading-multi/libboost_context.a
common.copy /.../ChestImagingPlatformPrivate-build/Boost-install/lib/libboost_context.a
common.mkdir bin.v2/libs/coroutine
common.mkdir bin.v2/libs/coroutine/build
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail
darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/standard_stack_allocator_posix.o
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:61:15: warning: unused variable 'result' [-Wunused-variable]
    const int result = ::getrlimit( RLIMIT_STACK, & limit);
              ^

Build Log line 140


File: /Users/Jorge/Projects/BWH/ChestImagingPlatformPrivate-build/libs/coroutine/src/detail/standard_stack_allocator_posix.cpp Line: 135
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:135:15: warning: unused variable 'result' [-Wunused-variable]
    const int result( ::mprotect( limit, detail::pagesize(), PROT_NONE) );
              ^
2 warnings generated.
darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/coroutine_context.o
darwin.archive bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../ChestImagingPlatformPrivate-build/Boost-install/lib/libboost_coroutine.a
common.mkdir bin.v2/libs/system/build/darwin-4.2.1/release/link-static
common.mkdir bin.v2/libs/system/build/darwin-4.2.1/release/link-static/threading-multi
darwin.compile.c++ bin.v2/libs/system/build/darwin-4.2.1/release/link-static/threading-multi/error_code.o
darwin.archive bin.v2/libs/system/build/darwin-4.2.1/release/link-static/threading-multi/libboost_system.a
[ 42%] Built target VTKv6
[ 43%] Creating directories for 'teem'
[ 45%] Performing download step (SVN checkout) for 'teem'
Checked out revision 6208.
[ 47%] No patch step for 'teem'
[ 49%] Performing update step (SVN update) for 'teem'
Updating '.':
At revision 6208.
[ 50%] Performing configure step for 'teem'
loading initial cache file /.../ChestImagingPlatformPrivate-build/teem-prefix/tmp/teem-cache.cmake
CMake Warning (dev) at CMakeLists.txt:451 (EXPORT_LIBRARY_DEPENDENCIES):
  Policy CMP0033 is not set: The export_library_dependencies command should
  not be called.  Run "cmake --help-policy CMP0033" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.
[ 70%] Built target ITKv4
[ 71%] Creating directories for 'SlicerExecutionModel'
[ 73%] Performing download step (git clone) for 'SlicerExecutionModel'
-- Avoiding repeated git clone, stamp file is up to date: '/.../ChestImagingPlatformPrivate-build/SlicerExecutionModel-prefix/src/SlicerExecutionModel-stamp/SlicerExecutionModel-gitclone-lastrun.txt'
[ 75%] No patch step for 'SlicerExecutionModel'
[ 77%] Performing update step for 'SlicerExecutionModel'
[ 78%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../ChestImagingPlatformPrivate-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 1539


File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx Line: 1
Linking CXX static library /.../ChestImagingPlatformPrivate-build/lib/libCIPUtilities.a
[  2%] Built target CIPUtilities
Scanning dependencies of target CIPCommon
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipThinPlateSplineSurface.cxx.o
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLobeSurfaceModel.cxx.o
[  2%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestRegionChestTypeLocations.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipSphereStencil.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipCylinderStencil.cxx.o
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/itkCIPMergeChestLabelMapsImageFilter.cxx.o
/.../ChestImagingPlatformPrivate/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:1:9: warning: '_itCIPkMergeChestLabelMapsImageFilter_txx' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]
#ifndef _itCIPkMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Build Log line 1542


File: Common/itkCIPMergeChestLabelMapsImageFilter.cxx Line: 2
/.../ChestImagingPlatformPrivate/Common/itkCIPMergeChestLabelMapsImageFilter.cxx:2:9: note: '_itkCIPMergeChestLabelMapsImageFilter_txx' is defined here; did you mean '_itCIPkMergeChestLabelMapsImageFilter_txx'?
#define _itkCIPMergeChestLabelMapsImageFilter_txx
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        _itCIPkMergeChestLabelMapsImageFilter_txx
1 warning generated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipParticleConnectedComponentFilter.cxx.o
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipVesselParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipAirwayParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipFissureParticleConnectedComponentFilter.cxx.o
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipLeftLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipRightLobesThinPlateSplineSurfaceModelToParticlesMetric.cxx.o

Build Log line 1799


File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx Line: 298
Scanning dependencies of target SegmentLungLobes
[ 32%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobes.dir/.../ChestImagingPlatformPrivate-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/SegmentLungLobes
[ 32%] Built target SegmentLungLobes
Scanning dependencies of target SegmentLungLobesTest
[ 32%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 32%] Built target SegmentLungLobesTest
Scanning dependencies of target ReadDicomWriteTagsLib
[ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o
/.../ChestImagingPlatformPrivate/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
        if ( commaLocation != std::string::npos )
             ~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~

Build Log line 1802


File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx Line: 304
/.../ChestImagingPlatformPrivate/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
        if ( newlineLocation != std::string::npos )
             ~~~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~
2 warnings generated.
Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 33%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 33%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../ChestImagingPlatformPrivate-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 33%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest

Build Log line 2002


File: CommandLineTools/GenerateModel/GenerateModel.cxx Line: 131
Scanning dependencies of target CropLung
[ 49%] Building CXX object CommandLineTools/CropLung/CMakeFiles/CropLung.dir/.../ChestImagingPlatformPrivate-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/CropLung
[ 49%] Built target CropLung
Scanning dependencies of target CropLungTest
[ 49%] Building CXX object CommandLineTools/CropLung/CMakeFiles/CropLungTest.dir/Testing/CropLungTest.cxx.o
Linking CXX executable ../Testing/bin/CropLungTest
[ 49%] Built target CropLungTest
Scanning dependencies of target GenerateModelLib
[ 50%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModelLib.dir/GenerateModel.cxx.o
/.../ChestImagingPlatformPrivate/CommandLineTools/GenerateModel/GenerateModel.cxx:131:24: warning: comparison of constant -1 with expression of type 'unsigned short' is always false [-Wtautological-constant-out-of-range-compare]
  if ( foregroundLabel == -1 )
       ~~~~~~~~~~~~~~~ ^  ~~
1 warning generated.
Linking CXX static library ../../bin/libGenerateModelLib.a
[ 50%] Built target GenerateModelLib
Scanning dependencies of target GenerateModel
[ 50%] Building CXX object CommandLineTools/GenerateModel/CMakeFiles/GenerateModel.dir/.../ChestImagingPlatformPrivate-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
Linking CXX executable ../../bin/GenerateModel
[ 50%] Built target GenerateModel
Scanning dependencies of target GenerateModelTest

View Warnings Summary

Test (39 passed, 51 failed, 0 not run)
View Tests Summary